Wall clock time and date at job start Tue Mar 31 2020 21:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 S 1.81002 * 109.47326 * 120.00187 * 2 1 3 5 5 C 1.76193 * 99.99889 * 295.00017 * 4 2 1 6 6 N 1.31481 * 126.59214 * 359.68478 * 5 4 2 7 7 N 1.28698 * 109.88902 * 179.56808 * 6 5 4 8 8 C 1.30015 * 109.94363 * 0.22790 * 7 6 5 9 9 N 1.36095 * 126.58621 * 179.97438 * 5 4 2 10 10 C 1.46269 * 127.49507 * 1.09715 * 9 5 4 11 11 C 1.53147 * 109.30911 * 207.52845 * 10 9 5 12 12 C 1.52760 * 109.72546 * 270.80557 * 11 10 9 13 13 C 1.52532 * 110.66778 * 61.58131 * 12 11 10 14 14 C 1.50692 * 127.31420 * 180.77636 * 8 7 6 15 15 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 16 16 O 1.21282 * 119.99717 * 264.99901 * 15 2 1 17 17 N 1.34777 * 120.00195 * 84.99566 * 15 2 1 18 18 C 1.46496 * 119.99703 * 0.02562 * 17 15 2 19 19 C 1.46496 * 120.00037 * 179.97438 * 17 15 2 20 20 C 1.50708 * 109.46701 * 90.00072 * 19 17 15 21 21 H 1.07995 * 120.00122 * 0.02562 * 20 19 17 22 22 C 1.37877 * 119.99432 * 180.02562 * 20 19 17 23 23 N 1.31516 * 119.99755 * 180.02562 * 22 20 19 24 24 Si 1.86793 * 120.00467 * 0.02562 * 22 20 19 25 25 H 1.48507 * 109.47281 * 90.00136 * 24 22 20 26 26 H 1.48497 * 109.47520 * 210.00151 * 24 22 20 27 27 H 1.48503 * 109.47311 * 330.00339 * 24 22 20 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 1.09004 * 109.49071 * 327.47628 * 10 9 5 32 32 H 1.08999 * 109.49921 * 87.54021 * 10 9 5 33 33 H 1.09007 * 109.42601 * 30.87642 * 11 10 9 34 34 H 1.08998 * 109.43164 * 150.72134 * 11 10 9 35 35 H 1.09005 * 109.23353 * 181.88210 * 12 11 10 36 36 H 1.08996 * 109.23785 * 301.27304 * 12 11 10 37 37 H 1.09000 * 109.44009 * 153.56874 * 13 12 11 38 38 H 1.09001 * 109.43436 * 273.45310 * 13 12 11 39 39 H 1.09001 * 109.55129 * 106.59541 * 14 8 7 40 40 H 1.09004 * 109.62861 * 346.35551 * 14 8 7 41 41 H 1.08998 * 109.47172 * 90.00108 * 18 17 15 42 42 H 1.09001 * 109.46776 * 209.99482 * 18 17 15 43 43 H 1.09001 * 109.47605 * 329.99715 * 18 17 15 44 44 H 1.09000 * 109.47026 * 210.00008 * 19 17 15 45 45 H 1.09003 * 109.47133 * 330.00778 * 19 17 15 46 46 H 0.96998 * 120.00360 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 16 2.1334 -0.8533 1.4778 5 6 1.5440 0.2421 2.7257 6 7 0.8672 1.3535 2.5371 7 7 0.5923 1.8965 3.6710 8 6 1.0763 1.1741 4.6376 9 7 1.7066 0.1033 4.0697 10 6 2.4182 -0.9623 4.7751 11 6 1.8149 -1.1357 6.1720 12 6 2.5277 -0.2137 7.1596 13 6 2.3452 1.2471 6.7603 14 6 0.9684 1.4377 6.1174 15 6 2.0324 -0.7103 -1.2306 16 8 2.3208 -1.8871 -1.1761 17 7 2.1610 -0.0379 -2.3915 18 6 1.8130 1.3836 -2.4570 19 6 2.6499 -0.7283 -3.5875 20 6 1.4832 -1.3088 -4.3446 21 1 0.4781 -1.1762 -3.9723 22 6 1.6990 -2.0090 -5.5125 23 7 0.6809 -2.5151 -6.1735 24 14 3.4375 -2.2388 -6.1562 25 1 4.0126 -3.4871 -5.5937 26 1 3.4086 -2.3309 -7.6380 27 1 4.2734 -1.0812 -5.7484 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 2.3214 -1.8946 4.2186 32 1 3.4723 -0.6992 4.8635 33 1 0.7545 -0.8849 6.1425 34 1 1.9331 -2.1709 6.4921 35 1 2.1150 -0.3678 8.1567 36 1 3.5911 -0.4528 7.1707 37 1 2.4224 1.8776 7.6461 38 1 3.1203 1.5277 6.0472 39 1 0.2594 0.7390 6.5615 40 1 0.6264 2.4593 6.2833 41 1 2.6921 1.9840 -2.2228 42 1 1.4643 1.6263 -3.4608 43 1 1.0239 1.5982 -1.7364 44 1 3.1803 -0.0204 -4.2244 45 1 3.3270 -1.5302 -3.2930 46 1 0.8327 -3.0080 -6.9950 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052425949.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:12 Heat of formation + Delta-G solvation = 47.078203 kcal Electronic energy + Delta-G solvation = -27184.759005 eV Core-core repulsion = 23430.362217 eV Total energy + Delta-G solvation = -3754.396788 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.19795 -39.30526 -38.17245 -35.06073 -34.49653 -33.34824 -32.34649 -31.91411 -30.08126 -28.44294 -26.73866 -26.12292 -25.21437 -24.37131 -22.91997 -22.16320 -20.90843 -20.52354 -18.96543 -17.85045 -16.99760 -16.95476 -16.70518 -16.23342 -15.76936 -15.56850 -15.24448 -14.79575 -14.73347 -14.14034 -14.00937 -13.82832 -13.37948 -13.31084 -13.05690 -12.60190 -12.51270 -12.37731 -12.21102 -12.07650 -11.91809 -11.88063 -11.71907 -11.50371 -11.46075 -11.37185 -11.15843 -10.94175 -10.68416 -10.54758 -10.41935 -10.17645 -10.15267 -9.87022 -9.57075 -9.18164 -8.60466 -7.81896 -7.66342 -6.10019 -4.09381 0.95350 1.49212 1.94225 2.40432 2.65259 3.14885 3.28394 3.34294 3.36021 3.74376 3.88237 3.98963 4.06659 4.22155 4.38184 4.53136 4.61914 4.64295 4.77728 4.85178 4.99759 5.02811 5.13384 5.15131 5.19941 5.24016 5.25869 5.38989 5.44172 5.56514 5.56884 5.64051 5.68599 5.81589 5.82759 5.86430 5.97154 6.15686 6.37779 6.54189 6.62318 6.87492 7.21771 7.57169 8.07753 8.42843 8.51150 8.75289 8.93645 9.49389 11.03219 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028206 B = 0.002470 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.441873 B =11331.529405 C =11748.901804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.101 4.101 3 H 0.119 0.881 4 S 0.063 5.937 5 C 0.151 3.849 6 N -0.294 5.294 7 N -0.285 5.285 8 C 0.180 3.820 9 N -0.458 5.458 10 C 0.103 3.897 11 C -0.139 4.139 12 C -0.124 4.124 13 C -0.124 4.124 14 C -0.033 4.033 15 C 0.529 3.471 16 O -0.527 6.527 17 N -0.586 5.586 18 C 0.075 3.925 19 C 0.216 3.784 20 C -0.530 4.530 21 H 0.076 0.924 22 C 0.073 3.927 23 N -0.896 5.896 24 Si 0.876 3.124 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.266 1.266 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.049 0.951 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.034 0.966 45 H 0.038 0.962 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.057 7.362 28.294 29.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.234 4.234 3 H 0.137 0.863 4 S 0.291 5.709 5 C -0.224 4.224 6 N -0.138 5.138 7 N -0.124 5.124 8 C -0.089 4.089 9 N -0.152 5.152 10 C -0.020 4.020 11 C -0.177 4.177 12 C -0.162 4.162 13 C -0.163 4.163 14 C -0.073 4.073 15 C 0.312 3.688 16 O -0.405 6.405 17 N -0.317 5.317 18 C -0.069 4.069 19 C 0.095 3.905 20 C -0.569 4.569 21 H 0.094 0.906 22 C -0.130 4.130 23 N -0.534 5.534 24 Si 0.703 3.297 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.190 1.190 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.118 0.882 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.110 0.890 40 H 0.119 0.881 41 H 0.068 0.932 42 H 0.099 0.901 43 H 0.085 0.915 44 H 0.052 0.948 45 H 0.056 0.944 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.093 6.743 27.489 28.598 hybrid contribution 0.736 0.019 -0.079 0.740 sum 4.829 6.761 27.410 28.642 Atomic orbital electron populations 1.22022 0.89832 1.04001 1.04298 1.23626 1.02362 1.03713 0.93706 0.86288 1.86010 1.67595 1.24949 0.92364 1.27128 1.05302 1.01989 0.87939 1.74779 1.15977 1.05154 1.17924 1.73883 1.20097 1.23999 0.94454 1.24870 0.98684 0.87073 0.98306 1.46317 1.42395 1.21485 1.05036 1.22081 0.96664 0.89495 0.93757 1.22012 1.01426 1.01623 0.92615 1.21594 1.01206 0.94235 0.99144 1.21612 0.96347 0.97052 1.01246 1.20188 0.98718 1.04340 0.84023 1.19357 0.79056 0.86903 0.83476 1.90710 1.50173 1.15058 1.84512 1.47719 1.63821 1.10179 1.10000 1.21836 0.99762 0.81444 1.03876 1.19747 0.96100 0.92936 0.81673 1.21303 0.93998 1.34487 1.07078 0.90625 1.24853 0.96954 0.94798 0.96369 1.69893 1.30385 1.36062 1.17062 0.86855 0.85212 0.79435 0.78217 1.19874 1.21023 1.19038 0.89831 0.91069 0.90569 0.88221 0.89022 0.89993 0.89137 0.90832 0.91138 0.90118 0.91573 0.88990 0.88141 0.93248 0.90057 0.91537 0.94835 0.94380 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.78 37.16 0.33 -1.90 16 2 C -0.10 -1.65 1.85 -27.88 -0.05 -1.70 16 3 H 0.12 1.77 6.92 -51.92 -0.36 1.42 16 4 S 0.06 0.94 20.64 -107.50 -2.22 -1.28 16 5 C 0.15 2.13 7.75 -88.58 -0.69 1.44 16 6 N -0.29 -4.64 9.78 30.62 0.30 -4.34 16 7 N -0.28 -4.23 12.18 32.92 0.40 -3.83 16 8 C 0.18 2.03 6.95 -154.37 -1.07 0.95 16 9 N -0.46 -5.09 3.11 -113.81 -0.35 -5.45 16 10 C 0.10 0.75 6.31 -4.09 -0.03 0.72 16 11 C -0.14 -0.66 5.55 -26.78 -0.15 -0.80 16 12 C -0.12 -0.45 5.65 -27.09 -0.15 -0.60 16 13 C -0.12 -0.60 5.68 -26.90 -0.15 -0.75 16 14 C -0.03 -0.22 5.56 -27.81 -0.15 -0.37 16 15 C 0.53 10.89 6.79 -10.98 -0.07 10.81 16 16 O -0.53 -12.84 15.72 5.56 0.09 -12.75 16 17 N -0.59 -12.14 2.86 -182.95 -0.52 -12.67 16 18 C 0.07 1.18 9.87 59.84 0.59 1.77 16 19 C 0.22 5.26 4.23 -5.19 -0.02 5.24 16 20 C -0.53 -15.17 9.94 -34.44 -0.34 -15.51 16 21 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 22 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 23 N -0.90 -27.58 13.96 55.43 0.77 -26.80 16 24 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 25 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 27 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 28 H 0.08 1.27 5.92 -51.93 -0.31 0.97 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.08 1.16 6.84 -51.93 -0.36 0.80 16 31 H 0.10 0.73 7.95 -51.93 -0.41 0.32 16 32 H 0.09 0.57 7.83 -51.93 -0.41 0.17 16 33 H 0.08 0.46 5.71 -51.92 -0.30 0.16 16 34 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 36 H 0.07 0.23 8.09 -51.93 -0.42 -0.19 16 37 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.07 0.43 7.84 -51.93 -0.41 0.02 16 39 H 0.09 0.48 6.35 -51.93 -0.33 0.15 16 40 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 43 H 0.07 0.92 5.17 -51.93 -0.27 0.65 16 44 H 0.03 0.77 7.13 -51.93 -0.37 0.40 16 45 H 0.04 0.98 6.85 -51.93 -0.36 0.63 16 46 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 372.73 15.07 5.62 5.62 Total: -1.00 -36.17 372.73 -9.49 -45.66 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -6.83 Total: -2.28 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -2.07 Total: 1.32 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 0.60 Total: -53.08 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.09 Total: -12.75 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.22 Total: -1.28 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.17 -9.49 -45.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052425949.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.738 kcal (2) G-P(sol) polarization free energy of solvation -36.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds