Wall clock time and date at job start Tue Mar 31 2020 20:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.87501 * 2 1 4 4 C 1.54323 * 109.87970 * 121.01243 * 2 1 3 5 5 H 1.08997 * 110.72451 * 23.24595 * 4 2 1 6 6 N 1.46900 * 110.72303 * 259.97269 * 4 2 1 7 7 C 1.46897 * 111.00456 * 160.02429 * 6 4 2 8 8 C 1.50697 * 109.47223 * 180.02562 * 7 6 4 9 9 N 1.30493 * 125.65165 * 90.03179 * 8 7 6 10 10 C 1.34124 * 109.26101 * 180.02562 * 9 8 7 11 11 C 1.34667 * 108.01643 * 359.97438 * 10 9 8 12 12 N 1.35045 * 125.64659 * 269.71725 * 8 7 6 13 13 C 1.46498 * 126.40359 * 0.02562 * 12 8 7 14 14 C 1.55157 * 102.94177 * 141.61239 * 4 2 1 15 15 C 1.54918 * 101.58155 * 324.49419 * 14 4 2 16 16 N 1.47019 * 109.88029 * 238.82065 * 2 1 3 17 17 C 1.34775 * 125.65308 * 61.69210 * 16 2 1 18 18 O 1.21287 * 119.99249 * 359.97438 * 17 16 2 19 19 C 1.50695 * 120.00377 * 179.97438 * 17 16 2 20 20 S 1.80998 * 109.47235 * 179.97438 * 19 17 16 21 21 C 1.76195 * 100.00362 * 180.02562 * 20 19 17 22 22 H 1.08006 * 119.99452 * 359.97438 * 21 20 19 23 23 C 1.38797 * 120.00432 * 180.02562 * 21 20 19 24 24 N 1.31626 * 120.00175 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 119.99851 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.47007 * 90.00284 * 25 23 21 27 27 H 1.48494 * 109.47240 * 210.00416 * 25 23 21 28 28 H 1.48503 * 109.47223 * 330.00335 * 25 23 21 29 29 H 1.09003 * 109.47312 * 298.98922 * 1 2 3 30 30 H 1.09004 * 109.47322 * 58.98559 * 1 2 3 31 31 H 1.09000 * 109.47636 * 178.98591 * 1 2 3 32 32 H 1.00901 * 110.99644 * 36.06486 * 6 4 2 33 33 H 1.08994 * 109.47260 * 300.00339 * 7 6 4 34 34 H 1.09010 * 109.46830 * 59.99962 * 7 6 4 35 35 H 1.07999 * 125.99461 * 180.02562 * 10 9 8 36 36 H 1.08012 * 126.59340 * 180.02562 * 11 10 9 37 37 H 1.08997 * 109.46974 * 89.99357 * 13 12 8 38 38 H 1.08998 * 109.47419 * 210.00307 * 13 12 8 39 39 H 1.09000 * 109.47062 * 330.00259 * 13 12 8 40 40 H 1.09001 * 111.00846 * 82.57128 * 14 4 2 41 41 H 1.09000 * 111.00346 * 206.42659 * 14 4 2 42 42 H 1.08998 * 110.36791 * 155.84693 * 15 14 4 43 43 H 1.08991 * 110.36593 * 278.17392 * 15 14 4 44 44 H 1.09002 * 109.46939 * 300.00090 * 19 17 16 45 45 H 1.08999 * 109.47228 * 59.99825 * 19 17 16 46 46 H 0.97005 * 120.00049 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0547 -0.7477 1.2438 5 1 1.3050 -1.4436 1.6204 6 7 2.4565 0.2019 2.2901 7 6 2.5019 -0.4515 3.6050 8 6 2.9161 0.5517 4.6504 9 7 2.1080 1.3102 5.3392 10 6 2.8248 2.0771 6.1740 11 6 4.1267 1.7822 5.9961 12 7 4.1849 0.8103 5.0340 13 6 5.3973 0.1732 4.5141 14 6 3.2875 -1.5132 0.6947 15 6 2.8145 -1.8806 -0.7341 16 7 2.0299 -0.7158 -1.1829 17 6 1.8087 -0.3648 -2.4652 18 8 1.1455 0.6185 -2.7188 19 6 2.3853 -1.1939 -3.5836 20 16 1.9150 -0.4710 -5.1749 21 6 2.6984 -1.6068 -6.2706 22 1 3.2590 -2.4404 -5.8739 23 6 2.5961 -1.4298 -7.6434 24 7 3.1810 -2.2787 -8.4619 25 14 1.6272 0.0124 -8.3295 26 1 2.5293 1.1802 -8.4964 27 1 1.0508 -0.3601 -9.6463 28 1 0.5312 0.3636 -7.3910 29 1 -0.3634 0.4981 0.8989 30 1 -0.3634 0.5295 -0.8808 31 1 -0.3634 -1.0275 -0.0182 32 1 1.8437 1.0034 2.3055 33 1 1.5151 -0.8444 3.8498 34 1 3.2224 -1.2691 3.5797 35 1 2.4276 2.8032 6.8678 36 1 4.9639 2.2242 6.5162 37 1 5.7688 0.7410 3.6611 38 1 6.1583 0.1494 5.2941 39 1 5.1668 -0.8448 4.2002 40 1 4.1654 -0.8679 0.6617 41 1 3.4851 -2.4092 1.2831 42 1 3.6715 -2.0359 -1.3893 43 1 2.1886 -2.7725 -0.7088 44 1 3.4719 -1.2123 -3.4993 45 1 1.9986 -2.2110 -3.5186 46 1 3.1091 -2.1551 -9.4214 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755666011.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:00 Heat of formation + Delta-G solvation = 36.461897 kcal Electronic energy + Delta-G solvation = -26424.801105 eV Core-core repulsion = 22669.943959 eV Total energy + Delta-G solvation = -3754.857146 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.42092 -40.22606 -37.87984 -35.44055 -34.36154 -32.44221 -32.06426 -31.31521 -29.91414 -28.48318 -27.45911 -26.20819 -25.61377 -24.39237 -22.92422 -21.73308 -20.92171 -20.21896 -19.06736 -17.65337 -17.54066 -17.02363 -16.38489 -16.08811 -15.92248 -15.17125 -14.97662 -14.84695 -14.52883 -14.51598 -14.01592 -13.86121 -13.77073 -13.56861 -13.24953 -13.15526 -13.00181 -12.87452 -12.73627 -12.67430 -12.38793 -11.96549 -11.82044 -11.57570 -11.28387 -11.24950 -11.00917 -10.87574 -10.60276 -10.33666 -9.95694 -9.85594 -9.46500 -9.04819 -9.00406 -8.73405 -8.58984 -8.49378 -6.91929 -6.29100 -4.00729 1.62806 2.40359 2.63418 2.77185 2.96080 3.17141 3.33445 3.50913 3.58244 3.76036 4.06141 4.17320 4.28340 4.33294 4.35835 4.38398 4.64267 4.70661 4.76064 4.82565 4.95550 4.99536 5.04348 5.08784 5.10055 5.16276 5.18652 5.29137 5.33933 5.40150 5.49124 5.52009 5.61512 5.76549 5.85642 5.91394 5.92865 6.01085 6.17692 6.38921 6.41141 6.52542 6.77217 6.84555 7.59343 7.74573 7.93906 8.41136 8.45683 9.17176 10.80039 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027116 B = 0.002005 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.335057 B =13962.312756 C =14295.872529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 H 0.082 0.918 4 C 0.078 3.922 5 H 0.067 0.933 6 N -0.674 5.674 7 C 0.146 3.854 8 C 0.207 3.793 9 N -0.488 5.488 10 C -0.028 4.028 11 C -0.057 4.057 12 N -0.448 5.448 13 C 0.073 3.927 14 C -0.122 4.122 15 C 0.099 3.901 16 N -0.618 5.618 17 C 0.548 3.452 18 O -0.515 6.515 19 C -0.117 4.117 20 S -0.142 6.142 21 C -0.521 4.521 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.880 5.880 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.353 0.647 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.170 0.830 36 H 0.174 0.826 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.775 1.482 30.825 31.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.035 3.965 3 H 0.100 0.900 4 C -0.033 4.033 5 H 0.085 0.915 6 N -0.308 5.308 7 C 0.015 3.985 8 C -0.055 4.055 9 N -0.208 5.208 10 C -0.177 4.177 11 C -0.191 4.191 12 N -0.130 5.130 13 C -0.069 4.069 14 C -0.161 4.161 15 C -0.025 4.025 16 N -0.356 5.356 17 C 0.337 3.663 18 O -0.390 6.390 19 C -0.268 4.268 20 S 0.084 5.916 21 C -0.668 4.668 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.517 5.517 25 Si 0.681 3.319 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.159 1.159 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.173 0.827 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.187 0.813 36 H 0.191 0.809 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.087 0.913 44 H 0.114 0.886 45 H 0.114 0.886 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.768 2.755 29.917 30.170 hybrid contribution 0.647 -0.735 0.147 0.990 sum 3.415 2.019 30.064 30.324 Atomic orbital electron populations 1.22192 0.94632 1.02448 1.03143 1.21477 0.94331 0.96758 0.83894 0.89963 1.22641 0.96361 0.93579 0.90669 0.91528 1.60538 1.57893 1.09766 1.02585 1.20165 1.01269 0.92244 0.84780 1.22989 0.79949 1.01819 1.00751 1.70229 1.33092 1.08482 1.08956 1.22289 0.89924 1.02997 1.02489 1.22743 1.00454 0.97412 0.98443 1.45231 1.07824 1.29979 1.30005 1.22059 0.85072 0.99135 1.00666 1.22858 0.98257 1.00238 0.94734 1.22334 0.95754 0.88989 0.95383 1.48437 1.53852 1.28711 1.04585 1.19964 0.79870 0.85038 0.81451 1.90696 1.38742 1.26968 1.82551 1.23254 1.04011 1.02419 0.97092 1.84796 1.70882 1.40300 0.95580 1.22305 1.37880 1.13790 0.92846 0.89405 1.24709 0.94545 0.96235 0.95829 1.69937 1.42269 1.35910 1.03566 0.86735 0.82262 0.82768 0.80093 1.19204 1.19948 1.15919 0.92072 0.90499 0.92452 0.82695 0.91668 0.89432 0.81317 0.80871 0.89941 0.89807 0.89428 0.89484 0.90216 0.89942 0.91262 0.88632 0.88590 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 9.10 37.16 0.34 -1.58 16 2 C 0.14 1.60 2.98 -66.96 -0.20 1.40 16 3 H 0.08 1.06 7.97 -51.93 -0.41 0.65 16 4 C 0.08 0.62 2.76 -65.88 -0.18 0.44 16 5 H 0.07 0.49 7.61 -51.93 -0.40 0.09 16 6 N -0.67 -5.22 6.29 -106.06 -0.67 -5.88 16 7 C 0.15 1.00 5.85 -4.98 -0.03 0.97 16 8 C 0.21 1.86 7.41 -155.42 -1.15 0.71 16 9 N -0.49 -5.39 11.25 -10.82 -0.12 -5.51 16 10 C -0.03 -0.26 11.87 -17.81 -0.21 -0.47 16 11 C -0.06 -0.41 11.58 -16.56 -0.19 -0.60 16 12 N -0.45 -3.26 3.15 -121.28 -0.38 -3.64 16 13 C 0.07 0.28 10.97 59.85 0.66 0.94 16 14 C -0.12 -0.89 6.71 -24.58 -0.16 -1.05 16 15 C 0.10 0.97 6.69 -2.52 -0.02 0.95 16 16 N -0.62 -8.37 3.06 -163.02 -0.50 -8.87 16 17 C 0.55 10.02 7.66 -10.99 -0.08 9.94 16 18 O -0.52 -11.25 14.91 5.55 0.08 -11.17 16 19 C -0.12 -2.30 5.16 36.00 0.19 -2.11 16 20 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 21 C -0.52 -14.99 10.04 30.94 0.31 -14.68 16 22 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 23 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 24 N -0.88 -26.51 13.97 55.49 0.78 -25.73 16 25 Si 0.86 21.85 27.74 -169.99 -4.71 17.14 16 26 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 1.13 6.91 -51.93 -0.36 0.78 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.35 3.10 8.44 -39.29 -0.33 2.77 16 33 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 34 H 0.09 0.44 7.05 -51.92 -0.37 0.08 16 35 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.17 0.69 8.06 -52.48 -0.42 0.27 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 39 H 0.09 0.24 7.04 -51.93 -0.37 -0.13 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.80 7.47 -51.93 -0.39 0.41 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.10 1.75 7.85 -51.92 -0.41 1.34 16 45 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 46 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 390.19 15.07 5.88 5.88 Total: -1.00 -36.15 390.19 -9.73 -45.88 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -7.25 Total: -0.04 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -0.84 Total: -2.46 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.90 Total: -49.63 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.08 Total: -11.17 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.14 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.15 -9.73 -45.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755666011.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.347 kcal (2) G-P(sol) polarization free energy of solvation -36.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds