Wall clock time and date at job start Tue Mar 31 2020 21:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47018 * 2 1 4 4 C 1.50701 * 109.47315 * 120.00132 * 2 1 3 5 5 O 1.21280 * 119.99936 * 103.68127 * 4 2 1 6 6 N 1.34778 * 119.99736 * 283.67770 * 4 2 1 7 7 C 1.46502 * 120.00212 * 359.97438 * 6 4 2 8 8 C 1.46501 * 119.99739 * 180.02562 * 6 4 2 9 9 C 1.50693 * 109.47452 * 89.99825 * 8 6 4 10 10 H 1.08001 * 120.00065 * 0.02562 * 9 8 6 11 11 C 1.37877 * 120.00445 * 179.97438 * 9 8 6 12 12 N 1.31506 * 120.00431 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 119.99538 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47399 * 89.99578 * 13 11 9 15 15 H 1.48503 * 109.46983 * 209.99427 * 13 11 9 16 16 H 1.48493 * 109.47237 * 329.99353 * 13 11 9 17 17 N 1.46897 * 109.47027 * 240.00403 * 2 1 3 18 18 C 1.46955 * 111.00071 * 312.28823 * 17 2 1 19 19 C 1.53051 * 109.36442 * 183.18940 * 18 17 2 20 20 N 1.46955 * 109.36519 * 301.59825 * 19 18 17 21 21 C 1.38613 * 110.99822 * 183.18743 * 20 19 18 22 22 N 1.29688 * 124.94825 * 235.89783 * 21 20 19 23 23 C 1.32121 * 116.86056 * 179.81590 * 22 21 20 24 24 C 1.33329 * 114.58278 * 0.47468 * 23 22 21 25 25 S 1.70969 * 124.94733 * 56.20609 * 21 20 19 26 26 C 1.46961 * 110.87623 * 59.32454 * 20 19 18 27 27 C 1.46959 * 111.00221 * 76.09183 * 17 2 1 28 28 H 1.09002 * 109.46888 * 299.99818 * 1 2 3 29 29 H 1.08997 * 109.47670 * 59.99953 * 1 2 3 30 30 H 1.09002 * 109.47018 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46550 * 90.00416 * 7 6 4 32 32 H 1.08998 * 109.46833 * 209.99891 * 7 6 4 33 33 H 1.08993 * 109.47393 * 330.00210 * 7 6 4 34 34 H 1.09005 * 109.46761 * 209.99993 * 8 6 4 35 35 H 1.09008 * 109.47162 * 329.99651 * 8 6 4 36 36 H 0.97007 * 120.00465 * 180.02562 * 12 11 9 37 37 H 1.09005 * 109.49090 * 303.16179 * 18 17 2 38 38 H 1.09003 * 109.48555 * 63.22420 * 18 17 2 39 39 H 1.09001 * 109.48999 * 61.57070 * 19 18 17 40 40 H 1.09004 * 109.48353 * 181.63165 * 19 18 17 41 41 H 1.08000 * 122.70605 * 180.22295 * 23 22 21 42 42 H 1.07994 * 125.95067 * 179.75063 * 24 23 22 43 43 H 1.09002 * 109.48430 * 180.71140 * 26 20 19 44 44 H 1.08997 * 109.50826 * 60.65654 * 26 20 19 45 45 H 1.08999 * 109.48855 * 296.77439 * 27 17 2 46 46 H 1.09000 * 109.48821 * 56.81862 * 27 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.4687 -1.8387 1.1435 6 7 1.9968 -0.0919 2.4274 7 6 1.4703 1.2712 2.5322 8 6 2.4857 -0.7823 3.6234 9 6 3.9546 -0.4976 3.8028 10 1 4.4722 0.1348 3.0967 11 6 4.6376 -1.0435 4.8688 12 7 5.9196 -0.7954 5.0250 13 14 3.7422 -2.1368 6.0905 14 1 3.8177 -3.5494 5.6387 15 1 4.3776 -2.0098 7.4267 16 1 2.3195 -1.7203 6.1774 17 7 2.0196 -0.6924 -1.1995 18 6 1.3248 -1.9734 -1.3886 19 6 1.9173 -2.6982 -2.5994 20 7 1.7819 -1.8481 -3.7905 21 6 2.2440 -2.5015 -4.9222 22 7 3.1620 -2.0488 -5.7186 23 6 3.4835 -2.8075 -6.7514 24 6 2.7988 -3.9484 -6.8359 25 16 1.6813 -4.0180 -5.4759 26 6 2.4768 -0.5670 -3.6013 27 6 1.8843 0.1577 -2.3905 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.3981 1.2326 2.7249 32 1 1.9680 1.7909 3.3508 33 1 1.6529 1.8040 1.5991 34 1 1.9377 -0.4284 4.4967 35 1 2.3349 -1.8560 3.5104 36 1 6.4002 -1.1798 5.7748 37 1 1.4502 -2.5900 -0.4985 38 1 0.2638 -1.7901 -1.5579 39 1 2.9720 -2.9058 -2.4188 40 1 1.3840 -3.6354 -2.7590 41 1 4.2371 -2.5244 -7.4713 42 1 2.9098 -4.6990 -7.6044 43 1 2.3514 0.0495 -4.4914 44 1 3.5379 -0.7500 -3.4322 45 1 0.8296 0.3653 -2.5712 46 1 2.4172 1.0951 -2.2307 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054635422.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:34 Heat of formation + Delta-G solvation = 53.774077 kcal Electronic energy + Delta-G solvation = -27656.358838 eV Core-core repulsion = 23902.252405 eV Total energy + Delta-G solvation = -3754.106434 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.63279 -39.70920 -38.34882 -35.89060 -34.88192 -32.60924 -31.40544 -31.17453 -29.41789 -28.30362 -26.82185 -26.02729 -24.57955 -24.03151 -23.57995 -21.75882 -20.48060 -19.40360 -18.74138 -18.28487 -16.94084 -16.75449 -16.46653 -15.95895 -15.45464 -15.10653 -14.98028 -14.97219 -14.73512 -14.43160 -14.02739 -13.89262 -13.64366 -13.36216 -13.31256 -12.68886 -12.41831 -12.27564 -12.22707 -12.01362 -11.88067 -11.74930 -11.65487 -11.44399 -11.22404 -11.13329 -10.95920 -10.81041 -10.51937 -10.24908 -10.13405 -9.84194 -9.51937 -9.48345 -8.96352 -8.57897 -8.35761 -8.16484 -7.68709 -6.07199 -4.05857 0.56773 0.97544 1.56100 2.60511 3.27224 3.29466 3.35249 3.36788 3.39616 3.59846 4.07701 4.30182 4.40217 4.67011 4.81933 4.98844 5.00350 5.05190 5.08109 5.12691 5.16038 5.25626 5.27825 5.31315 5.36418 5.47051 5.64057 5.66348 5.68712 5.75846 5.77357 5.84722 5.91384 6.01620 6.04301 6.18641 6.32986 6.58908 6.67297 6.90282 7.00547 7.07867 7.34572 7.57072 7.62120 8.25395 8.48549 8.95333 9.01568 9.52913 11.06290 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017784 B = 0.002614 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.056657 B =10709.965000 C =11345.023661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.065 3.935 3 H 0.103 0.897 4 C 0.517 3.483 5 O -0.526 6.526 6 N -0.597 5.597 7 C 0.082 3.918 8 C 0.217 3.783 9 C -0.527 4.527 10 H 0.074 0.926 11 C 0.072 3.928 12 N -0.898 5.898 13 Si 0.876 3.124 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.266 1.266 17 N -0.516 5.516 18 C 0.052 3.948 19 C 0.060 3.940 20 N -0.452 5.452 21 C 0.233 3.767 22 N -0.521 5.521 23 C 0.064 3.936 24 C -0.287 4.287 25 S 0.132 5.868 26 C 0.073 3.927 27 C 0.053 3.947 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.029 0.971 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.114 0.886 38 H 0.045 0.955 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.175 0.825 42 H 0.175 0.825 43 H 0.090 0.910 44 H 0.065 0.935 45 H 0.045 0.955 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.249 -0.630 -20.740 24.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.047 4.047 3 H 0.121 0.879 4 C 0.303 3.697 5 O -0.402 6.402 6 N -0.330 5.330 7 C -0.062 4.062 8 C 0.097 3.903 9 C -0.566 4.566 10 H 0.092 0.908 11 C -0.131 4.131 12 N -0.536 5.536 13 Si 0.703 3.297 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.191 1.191 17 N -0.241 5.241 18 C -0.076 4.076 19 C -0.067 4.067 20 N -0.173 5.173 21 C -0.136 4.136 22 N -0.242 5.242 23 C -0.087 4.087 24 C -0.428 4.428 25 S 0.383 5.617 26 C -0.055 4.055 27 C -0.075 4.075 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.132 0.868 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.191 0.809 42 H 0.193 0.807 43 H 0.109 0.891 44 H 0.083 0.917 45 H 0.063 0.937 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.376 -1.459 -20.114 24.200 hybrid contribution 0.298 -0.068 -0.056 0.311 sum -13.079 -1.526 -20.170 24.088 Atomic orbital electron populations 1.22379 0.95391 1.03226 1.02936 1.21668 0.94111 0.98786 0.90148 0.87921 1.20037 0.79072 0.86823 0.83757 1.90599 1.45725 1.19041 1.84879 1.47806 1.61483 1.15053 1.08637 1.21720 0.97760 0.84105 1.02618 1.19646 0.95540 0.93421 0.81730 1.21328 0.92384 1.31552 1.11301 0.90752 1.24862 0.94721 0.95910 0.97561 1.69897 1.08063 1.44887 1.30762 0.86853 0.80202 0.81826 0.80792 1.19932 1.21113 1.19108 1.61977 1.56790 1.03830 1.01468 1.22438 0.95402 0.91570 0.98202 1.22534 1.02192 0.94953 0.86991 1.59325 1.51646 1.05523 1.00807 1.25201 0.94093 0.95996 0.98345 1.66859 1.14786 1.35259 1.07303 1.21549 1.00607 0.90514 0.96063 1.26785 1.04920 1.05218 1.05849 1.83927 1.39216 1.18229 1.20284 1.22154 0.97348 0.87899 0.98146 1.22289 0.99868 0.96331 0.89020 0.91094 0.91772 0.91518 0.93640 0.90537 0.92176 0.95315 0.94613 0.92587 0.86771 0.93709 0.91616 0.89631 0.80851 0.80716 0.89137 0.91655 0.93708 0.89421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 8.19 37.16 0.30 -1.70 16 2 C 0.06 0.92 1.93 -68.87 -0.13 0.79 16 3 H 0.10 1.32 6.27 -51.93 -0.33 1.00 16 4 C 0.52 10.15 6.85 -10.98 -0.08 10.07 16 5 O -0.53 -12.42 13.84 5.56 0.08 -12.35 16 6 N -0.60 -11.93 2.86 -182.95 -0.52 -12.46 16 7 C 0.08 1.20 9.36 59.85 0.56 1.76 16 8 C 0.22 5.24 4.23 -5.20 -0.02 5.22 16 9 C -0.53 -15.13 9.94 -34.44 -0.34 -15.47 16 10 H 0.07 2.36 8.06 -52.49 -0.42 1.94 16 11 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 12 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 13 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 14 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 16 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 17 N -0.52 -7.37 4.42 -227.88 -1.01 -8.37 16 18 C 0.05 0.70 4.43 -3.77 -0.02 0.68 16 19 C 0.06 0.75 5.45 -3.77 -0.02 0.73 16 20 N -0.45 -5.48 4.78 -175.22 -0.84 -6.32 16 21 C 0.23 2.82 6.73 -87.68 -0.59 2.23 16 22 N -0.52 -6.56 9.50 -15.20 -0.14 -6.70 16 23 C 0.06 0.64 11.34 -19.14 -0.22 0.42 16 24 C -0.29 -2.48 11.34 29.02 0.33 -2.15 16 25 S 0.13 1.28 22.33 -107.50 -2.40 -1.12 16 26 C 0.07 0.88 4.94 -3.77 -0.02 0.86 16 27 C 0.05 0.61 5.40 -3.77 -0.02 0.59 16 28 H 0.07 0.73 6.48 -51.93 -0.34 0.40 16 29 H 0.06 0.60 7.02 -51.93 -0.36 0.23 16 30 H 0.07 0.78 6.39 -51.93 -0.33 0.45 16 31 H 0.05 0.54 7.45 -51.93 -0.39 0.16 16 32 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 33 H 0.06 0.73 6.02 -51.93 -0.31 0.42 16 34 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 35 H 0.04 0.92 6.85 -51.92 -0.36 0.56 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.11 1.84 5.88 -51.93 -0.31 1.54 16 38 H 0.04 0.54 6.41 -51.93 -0.33 0.21 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.09 0.92 7.44 -51.93 -0.39 0.54 16 41 H 0.17 1.27 8.06 -52.49 -0.42 0.84 16 42 H 0.18 1.01 8.06 -52.49 -0.42 0.58 16 43 H 0.09 1.03 7.97 -51.93 -0.41 0.61 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.04 0.46 7.02 -51.93 -0.36 0.10 16 46 H 0.09 0.90 8.02 -51.93 -0.42 0.49 16 LS Contribution 368.72 15.07 5.56 5.56 Total: -1.00 -34.87 368.72 -10.24 -45.11 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -6.70 Total: 0.82 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -0.36 Total: 6.03 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -1.74 Total: -60.90 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.08 Total: -12.35 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.40 Total: -1.12 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.87 -10.24 -45.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054635422.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.884 kcal (2) G-P(sol) polarization free energy of solvation -34.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds