Wall clock time and date at job start Tue Mar 31 2020 20:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.87501 * 2 1 4 4 C 1.54323 * 109.87970 * 121.01243 * 2 1 3 5 5 H 1.08997 * 110.72451 * 23.24595 * 4 2 1 6 6 N 1.46900 * 110.72303 * 259.97269 * 4 2 1 7 7 C 1.46897 * 111.00456 * 160.02429 * 6 4 2 8 8 C 1.50697 * 109.47223 * 180.02562 * 7 6 4 9 9 N 1.30493 * 125.65165 * 90.03179 * 8 7 6 10 10 C 1.34124 * 109.26101 * 180.02562 * 9 8 7 11 11 C 1.34667 * 108.01643 * 359.97438 * 10 9 8 12 12 N 1.35045 * 125.64659 * 269.71725 * 8 7 6 13 13 C 1.46498 * 126.40359 * 0.02562 * 12 8 7 14 14 C 1.55157 * 102.94177 * 141.61239 * 4 2 1 15 15 C 1.54918 * 101.58155 * 324.49419 * 14 4 2 16 16 N 1.47019 * 109.88029 * 238.82065 * 2 1 3 17 17 C 1.34775 * 125.65308 * 61.69210 * 16 2 1 18 18 O 1.21287 * 119.99249 * 359.97438 * 17 16 2 19 19 C 1.50695 * 120.00377 * 179.97438 * 17 16 2 20 20 S 1.80998 * 109.47235 * 179.97438 * 19 17 16 21 21 C 1.76195 * 100.00362 * 180.02562 * 20 19 17 22 22 H 1.08006 * 119.99452 * 359.97438 * 21 20 19 23 23 C 1.38797 * 120.00432 * 180.02562 * 21 20 19 24 24 N 1.31626 * 120.00175 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 119.99851 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.47007 * 90.00284 * 25 23 21 27 27 H 1.48494 * 109.47240 * 210.00416 * 25 23 21 28 28 H 1.48503 * 109.47223 * 330.00335 * 25 23 21 29 29 H 1.09003 * 109.47312 * 298.98922 * 1 2 3 30 30 H 1.09004 * 109.47322 * 58.98559 * 1 2 3 31 31 H 1.09000 * 109.47636 * 178.98591 * 1 2 3 32 32 H 1.00901 * 110.99644 * 36.06486 * 6 4 2 33 33 H 1.08994 * 109.47260 * 300.00339 * 7 6 4 34 34 H 1.09010 * 109.46830 * 59.99962 * 7 6 4 35 35 H 1.07999 * 125.99461 * 180.02562 * 10 9 8 36 36 H 1.08012 * 126.59340 * 180.02562 * 11 10 9 37 37 H 1.08997 * 109.46974 * 89.99357 * 13 12 8 38 38 H 1.08998 * 109.47419 * 210.00307 * 13 12 8 39 39 H 1.09000 * 109.47062 * 330.00259 * 13 12 8 40 40 H 1.09001 * 111.00846 * 82.57128 * 14 4 2 41 41 H 1.09000 * 111.00346 * 206.42659 * 14 4 2 42 42 H 1.08998 * 110.36791 * 155.84693 * 15 14 4 43 43 H 1.08991 * 110.36593 * 278.17392 * 15 14 4 44 44 H 1.09002 * 109.46939 * 300.00090 * 19 17 16 45 45 H 1.08999 * 109.47228 * 59.99825 * 19 17 16 46 46 H 0.97005 * 120.00049 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0547 -0.7477 1.2438 5 1 1.3050 -1.4436 1.6204 6 7 2.4565 0.2019 2.2901 7 6 2.5019 -0.4515 3.6050 8 6 2.9161 0.5517 4.6504 9 7 2.1080 1.3102 5.3392 10 6 2.8248 2.0771 6.1740 11 6 4.1267 1.7822 5.9961 12 7 4.1849 0.8103 5.0340 13 6 5.3973 0.1732 4.5141 14 6 3.2875 -1.5132 0.6947 15 6 2.8145 -1.8806 -0.7341 16 7 2.0299 -0.7158 -1.1829 17 6 1.8087 -0.3648 -2.4652 18 8 1.1455 0.6185 -2.7188 19 6 2.3853 -1.1939 -3.5836 20 16 1.9150 -0.4710 -5.1749 21 6 2.6984 -1.6068 -6.2706 22 1 3.2590 -2.4404 -5.8739 23 6 2.5961 -1.4298 -7.6434 24 7 3.1810 -2.2787 -8.4619 25 14 1.6272 0.0124 -8.3295 26 1 2.5293 1.1802 -8.4964 27 1 1.0508 -0.3601 -9.6463 28 1 0.5312 0.3636 -7.3910 29 1 -0.3634 0.4981 0.8989 30 1 -0.3634 0.5295 -0.8808 31 1 -0.3634 -1.0275 -0.0182 32 1 1.8437 1.0034 2.3055 33 1 1.5151 -0.8444 3.8498 34 1 3.2224 -1.2691 3.5797 35 1 2.4276 2.8032 6.8678 36 1 4.9639 2.2242 6.5162 37 1 5.7688 0.7410 3.6611 38 1 6.1583 0.1494 5.2941 39 1 5.1668 -0.8448 4.2002 40 1 4.1654 -0.8679 0.6617 41 1 3.4851 -2.4092 1.2831 42 1 3.6715 -2.0359 -1.3893 43 1 2.1886 -2.7725 -0.7088 44 1 3.4719 -1.2123 -3.4993 45 1 1.9986 -2.2110 -3.5186 46 1 3.1091 -2.1551 -9.4214 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755666011.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:59 Heat of formation + Delta-G solvation = 11.205943 kcal Electronic energy + Delta-G solvation = -26425.896286 eV Core-core repulsion = 22669.943959 eV Total energy + Delta-G solvation = -3755.952326 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.96490 -41.31180 -39.01809 -36.25738 -34.85323 -34.67824 -33.08026 -32.14513 -30.86224 -29.62866 -27.89230 -27.83725 -26.86411 -25.09053 -23.95070 -22.27979 -21.66501 -20.89312 -20.33123 -19.47528 -18.17484 -18.04928 -17.48593 -17.11990 -16.72394 -16.58321 -16.42563 -15.88525 -15.52082 -15.38887 -15.00141 -14.90530 -14.75573 -14.57119 -14.30005 -14.07777 -13.81171 -13.66467 -13.65172 -13.38447 -13.34282 -13.21148 -13.02249 -12.97685 -12.78982 -12.56698 -12.34081 -11.97459 -11.87869 -11.66541 -11.17801 -10.95255 -10.92962 -10.54021 -10.50010 -9.74520 -9.60692 -9.30044 -9.01256 -8.52098 -6.23058 0.94956 1.09101 1.30497 1.44572 1.52269 1.53487 1.95256 2.02482 2.16202 2.24410 2.67809 2.86041 3.13825 3.29823 3.56170 3.64272 3.79320 3.92680 4.02445 4.04203 4.16557 4.26058 4.29253 4.35728 4.40465 4.43021 4.46742 4.53230 4.55868 4.66035 4.70880 4.77525 4.80459 4.86518 4.97338 5.03720 5.20057 5.24698 5.39204 5.41833 5.70396 5.84405 5.91972 6.10751 6.14080 6.30407 6.38795 6.93154 7.08425 7.16853 8.60089 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027116 B = 0.002005 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.335057 B =13962.312756 C =14295.872529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.135 3.865 3 H 0.064 0.936 4 C 0.092 3.908 5 H 0.084 0.916 6 N -0.675 5.675 7 C 0.151 3.849 8 C 0.192 3.808 9 N -0.530 5.530 10 C -0.061 4.061 11 C -0.050 4.050 12 N -0.449 5.449 13 C 0.067 3.933 14 C -0.109 4.109 15 C 0.087 3.913 16 N -0.610 5.610 17 C 0.547 3.453 18 O -0.561 6.561 19 C -0.101 4.101 20 S -0.178 6.178 21 C -0.527 4.527 22 H 0.064 0.936 23 C 0.047 3.953 24 N -0.915 5.915 25 Si 0.913 3.087 26 H -0.263 1.263 27 H -0.258 1.258 28 H -0.239 1.239 29 H 0.081 0.919 30 H 0.039 0.961 31 H 0.064 0.936 32 H 0.345 0.655 33 H 0.064 0.936 34 H 0.112 0.888 35 H 0.178 0.822 36 H 0.204 0.796 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.115 0.885 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.761 0.658 33.024 33.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.032 3.968 3 H 0.082 0.918 4 C -0.018 4.018 5 H 0.102 0.898 6 N -0.308 5.308 7 C 0.021 3.979 8 C -0.070 4.070 9 N -0.250 5.250 10 C -0.209 4.209 11 C -0.184 4.184 12 N -0.131 5.131 13 C -0.074 4.074 14 C -0.148 4.148 15 C -0.035 4.035 16 N -0.344 5.344 17 C 0.335 3.665 18 O -0.440 6.440 19 C -0.252 4.252 20 S 0.049 5.951 21 C -0.674 4.674 22 H 0.082 0.918 23 C -0.159 4.159 24 N -0.553 5.553 25 Si 0.735 3.265 26 H -0.187 1.187 27 H -0.182 1.182 28 H -0.163 1.163 29 H 0.099 0.901 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.164 0.836 33 H 0.082 0.918 34 H 0.130 0.870 35 H 0.196 0.804 36 H 0.221 0.779 37 H 0.099 0.901 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.101 0.899 41 H 0.134 0.866 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.128 0.872 45 H 0.129 0.871 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.793 1.886 32.157 32.435 hybrid contribution 0.415 -0.523 -0.352 0.755 sum 4.208 1.362 31.805 32.112 Atomic orbital electron populations 1.22116 0.94768 1.02557 1.02352 1.21632 0.94273 0.96336 0.84608 0.91810 1.22531 0.97077 0.93205 0.88998 0.89835 1.60559 1.57617 1.09531 1.03076 1.20234 1.01937 0.92153 0.83577 1.23300 0.80576 1.02076 1.01092 1.70161 1.34800 1.09785 1.10263 1.22650 0.90994 1.03908 1.03319 1.23232 1.00690 0.96664 0.97845 1.45478 1.08296 1.29713 1.29583 1.22315 0.84231 0.99549 1.01306 1.22855 0.97340 1.01447 0.93130 1.22728 0.95753 0.88070 0.96989 1.48395 1.52946 1.29570 1.03533 1.19654 0.79732 0.84389 0.82747 1.90679 1.40964 1.28801 1.83530 1.23197 1.04998 1.02821 0.94138 1.84751 1.71006 1.40453 0.98881 1.22429 1.37571 1.13650 0.93794 0.91803 1.25531 0.95488 0.98620 0.96259 1.70008 1.43557 1.37512 1.04196 0.85890 0.80947 0.79818 0.79856 1.18740 1.18240 1.16273 0.90057 0.94202 0.91681 0.83573 0.91762 0.86973 0.80441 0.77901 0.90063 0.87780 0.87986 0.89878 0.86627 0.89727 0.89404 0.87190 0.87116 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.59 9.10 71.98 0.65 -2.93 16 2 C 0.14 2.92 2.98 45.34 0.14 3.05 16 3 H 0.06 1.64 7.97 -2.39 -0.02 1.62 16 4 C 0.09 1.18 2.76 46.10 0.13 1.31 16 5 H 0.08 0.87 7.61 -2.39 -0.02 0.85 16 6 N -0.68 -8.87 6.29 -489.46 -3.08 -11.94 16 7 C 0.15 1.66 5.85 85.56 0.50 2.17 16 8 C 0.19 3.14 7.41 138.13 1.02 4.16 16 9 N -0.53 -11.45 11.25 -188.14 -2.12 -13.57 16 10 C -0.06 -1.06 11.87 83.52 0.99 -0.07 16 11 C -0.05 -0.63 11.58 83.09 0.96 0.34 16 12 N -0.45 -5.52 3.15 -537.62 -1.69 -7.21 16 13 C 0.07 0.30 10.97 127.77 1.40 1.70 16 14 C -0.11 -1.14 6.71 31.99 0.21 -0.93 16 15 C 0.09 1.42 6.69 86.86 0.58 2.00 16 16 N -0.61 -15.62 3.06 -788.05 -2.41 -18.04 16 17 C 0.55 19.83 7.66 87.66 0.67 20.50 16 18 O -0.56 -25.01 14.91 -3.05 -0.05 -25.06 16 19 C -0.10 -3.90 5.16 71.23 0.37 -3.53 16 20 S -0.18 -9.11 18.55 -56.49 -1.05 -10.16 16 21 C -0.53 -30.74 10.04 67.95 0.68 -30.06 16 22 H 0.06 3.90 8.03 -2.91 -0.02 3.88 16 23 C 0.05 2.74 5.50 84.86 0.47 3.21 16 24 N -0.91 -55.58 13.97 21.65 0.30 -55.27 16 25 Si 0.91 45.34 27.74 68.60 1.90 47.24 16 26 H -0.26 -12.75 7.11 99.48 0.71 -12.04 16 27 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 28 H -0.24 -11.92 6.74 99.48 0.67 -11.25 16 29 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.04 1.20 6.91 -2.39 -0.02 1.18 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.35 5.65 8.44 -89.69 -0.76 4.90 16 33 H 0.06 0.73 8.09 -2.39 -0.02 0.71 16 34 H 0.11 0.65 7.05 -2.38 -0.02 0.64 16 35 H 0.18 2.40 8.06 -2.91 -0.02 2.37 16 36 H 0.20 1.06 8.06 -2.90 -0.02 1.04 16 37 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 39 H 0.10 0.16 7.04 -2.39 -0.02 0.14 16 40 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.08 1.39 7.47 -2.39 -0.02 1.38 16 43 H 0.09 1.19 8.14 -2.39 -0.02 1.18 16 44 H 0.11 3.92 7.85 -2.39 -0.02 3.91 16 45 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 46 H 0.28 15.56 8.31 -92.70 -0.77 14.79 16 Total: -1.00 -81.27 390.19 0.78 -80.50 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 0.19 Total: 12.60 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 8.78 Total: 0.91 kcal Atomic # 7 Polarization: -97.03 SS G_CDS: -9.00 Total: -106.03 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.05 Total: -25.06 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.90 Total: 47.24 kcal Atomic # 16 Polarization: -9.11 SS G_CDS: -1.05 Total: -10.16 kcal Total: -81.27 0.78 -80.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755666011.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.704 kcal (2) G-P(sol) polarization free energy of solvation -81.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds