Wall clock time and date at job start Tue Mar 31 2020 21:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 C 1.50706 * 109.46956 * 119.99979 * 2 1 3 5 5 O 1.21274 * 120.00034 * 119.99919 * 4 2 1 6 6 N 1.34775 * 119.99541 * 299.99469 * 4 2 1 7 7 C 1.46506 * 119.99693 * 179.97438 * 6 4 2 8 8 H 1.08996 * 109.46660 * 35.00912 * 7 6 4 9 9 C 1.52997 * 109.47289 * 275.00198 * 7 6 4 10 10 C 1.52999 * 109.46684 * 155.00124 * 7 6 4 11 11 C 1.53945 * 113.74529 * 278.73866 * 10 7 6 12 12 N 1.47807 * 86.04084 * 222.08774 * 11 10 7 13 13 C 1.36936 * 134.45937 * 204.64279 * 12 11 10 14 14 H 1.08005 * 120.00346 * 179.86277 * 13 12 11 15 15 C 1.38811 * 119.99896 * 359.87268 * 13 12 11 16 16 N 1.31623 * 120.00001 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00199 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47031 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47325 * 119.99616 * 17 15 13 20 20 H 1.48504 * 109.47317 * 239.99651 * 17 15 13 21 21 C 1.47576 * 91.04962 * 24.54882 * 12 11 10 22 22 C 1.50706 * 109.47032 * 239.99552 * 2 1 3 23 23 C 1.38231 * 119.98619 * 300.00272 * 22 2 1 24 24 C 1.38186 * 120.04886 * 179.97438 * 23 22 2 25 25 C 1.38496 * 120.02200 * 359.97438 * 24 23 22 26 26 F 1.35107 * 120.00816 * 179.97438 * 25 24 23 27 27 C 1.38395 * 119.97727 * 0.02562 * 25 24 23 28 28 C 1.38444 * 119.95021 * 359.76041 * 27 25 24 29 29 F 1.35098 * 120.01237 * 180.23249 * 28 27 25 30 30 H 1.09002 * 109.46959 * 60.00173 * 1 2 3 31 31 H 1.08999 * 109.47559 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47335 * 300.00579 * 1 2 3 33 33 H 0.97000 * 120.00190 * 0.02562 * 6 4 2 34 34 H 1.09002 * 109.47153 * 179.97438 * 9 7 6 35 35 H 1.09001 * 109.46832 * 60.00146 * 9 7 6 36 36 H 1.09004 * 109.47261 * 300.00128 * 9 7 6 37 37 H 1.09002 * 112.94852 * 50.34103 * 10 7 6 38 38 H 1.08997 * 113.76654 * 336.35575 * 11 10 7 39 39 H 1.09002 * 113.76615 * 107.75050 * 11 10 7 40 40 H 0.96992 * 119.99763 * 180.02562 * 16 15 13 41 41 H 1.09006 * 113.77253 * 221.14869 * 21 12 11 42 42 H 1.09000 * 113.87108 * 89.76663 * 21 12 11 43 43 H 1.08000 * 119.97216 * 359.97323 * 23 22 2 44 44 H 1.07999 * 119.98649 * 179.97438 * 24 23 22 45 45 H 1.08008 * 120.02570 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7067 -0.2498 2.4546 7 6 2.1945 -0.9408 3.6508 8 1 3.1936 -1.3332 3.4616 9 6 1.2499 -2.0942 3.9944 10 6 2.2462 0.0423 4.8220 11 6 3.5025 0.9321 4.8295 12 7 3.5411 0.6888 6.2868 13 6 4.0614 1.3640 7.3585 14 1 3.9502 0.9631 8.3552 15 6 4.7315 2.5640 7.1639 16 7 4.8672 3.0525 5.9492 17 14 5.4405 3.4856 8.6258 18 1 5.1543 2.7314 9.8726 19 1 6.9094 3.6257 8.4576 20 1 4.8212 4.8328 8.7095 21 6 2.7923 -0.5724 6.1235 22 6 2.0323 -0.7105 -1.2305 23 6 1.6981 -2.0339 -1.4488 24 6 2.1576 -2.6866 -2.5769 25 6 2.9531 -2.0150 -3.4903 26 9 3.4026 -2.6535 -4.5929 27 6 3.2882 -0.6900 -3.2726 28 6 2.8237 -0.0359 -2.1443 29 9 3.1463 1.2589 -1.9330 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.1488 0.5387 2.5435 34 1 1.6131 -2.6086 4.8842 35 1 1.2131 -2.7946 3.1600 36 1 0.2508 -1.7016 4.1837 37 1 1.3161 0.5951 4.9543 38 1 4.3472 0.5039 4.2900 39 1 3.3070 1.9704 4.5613 40 1 5.3357 3.8908 5.8133 41 1 2.0308 -0.7332 6.8868 42 1 3.4264 -1.4446 5.9651 43 1 1.0775 -2.5582 -0.7373 44 1 1.8962 -3.7207 -2.7463 45 1 3.9082 -0.1653 -3.9846 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755391001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:06 Heat of formation + Delta-G solvation = -74.250663 kcal Electronic energy + Delta-G solvation = -29073.279372 eV Core-core repulsion = 24727.488231 eV Total energy + Delta-G solvation = -4345.791141 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.10118 -50.02918 -41.39715 -40.11631 -39.26456 -36.14802 -35.20944 -34.12812 -31.91626 -31.64916 -29.92116 -29.32445 -26.66285 -25.86927 -25.51237 -24.25639 -23.64386 -22.36560 -21.28582 -20.39889 -19.30602 -18.77287 -18.53226 -17.86484 -17.46331 -16.99937 -16.90872 -16.76624 -16.43289 -16.34865 -16.05695 -15.71663 -15.52234 -15.31484 -15.01217 -14.78514 -14.55655 -14.10447 -13.83073 -13.80817 -13.43563 -13.29820 -13.23443 -13.09252 -12.96069 -12.91183 -12.74557 -12.67415 -12.50426 -12.25097 -12.13043 -11.94957 -11.73933 -11.44808 -11.23854 -10.89692 -10.71008 -10.06786 -9.97712 -9.65827 -8.92202 -7.91122 -5.24613 -0.12303 0.01197 1.44564 1.45757 1.55954 1.67269 2.10578 2.45381 2.47408 2.82421 3.29450 3.29972 3.38500 3.43800 3.53777 3.71943 3.82486 3.94094 4.00486 4.12514 4.16540 4.29895 4.33391 4.53055 4.62192 4.69707 4.76216 4.79451 4.84475 4.87610 4.88722 4.90313 4.94476 5.04268 5.04776 5.14274 5.22871 5.26270 5.30461 5.38354 5.50825 5.58958 5.69220 5.73258 5.93622 6.62363 6.91520 7.29926 7.60618 8.56383 9.25783 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017333 B = 0.002426 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.004815 B =11537.963374 C =12335.450975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.071 4.071 3 H 0.111 0.889 4 C 0.519 3.481 5 O -0.572 6.572 6 N -0.708 5.708 7 C 0.160 3.840 8 H 0.056 0.944 9 C -0.147 4.147 10 C -0.107 4.107 11 C 0.167 3.833 12 N -0.646 5.646 13 C -0.233 4.233 14 H 0.085 0.915 15 C -0.071 4.071 16 N -0.954 5.954 17 Si 0.978 3.022 18 H -0.264 1.264 19 H -0.296 1.296 20 H -0.290 1.290 21 C 0.130 3.870 22 C -0.115 4.115 23 C -0.032 4.032 24 C -0.158 4.158 25 C 0.118 3.882 26 F -0.136 7.136 27 C -0.197 4.197 28 C 0.118 3.882 29 F -0.137 7.137 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.412 0.588 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.000 1.000 39 H 0.042 0.958 40 H 0.247 0.753 41 H 0.065 0.935 42 H 0.041 0.959 43 H 0.153 0.847 44 H 0.165 0.835 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.065 -10.062 -18.169 25.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.092 4.092 3 H 0.129 0.871 4 C 0.306 3.694 5 O -0.452 6.452 6 N -0.359 5.359 7 C 0.054 3.946 8 H 0.074 0.926 9 C -0.205 4.205 10 C -0.127 4.127 11 C 0.041 3.959 12 N -0.372 5.372 13 C -0.361 4.361 14 H 0.103 0.897 15 C -0.263 4.263 16 N -0.603 5.603 17 Si 0.807 3.193 18 H -0.188 1.188 19 H -0.223 1.223 20 H -0.217 1.217 21 C 0.004 3.996 22 C -0.117 4.117 23 C -0.050 4.050 24 C -0.176 4.176 25 C 0.098 3.902 26 F -0.115 7.115 27 C -0.216 4.216 28 C 0.098 3.902 29 F -0.115 7.115 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.249 0.751 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.125 0.875 38 H 0.018 0.982 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.084 0.916 42 H 0.059 0.941 43 H 0.171 0.829 44 H 0.183 0.817 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -13.389 -10.499 -18.074 24.822 hybrid contribution 1.292 1.335 0.496 1.923 sum -12.097 -9.163 -17.578 23.223 Atomic orbital electron populations 1.21829 0.88684 1.04074 1.04632 1.20255 1.00284 1.00176 0.88488 0.87112 1.20722 0.79434 0.84196 0.85093 1.90691 1.39150 1.28166 1.87154 1.45957 1.53077 1.32097 1.04775 1.20813 0.97952 0.92549 0.83248 0.92581 1.22027 0.99815 0.96927 1.01769 1.23435 0.98793 0.96580 0.93903 1.22179 0.92548 0.97311 0.83850 1.46465 1.65611 1.22066 1.03065 1.19490 1.28164 1.01359 0.87112 0.89738 1.25650 1.02047 0.99292 0.99353 1.70021 1.47975 1.21282 1.21067 0.85010 0.77143 0.78240 0.78937 1.18788 1.22332 1.21659 1.22684 0.93295 0.88810 0.94763 1.19619 1.00261 0.95866 0.95912 1.20839 0.96749 0.91961 0.95405 1.21441 0.99463 1.02490 0.94237 1.17413 0.97464 0.90348 0.84947 1.91521 1.87506 1.81543 1.50905 1.21102 1.05801 0.94925 0.99784 1.17270 0.98197 0.79076 0.95647 1.91504 1.91107 1.34193 1.94736 0.89967 0.90921 0.89730 0.75099 0.91151 0.92760 0.90503 0.87512 0.98249 0.94004 0.94393 0.91640 0.94082 0.82935 0.81741 0.82336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 8.90 71.98 0.64 -0.91 16 2 C -0.07 -1.34 2.88 -12.28 -0.04 -1.38 16 3 H 0.11 2.14 7.12 -2.39 -0.02 2.12 16 4 C 0.52 13.08 6.99 87.66 0.61 13.69 16 5 O -0.57 -18.63 14.77 -3.01 -0.04 -18.68 16 6 N -0.71 -16.70 4.97 -442.53 -2.20 -18.90 16 7 C 0.16 4.47 2.38 44.99 0.11 4.58 16 8 H 0.06 1.96 7.41 -2.39 -0.02 1.94 16 9 C -0.15 -3.22 9.31 71.98 0.67 -2.55 16 10 C -0.11 -3.58 3.47 -10.13 -0.04 -3.62 16 11 C 0.17 7.87 7.08 86.44 0.61 8.49 16 12 N -0.65 -33.05 3.70 -716.08 -2.65 -35.70 16 13 C -0.23 -13.13 10.70 84.03 0.90 -12.23 16 14 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 15 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 16 N -0.95 -58.31 11.39 21.65 0.25 -58.07 16 17 Si 0.98 46.10 29.55 68.60 2.03 48.12 16 18 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 19 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 20 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 21 C 0.13 4.93 7.64 86.49 0.66 5.59 16 22 C -0.12 -2.38 4.40 -19.81 -0.09 -2.46 16 23 C -0.03 -0.57 7.92 22.26 0.18 -0.39 16 24 C -0.16 -2.63 10.03 22.32 0.22 -2.41 16 25 C 0.12 2.24 7.30 22.37 0.16 2.40 16 26 F -0.14 -2.66 17.27 44.97 0.78 -1.88 16 27 C -0.20 -3.89 10.01 22.36 0.22 -3.67 16 28 C 0.12 2.59 7.24 22.37 0.16 2.75 16 29 F -0.14 -3.29 16.19 44.97 0.73 -2.56 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.75 7.39 -2.39 -0.02 0.73 16 32 H 0.08 0.75 7.56 -2.39 -0.02 0.73 16 33 H 0.41 7.69 8.02 -92.71 -0.74 6.94 16 34 H 0.07 1.51 7.52 -2.39 -0.02 1.49 16 35 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 38 H 0.00 -0.02 7.99 -2.39 -0.02 -0.03 16 39 H 0.04 2.20 7.17 -2.39 -0.02 2.19 16 40 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 41 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 42 H 0.04 1.53 8.10 -2.39 -0.02 1.51 16 43 H 0.15 2.35 7.51 -2.91 -0.02 2.33 16 44 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 45 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -73.49 379.68 4.62 -68.87 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.27 Total: 14.52 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 5.46 Total: 4.28 kcal Atomic # 7 Polarization: -108.06 SS G_CDS: -4.60 Total: -112.67 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.04 Total: -18.68 kcal Atomic # 9 Polarization: -5.95 SS G_CDS: 1.50 Total: -4.45 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.12 kcal Total: -73.49 4.62 -68.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755391001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.379 kcal (2) G-P(sol) polarization free energy of solvation -73.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds