Wall clock time and date at job start Tue Mar 31 2020 20:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.87730 * 2 1 4 4 C 1.54383 * 110.02964 * 121.05685 * 2 1 3 5 5 H 1.08999 * 110.70275 * 23.30582 * 4 2 1 6 6 N 1.46899 * 110.75492 * 260.01576 * 4 2 1 7 7 C 1.46900 * 110.99597 * 160.02831 * 6 4 2 8 8 C 1.50700 * 109.47304 * 180.02562 * 7 6 4 9 9 C 1.39867 * 125.90339 * 94.71206 * 8 7 6 10 10 C 1.35312 * 107.91995 * 179.86789 * 9 8 7 11 11 N 1.34945 * 107.75061 * 0.39736 * 10 9 8 12 12 C 1.46498 * 126.04217 * 179.75176 * 11 10 9 13 13 N 1.30836 * 125.89519 * 275.02870 * 8 7 6 14 14 C 1.55158 * 102.91824 * 141.64798 * 4 2 1 15 15 C 1.54909 * 101.61642 * 324.54893 * 14 4 2 16 16 N 1.47016 * 109.88556 * 238.97612 * 2 1 3 17 17 C 1.34774 * 125.64624 * 61.51952 * 16 2 1 18 18 O 1.21282 * 120.00096 * 359.97438 * 17 16 2 19 19 C 1.50703 * 119.99909 * 179.97438 * 17 16 2 20 20 S 1.81002 * 109.47234 * 180.02562 * 19 17 16 21 21 C 1.76200 * 100.00249 * 179.97438 * 20 19 17 22 22 H 1.08004 * 119.99642 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00002 * 180.02562 * 21 20 19 24 24 N 1.31623 * 120.00006 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99836 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47525 * 89.99854 * 25 23 21 27 27 H 1.48503 * 109.47197 * 209.99861 * 25 23 21 28 28 H 1.48504 * 109.47291 * 329.99753 * 25 23 21 29 29 H 1.09002 * 109.47123 * 179.57041 * 1 2 3 30 30 H 1.09005 * 109.46938 * 299.57028 * 1 2 3 31 31 H 1.09000 * 109.47110 * 59.56639 * 1 2 3 32 32 H 1.00897 * 111.00322 * 283.98031 * 6 4 2 33 33 H 1.08999 * 109.47411 * 300.00210 * 7 6 4 34 34 H 1.09009 * 109.47156 * 60.00081 * 7 6 4 35 35 H 1.08005 * 126.03290 * 359.97438 * 9 8 7 36 36 H 1.08005 * 126.12298 * 180.14505 * 10 9 8 37 37 H 1.09002 * 109.46999 * 270.02799 * 12 11 10 38 38 H 1.09000 * 109.46631 * 30.01852 * 12 11 10 39 39 H 1.08996 * 109.47396 * 150.02199 * 12 11 10 40 40 H 1.09002 * 111.00366 * 206.45412 * 14 4 2 41 41 H 1.09002 * 111.00429 * 82.64474 * 14 4 2 42 42 H 1.09000 * 110.36449 * 155.82966 * 15 14 4 43 43 H 1.09002 * 110.36898 * 278.14897 * 15 14 4 44 44 H 1.09006 * 109.46865 * 299.99965 * 19 17 16 45 45 H 1.08994 * 109.47167 * 60.00324 * 19 17 16 46 46 H 0.97000 * 119.99990 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0587 -0.7483 1.2425 5 1 1.3109 -1.4461 1.6193 6 7 2.4608 0.2004 2.2896 7 6 2.5098 -0.4552 3.6032 8 6 2.9243 0.5470 4.6496 9 6 2.0608 1.2932 5.4582 10 6 2.8164 2.0729 6.2658 11 7 4.1120 1.8352 5.9724 12 6 5.2699 2.4705 6.6062 13 7 4.1540 0.8734 4.9547 14 6 3.2918 -1.5107 0.6896 15 6 2.8176 -1.8764 -0.7390 16 7 2.0300 -0.7125 -1.1847 17 6 1.8061 -0.3598 -2.4661 18 8 1.1401 0.6222 -2.7172 19 6 2.3832 -1.1856 -3.5868 20 16 1.9101 -0.4602 -5.1762 21 6 2.6959 -1.5916 -6.2750 22 1 3.2582 -2.4251 -5.8805 23 6 2.5923 -1.4116 -7.6473 24 7 1.9067 -0.3961 -8.1280 25 14 3.4248 -2.6115 -8.8121 26 1 2.4881 -3.7171 -9.1367 27 1 3.8077 -1.9045 -10.0606 28 1 4.6407 -3.1668 -8.1650 29 1 -0.3633 -1.0277 -0.0077 30 1 -0.3633 0.5072 0.8939 31 1 -0.3633 0.5206 -0.8861 32 1 3.3458 0.6309 2.0670 33 1 1.5242 -0.8502 3.8492 34 1 3.2318 -1.2714 3.5752 35 1 0.9817 1.2529 5.4420 36 1 2.4484 2.7648 7.0090 37 1 5.5338 3.3746 6.0576 38 1 5.0238 2.7293 7.6361 39 1 6.1135 1.7804 6.5967 40 1 3.4921 -2.4073 1.2763 41 1 4.1686 -0.8639 0.6568 42 1 3.6742 -2.0287 -1.3957 43 1 2.1936 -2.7698 -0.7146 44 1 3.4700 -1.2014 -3.5041 45 1 1.9991 -2.2037 -3.5230 46 1 1.8346 -0.2701 -9.0870 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755660260.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:18 Heat of formation + Delta-G solvation = 25.322759 kcal Electronic energy + Delta-G solvation = -26005.255416 eV Core-core repulsion = 22249.915241 eV Total energy + Delta-G solvation = -3755.340175 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.04333 -41.26235 -39.00522 -36.39049 -34.59332 -34.11580 -32.74827 -31.82032 -30.97762 -30.02199 -28.40457 -27.65592 -26.27658 -24.72770 -23.86446 -22.14193 -21.85521 -20.76658 -20.24716 -19.44514 -18.09560 -17.92418 -17.41371 -16.88732 -16.61026 -16.46493 -15.99951 -15.99023 -15.60993 -15.39533 -14.88414 -14.64435 -14.58393 -14.48567 -14.04319 -13.86191 -13.72516 -13.46120 -13.43438 -13.19631 -13.16546 -13.08990 -12.97199 -12.88864 -12.68534 -12.62934 -12.49320 -11.99049 -11.76841 -11.67763 -11.53625 -11.14665 -10.86239 -10.28943 -10.26326 -9.68972 -9.46650 -9.33966 -8.68294 -8.34927 -6.13714 0.96806 1.23651 1.42334 1.44371 1.55646 1.59749 1.70768 1.81291 2.10351 2.27029 2.99032 3.19623 3.25385 3.50777 3.56403 3.71933 3.93759 3.94657 4.05001 4.20919 4.21931 4.26268 4.33168 4.40016 4.42800 4.44436 4.46332 4.62519 4.65650 4.70388 4.75494 4.77812 4.89005 4.97589 5.00484 5.07852 5.11689 5.18462 5.30037 5.40940 5.48056 5.72235 6.01780 6.19270 6.20016 6.27984 6.43520 6.79659 7.05903 7.16093 8.74429 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026543 B = 0.001825 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.637430 B =15342.223849 C =15608.887079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.141 3.859 3 H 0.056 0.944 4 C 0.100 3.900 5 H 0.120 0.880 6 N -0.677 5.677 7 C 0.148 3.852 8 C 0.063 3.937 9 C -0.277 4.277 10 C 0.054 3.946 11 N -0.384 5.384 12 C 0.093 3.907 13 N -0.334 5.334 14 C -0.153 4.153 15 C 0.093 3.907 16 N -0.614 5.614 17 C 0.546 3.454 18 O -0.563 6.563 19 C -0.119 4.119 20 S -0.151 6.151 21 C -0.547 4.547 22 H 0.083 0.917 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 1.000 3.000 26 H -0.267 1.267 27 H -0.277 1.277 28 H -0.258 1.258 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.031 0.969 32 H 0.343 0.657 33 H 0.108 0.892 34 H 0.053 0.947 35 H 0.159 0.841 36 H 0.209 0.791 37 H 0.080 0.920 38 H 0.117 0.883 39 H 0.086 0.914 40 H 0.114 0.886 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.103 0.897 45 H 0.106 0.894 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.926 -1.832 35.208 35.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.037 3.963 3 H 0.074 0.926 4 C -0.011 4.011 5 H 0.138 0.862 6 N -0.308 5.308 7 C 0.018 3.982 8 C -0.103 4.103 9 C -0.306 4.306 10 C -0.092 4.092 11 N -0.166 5.166 12 C -0.047 4.047 13 N -0.158 5.158 14 C -0.193 4.193 15 C -0.029 4.029 16 N -0.350 5.350 17 C 0.334 3.666 18 O -0.441 6.441 19 C -0.271 4.271 20 S 0.077 5.923 21 C -0.694 4.694 22 H 0.101 0.899 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.821 3.179 26 H -0.192 1.192 27 H -0.203 1.203 28 H -0.182 1.182 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.050 0.950 32 H 0.162 0.838 33 H 0.127 0.873 34 H 0.071 0.929 35 H 0.176 0.824 36 H 0.226 0.774 37 H 0.098 0.902 38 H 0.135 0.865 39 H 0.104 0.896 40 H 0.132 0.868 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.108 0.892 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.610 -0.129 34.591 34.897 hybrid contribution 1.039 -1.479 -0.808 1.980 sum 5.649 -1.608 33.783 34.290 Atomic orbital electron populations 1.21994 0.94510 1.02269 1.02053 1.21527 0.94761 0.95931 0.84046 0.92583 1.22552 0.97160 0.92152 0.89244 0.86232 1.60293 1.37392 1.32031 1.01041 1.20258 1.02148 0.91460 0.84338 1.22442 0.90543 0.98995 0.98300 1.21694 1.01498 1.04446 1.02962 1.23153 0.83651 1.01052 1.01385 1.48825 1.07070 1.31819 1.28912 1.22149 0.85878 0.97884 0.98761 1.77212 1.22305 1.09002 1.07313 1.23513 0.98114 1.02748 0.94878 1.22572 0.95642 0.88357 0.96373 1.48522 1.52905 1.29730 1.03807 1.19743 0.79712 0.84374 0.82786 1.90677 1.40876 1.28974 1.83623 1.23309 1.04479 1.02911 0.96352 1.85593 1.70668 1.40292 0.95788 1.23194 1.38238 1.14311 0.93687 0.89936 1.26146 0.95763 0.97933 0.99311 1.70187 1.40084 1.30289 1.14194 0.84937 0.78642 0.77487 0.76798 1.19190 1.20252 1.18181 0.91740 0.89713 0.94955 0.83845 0.87349 0.92871 0.82382 0.77444 0.90168 0.86453 0.89560 0.86766 0.90813 0.90099 0.89172 0.87840 0.87551 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.88 9.12 71.98 0.66 -3.22 16 2 C 0.14 3.56 3.21 45.36 0.15 3.70 16 3 H 0.06 1.69 8.03 -2.39 -0.02 1.67 16 4 C 0.10 1.58 2.77 46.12 0.13 1.71 16 5 H 0.12 1.47 7.62 -2.39 -0.02 1.45 16 6 N -0.68 -11.06 6.27 -489.33 -3.07 -14.13 16 7 C 0.15 2.02 6.10 85.56 0.52 2.54 16 8 C 0.06 1.12 6.73 43.10 0.29 1.41 16 9 C -0.28 -4.17 10.74 21.99 0.24 -3.93 16 10 C 0.05 0.64 11.49 83.54 0.96 1.60 16 11 N -0.38 -5.63 4.01 -369.57 -1.48 -7.12 16 12 C 0.09 0.59 11.47 127.77 1.47 2.05 16 13 N -0.33 -6.79 12.58 -47.39 -0.60 -7.39 16 14 C -0.15 -2.13 6.63 31.99 0.21 -1.92 16 15 C 0.09 1.80 6.69 86.86 0.58 2.38 16 16 N -0.61 -17.90 3.07 -787.96 -2.42 -20.31 16 17 C 0.55 22.08 7.66 87.66 0.67 22.75 16 18 O -0.56 -28.00 14.89 -3.03 -0.05 -28.05 16 19 C -0.12 -5.04 5.16 71.24 0.37 -4.67 16 20 S -0.15 -8.65 20.57 -56.49 -1.16 -9.81 16 21 C -0.55 -31.85 9.50 67.95 0.65 -31.20 16 22 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 23 C 0.01 0.76 5.49 84.86 0.47 1.23 16 24 N -0.91 -56.84 13.22 21.65 0.29 -56.56 16 25 Si 1.00 44.14 29.55 68.60 2.03 46.16 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 27 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 28 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 29 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.03 1.09 6.87 -2.39 -0.02 1.07 16 32 H 0.34 6.37 8.29 -89.70 -0.74 5.62 16 33 H 0.11 1.12 8.09 -2.39 -0.02 1.11 16 34 H 0.05 0.66 8.13 -2.38 -0.02 0.64 16 35 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 36 H 0.21 0.69 8.06 -2.91 -0.02 0.67 16 37 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 39 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.07 1.14 7.81 -2.39 -0.02 1.12 16 42 H 0.08 1.57 7.48 -2.39 -0.02 1.55 16 43 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.10 4.00 7.85 -2.39 -0.02 3.98 16 45 H 0.11 4.07 8.14 -2.40 -0.02 4.05 16 46 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -84.92 395.78 1.12 -83.80 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.23 Total: 18.97 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 7.35 Total: -5.58 kcal Atomic # 7 Polarization: -98.22 SS G_CDS: -7.28 Total: -105.50 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.05 Total: -28.05 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.81 kcal Total: -84.92 1.12 -83.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755660260.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.122 kcal (2) G-P(sol) polarization free energy of solvation -84.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds