Wall clock time and date at job start Tue Mar 31 2020 20:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.87730 * 2 1 4 4 C 1.54383 * 110.02964 * 121.05685 * 2 1 3 5 5 H 1.08999 * 110.70275 * 23.30582 * 4 2 1 6 6 N 1.46899 * 110.75492 * 260.01576 * 4 2 1 7 7 C 1.46900 * 110.99597 * 160.02831 * 6 4 2 8 8 C 1.50700 * 109.47304 * 180.02562 * 7 6 4 9 9 C 1.39867 * 125.90339 * 94.71206 * 8 7 6 10 10 C 1.35312 * 107.91995 * 179.86789 * 9 8 7 11 11 N 1.34945 * 107.75061 * 0.39736 * 10 9 8 12 12 C 1.46498 * 126.04217 * 179.75176 * 11 10 9 13 13 N 1.30836 * 125.89519 * 275.02870 * 8 7 6 14 14 C 1.55158 * 102.91824 * 141.64798 * 4 2 1 15 15 C 1.54909 * 101.61642 * 324.54893 * 14 4 2 16 16 N 1.47016 * 109.88556 * 238.97612 * 2 1 3 17 17 C 1.34774 * 125.64624 * 61.51952 * 16 2 1 18 18 O 1.21282 * 120.00096 * 359.97438 * 17 16 2 19 19 C 1.50703 * 119.99909 * 179.97438 * 17 16 2 20 20 S 1.81002 * 109.47234 * 180.02562 * 19 17 16 21 21 C 1.76200 * 100.00249 * 179.97438 * 20 19 17 22 22 H 1.08004 * 119.99642 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00002 * 180.02562 * 21 20 19 24 24 N 1.31623 * 120.00006 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99836 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47525 * 89.99854 * 25 23 21 27 27 H 1.48503 * 109.47197 * 209.99861 * 25 23 21 28 28 H 1.48504 * 109.47291 * 329.99753 * 25 23 21 29 29 H 1.09002 * 109.47123 * 179.57041 * 1 2 3 30 30 H 1.09005 * 109.46938 * 299.57028 * 1 2 3 31 31 H 1.09000 * 109.47110 * 59.56639 * 1 2 3 32 32 H 1.00897 * 111.00322 * 283.98031 * 6 4 2 33 33 H 1.08999 * 109.47411 * 300.00210 * 7 6 4 34 34 H 1.09009 * 109.47156 * 60.00081 * 7 6 4 35 35 H 1.08005 * 126.03290 * 359.97438 * 9 8 7 36 36 H 1.08005 * 126.12298 * 180.14505 * 10 9 8 37 37 H 1.09002 * 109.46999 * 270.02799 * 12 11 10 38 38 H 1.09000 * 109.46631 * 30.01852 * 12 11 10 39 39 H 1.08996 * 109.47396 * 150.02199 * 12 11 10 40 40 H 1.09002 * 111.00366 * 206.45412 * 14 4 2 41 41 H 1.09002 * 111.00429 * 82.64474 * 14 4 2 42 42 H 1.09000 * 110.36449 * 155.82966 * 15 14 4 43 43 H 1.09002 * 110.36898 * 278.14897 * 15 14 4 44 44 H 1.09006 * 109.46865 * 299.99965 * 19 17 16 45 45 H 1.08994 * 109.47167 * 60.00324 * 19 17 16 46 46 H 0.97000 * 119.99990 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0587 -0.7483 1.2425 5 1 1.3109 -1.4461 1.6193 6 7 2.4608 0.2004 2.2896 7 6 2.5098 -0.4552 3.6032 8 6 2.9243 0.5470 4.6496 9 6 2.0608 1.2932 5.4582 10 6 2.8164 2.0729 6.2658 11 7 4.1120 1.8352 5.9724 12 6 5.2699 2.4705 6.6062 13 7 4.1540 0.8734 4.9547 14 6 3.2918 -1.5107 0.6896 15 6 2.8176 -1.8764 -0.7390 16 7 2.0300 -0.7125 -1.1847 17 6 1.8061 -0.3598 -2.4661 18 8 1.1401 0.6222 -2.7172 19 6 2.3832 -1.1856 -3.5868 20 16 1.9101 -0.4602 -5.1762 21 6 2.6959 -1.5916 -6.2750 22 1 3.2582 -2.4251 -5.8805 23 6 2.5923 -1.4116 -7.6473 24 7 1.9067 -0.3961 -8.1280 25 14 3.4248 -2.6115 -8.8121 26 1 2.4881 -3.7171 -9.1367 27 1 3.8077 -1.9045 -10.0606 28 1 4.6407 -3.1668 -8.1650 29 1 -0.3633 -1.0277 -0.0077 30 1 -0.3633 0.5072 0.8939 31 1 -0.3633 0.5206 -0.8861 32 1 3.3458 0.6309 2.0670 33 1 1.5242 -0.8502 3.8492 34 1 3.2318 -1.2714 3.5752 35 1 0.9817 1.2529 5.4420 36 1 2.4484 2.7648 7.0090 37 1 5.5338 3.3746 6.0576 38 1 5.0238 2.7293 7.6361 39 1 6.1135 1.7804 6.5967 40 1 3.4921 -2.4073 1.2763 41 1 4.1686 -0.8639 0.6568 42 1 3.6742 -2.0287 -1.3957 43 1 2.1936 -2.7698 -0.7146 44 1 3.4700 -1.2014 -3.5041 45 1 1.9991 -2.2037 -3.5230 46 1 1.8346 -0.2701 -9.0870 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755660260.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:19 Heat of formation + Delta-G solvation = 51.836076 kcal Electronic energy + Delta-G solvation = -26004.105712 eV Core-core repulsion = 22249.915241 eV Total energy + Delta-G solvation = -3754.190472 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.49195 -40.07085 -37.75366 -35.52142 -33.45402 -32.40424 -31.65183 -30.86474 -30.34418 -28.68778 -27.65424 -25.58037 -25.45513 -23.98967 -22.74522 -21.54188 -21.07317 -20.06704 -18.83667 -17.63865 -17.37487 -16.77773 -16.31682 -15.83402 -15.49882 -15.03465 -14.78574 -14.76090 -14.62747 -14.15996 -13.90118 -13.85908 -13.65369 -13.14738 -13.03112 -12.92211 -12.73218 -12.68665 -12.52301 -12.43880 -12.28076 -11.95750 -11.65324 -11.53184 -11.15864 -11.04417 -10.99199 -10.93383 -10.77973 -10.72319 -9.78689 -9.68242 -9.27079 -9.04110 -8.90642 -8.67410 -8.41683 -8.19300 -6.46643 -6.18934 -3.89152 1.52091 2.13700 2.39928 2.95454 3.15216 3.24067 3.27845 3.32104 3.64140 3.94438 4.11202 4.22957 4.34322 4.42252 4.45120 4.61146 4.69775 4.77691 4.88558 4.94800 5.04924 5.12338 5.16102 5.19744 5.21912 5.40433 5.44720 5.49812 5.54089 5.54885 5.66628 5.69976 5.71840 5.82715 5.86531 5.96606 6.14758 6.18161 6.28743 6.40336 6.57948 6.64241 6.74543 7.02375 7.37519 7.62041 7.77330 8.37845 8.65705 9.26236 10.88496 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026543 B = 0.001825 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.637430 B =15342.223849 C =15608.887079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.147 3.853 3 H 0.080 0.920 4 C 0.084 3.916 5 H 0.098 0.902 6 N -0.671 5.671 7 C 0.143 3.857 8 C 0.077 3.923 9 C -0.253 4.253 10 C 0.049 3.951 11 N -0.377 5.377 12 C 0.102 3.898 13 N -0.293 5.293 14 C -0.166 4.166 15 C 0.104 3.896 16 N -0.624 5.624 17 C 0.549 3.451 18 O -0.513 6.513 19 C -0.147 4.147 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.349 0.651 33 H 0.093 0.907 34 H 0.047 0.953 35 H 0.149 0.851 36 H 0.173 0.827 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.780 0.288 32.744 32.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.043 3.957 3 H 0.098 0.902 4 C -0.027 4.027 5 H 0.116 0.884 6 N -0.303 5.303 7 C 0.013 3.987 8 C -0.090 4.090 9 C -0.282 4.282 10 C -0.097 4.097 11 N -0.159 5.159 12 C -0.040 4.040 13 N -0.116 5.116 14 C -0.206 4.206 15 C -0.020 4.020 16 N -0.362 5.362 17 C 0.338 3.662 18 O -0.387 6.387 19 C -0.297 4.297 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.168 0.832 33 H 0.111 0.889 34 H 0.065 0.935 35 H 0.166 0.834 36 H 0.190 0.810 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.436 2.023 32.062 32.309 hybrid contribution 1.384 -2.208 -0.242 2.617 sum 4.820 -0.185 31.820 32.183 Atomic orbital electron populations 1.22075 0.94449 1.01898 1.03119 1.21349 0.94743 0.96518 0.83129 0.90243 1.22697 0.96464 0.92611 0.90933 0.88384 1.60355 1.37615 1.31770 1.00527 1.20212 1.01197 0.91787 0.85524 1.22142 0.90472 0.98542 0.97808 1.21394 1.00771 1.03748 1.02295 1.22549 0.84159 1.01457 1.01531 1.48474 1.05708 1.32312 1.29436 1.21856 0.86809 0.98076 0.97252 1.77298 1.21393 1.07301 1.05645 1.23537 0.98865 1.01694 0.96473 1.22185 0.95632 0.89280 0.94874 1.48584 1.53804 1.28836 1.04957 1.19966 0.79877 0.85004 0.81358 1.90695 1.38484 1.26935 1.82559 1.23515 1.03580 1.02649 1.00002 1.85395 1.69447 1.37883 0.90621 1.22865 1.38120 1.14208 0.93121 0.90977 1.24985 0.95281 0.95965 0.97346 1.70018 1.38509 1.28090 1.13643 0.86175 0.79460 0.80261 0.79637 1.20277 1.20759 1.19724 0.92967 0.91604 0.90941 0.83194 0.88851 0.93471 0.83371 0.80964 0.90673 0.89502 0.89343 0.89927 0.90364 0.90319 0.91321 0.89452 0.89391 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.12 37.16 0.34 -1.71 16 2 C 0.15 1.90 3.21 -66.93 -0.21 1.68 16 3 H 0.08 1.17 8.03 -51.93 -0.42 0.75 16 4 C 0.08 0.77 2.77 -65.85 -0.18 0.59 16 5 H 0.10 0.80 7.62 -51.93 -0.40 0.40 16 6 N -0.67 -6.05 6.27 -106.02 -0.66 -6.72 16 7 C 0.14 1.13 6.10 -4.98 -0.03 1.10 16 8 C 0.08 0.73 6.73 -82.41 -0.55 0.18 16 9 C -0.25 -2.09 10.74 -40.02 -0.43 -2.52 16 10 C 0.05 0.34 11.49 -17.23 -0.20 0.14 16 11 N -0.38 -3.04 4.01 -68.16 -0.27 -3.31 16 12 C 0.10 0.40 11.47 59.85 0.69 1.09 16 13 N -0.29 -3.10 12.58 33.67 0.42 -2.67 16 14 C -0.17 -1.42 6.63 -24.58 -0.16 -1.58 16 15 C 0.10 1.15 6.69 -2.53 -0.02 1.13 16 16 N -0.62 -9.32 3.07 -162.99 -0.50 -9.81 16 17 C 0.55 10.91 7.66 -10.99 -0.08 10.83 16 18 O -0.51 -12.11 14.89 5.56 0.08 -12.02 16 19 C -0.15 -3.09 5.16 36.01 0.19 -2.91 16 20 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 21 C -0.53 -15.45 9.50 30.94 0.29 -15.15 16 22 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -26.43 13.22 55.49 0.73 -25.70 16 25 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.18 6.87 -51.93 -0.36 0.82 16 32 H 0.35 3.40 8.29 -39.29 -0.33 3.07 16 33 H 0.09 0.62 8.09 -51.93 -0.42 0.20 16 34 H 0.05 0.36 8.13 -51.92 -0.42 -0.07 16 35 H 0.15 1.00 8.06 -52.48 -0.42 0.58 16 36 H 0.17 0.56 8.06 -52.48 -0.42 0.14 16 37 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 39 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.70 7.81 -51.93 -0.41 0.29 16 42 H 0.08 0.87 7.48 -51.93 -0.39 0.48 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 1.72 7.85 -51.91 -0.41 1.31 16 45 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 46 H 0.27 7.58 8.31 -40.82 -0.34 7.25 16 LS Contribution 395.78 15.07 5.96 5.96 Total: -1.00 -36.93 395.78 -9.24 -46.17 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -7.31 Total: 0.50 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -0.46 Total: -5.12 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: -0.28 Total: -48.21 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.08 Total: -12.02 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.93 -9.24 -46.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755660260.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.009 kcal (2) G-P(sol) polarization free energy of solvation -36.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds