Wall clock time and date at job start Tue Mar 31 2020 21:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47018 * 2 1 4 4 C 1.50701 * 109.47315 * 120.00132 * 2 1 3 5 5 O 1.21280 * 119.99936 * 103.68127 * 4 2 1 6 6 N 1.34778 * 119.99736 * 283.67770 * 4 2 1 7 7 C 1.46502 * 120.00212 * 359.97438 * 6 4 2 8 8 C 1.46501 * 119.99739 * 180.02562 * 6 4 2 9 9 C 1.50693 * 109.47452 * 89.99825 * 8 6 4 10 10 H 1.08001 * 120.00065 * 0.02562 * 9 8 6 11 11 C 1.37877 * 120.00445 * 179.97438 * 9 8 6 12 12 N 1.31506 * 120.00431 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 119.99538 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47399 * 89.99578 * 13 11 9 15 15 H 1.48503 * 109.46983 * 209.99427 * 13 11 9 16 16 H 1.48493 * 109.47237 * 329.99353 * 13 11 9 17 17 N 1.46897 * 109.47027 * 240.00403 * 2 1 3 18 18 C 1.46955 * 111.00071 * 312.28823 * 17 2 1 19 19 C 1.53051 * 109.36442 * 183.18940 * 18 17 2 20 20 N 1.46955 * 109.36519 * 301.59825 * 19 18 17 21 21 C 1.38613 * 110.99822 * 183.18743 * 20 19 18 22 22 N 1.29688 * 124.94825 * 235.89783 * 21 20 19 23 23 C 1.32121 * 116.86056 * 179.81590 * 22 21 20 24 24 C 1.33329 * 114.58278 * 0.47468 * 23 22 21 25 25 S 1.70969 * 124.94733 * 56.20609 * 21 20 19 26 26 C 1.46961 * 110.87623 * 59.32454 * 20 19 18 27 27 C 1.46959 * 111.00221 * 76.09183 * 17 2 1 28 28 H 1.09002 * 109.46888 * 299.99818 * 1 2 3 29 29 H 1.08997 * 109.47670 * 59.99953 * 1 2 3 30 30 H 1.09002 * 109.47018 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46550 * 90.00416 * 7 6 4 32 32 H 1.08998 * 109.46833 * 209.99891 * 7 6 4 33 33 H 1.08993 * 109.47393 * 330.00210 * 7 6 4 34 34 H 1.09005 * 109.46761 * 209.99993 * 8 6 4 35 35 H 1.09008 * 109.47162 * 329.99651 * 8 6 4 36 36 H 0.97007 * 120.00465 * 180.02562 * 12 11 9 37 37 H 1.09005 * 109.49090 * 303.16179 * 18 17 2 38 38 H 1.09003 * 109.48555 * 63.22420 * 18 17 2 39 39 H 1.09001 * 109.48999 * 61.57070 * 19 18 17 40 40 H 1.09004 * 109.48353 * 181.63165 * 19 18 17 41 41 H 1.08000 * 122.70605 * 180.22295 * 23 22 21 42 42 H 1.07994 * 125.95067 * 179.75063 * 24 23 22 43 43 H 1.09002 * 109.48430 * 180.71140 * 26 20 19 44 44 H 1.08997 * 109.50826 * 60.65654 * 26 20 19 45 45 H 1.08999 * 109.48855 * 296.77439 * 27 17 2 46 46 H 1.09000 * 109.48821 * 56.81862 * 27 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.4687 -1.8387 1.1435 6 7 1.9968 -0.0919 2.4274 7 6 1.4703 1.2712 2.5322 8 6 2.4857 -0.7823 3.6234 9 6 3.9546 -0.4976 3.8028 10 1 4.4722 0.1348 3.0967 11 6 4.6376 -1.0435 4.8688 12 7 5.9196 -0.7954 5.0250 13 14 3.7422 -2.1368 6.0905 14 1 3.8177 -3.5494 5.6387 15 1 4.3776 -2.0098 7.4267 16 1 2.3195 -1.7203 6.1774 17 7 2.0196 -0.6924 -1.1995 18 6 1.3248 -1.9734 -1.3886 19 6 1.9173 -2.6982 -2.5994 20 7 1.7819 -1.8481 -3.7905 21 6 2.2440 -2.5015 -4.9222 22 7 3.1620 -2.0488 -5.7186 23 6 3.4835 -2.8075 -6.7514 24 6 2.7988 -3.9484 -6.8359 25 16 1.6813 -4.0180 -5.4759 26 6 2.4768 -0.5670 -3.6013 27 6 1.8843 0.1577 -2.3905 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.3981 1.2326 2.7249 32 1 1.9680 1.7909 3.3508 33 1 1.6529 1.8040 1.5991 34 1 1.9377 -0.4284 4.4967 35 1 2.3349 -1.8560 3.5104 36 1 6.4002 -1.1798 5.7748 37 1 1.4502 -2.5900 -0.4985 38 1 0.2638 -1.7901 -1.5579 39 1 2.9720 -2.9058 -2.4188 40 1 1.3840 -3.6354 -2.7590 41 1 4.2371 -2.5244 -7.4713 42 1 2.9098 -4.6990 -7.6044 43 1 2.3514 0.0495 -4.4914 44 1 3.5379 -0.7500 -3.4322 45 1 0.8296 0.3653 -2.5712 46 1 2.4172 1.0951 -2.2307 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054635422.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:33 Heat of formation + Delta-G solvation = 27.332226 kcal Electronic energy + Delta-G solvation = -27657.505443 eV Core-core repulsion = 23902.252405 eV Total energy + Delta-G solvation = -3755.253038 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.64994 -40.85087 -39.47896 -36.99860 -36.47704 -34.70715 -32.51883 -32.16798 -30.55525 -29.84010 -27.77190 -27.36678 -25.78443 -24.99537 -24.82175 -23.29812 -21.43908 -20.35919 -19.90149 -19.36612 -19.12317 -17.99564 -17.55406 -17.18470 -16.52214 -16.39561 -16.26434 -15.94712 -15.86729 -15.60299 -15.43123 -15.03118 -14.71675 -14.65328 -14.41522 -14.12371 -13.82807 -13.63235 -13.36629 -13.26433 -13.14155 -12.95582 -12.83689 -12.60300 -12.43925 -12.40709 -12.22322 -12.15136 -11.98992 -11.84372 -11.72629 -11.13005 -10.82528 -10.68284 -10.43056 -10.28153 -9.37790 -9.23295 -9.15248 -8.32985 -6.37908 -0.23356 0.19008 0.80738 1.32782 1.37214 1.45574 1.79715 1.84244 2.25658 2.31691 2.52047 2.91576 3.01596 3.46684 3.63628 3.75667 3.95179 4.04752 4.07370 4.14797 4.20587 4.29726 4.40453 4.44808 4.45591 4.59498 4.63059 4.70050 4.72754 4.76282 4.82963 4.86793 4.88435 4.94472 4.97114 5.01354 5.09772 5.21900 5.37805 5.47512 5.65115 5.69070 5.95360 6.08369 6.26339 6.63912 6.76828 6.77145 7.23276 7.50574 8.84307 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017784 B = 0.002614 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.056657 B =10709.965000 C =11345.023661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.076 3.924 3 H 0.120 0.880 4 C 0.505 3.495 5 O -0.579 6.579 6 N -0.607 5.607 7 C 0.075 3.925 8 C 0.226 3.774 9 C -0.533 4.533 10 H 0.025 0.975 11 C 0.008 3.992 12 N -0.948 5.948 13 Si 0.950 3.050 14 H -0.277 1.277 15 H -0.276 1.276 16 H -0.235 1.235 17 N -0.546 5.546 18 C 0.060 3.940 19 C 0.068 3.932 20 N -0.448 5.448 21 C 0.200 3.800 22 N -0.544 5.544 23 C 0.040 3.960 24 C -0.270 4.270 25 S 0.155 5.845 26 C 0.079 3.921 27 C 0.060 3.940 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.051 0.949 35 H 0.018 0.982 36 H 0.268 0.732 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.035 0.965 40 H 0.101 0.899 41 H 0.196 0.804 42 H 0.208 0.792 43 H 0.098 0.902 44 H 0.036 0.964 45 H 0.066 0.934 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.324 -0.401 -21.851 27.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.035 4.035 3 H 0.138 0.862 4 C 0.293 3.707 5 O -0.458 6.458 6 N -0.339 5.339 7 C -0.067 4.067 8 C 0.103 3.897 9 C -0.572 4.572 10 H 0.043 0.957 11 C -0.190 4.190 12 N -0.588 5.588 13 Si 0.773 3.227 14 H -0.203 1.203 15 H -0.201 1.201 16 H -0.158 1.158 17 N -0.271 5.271 18 C -0.068 4.068 19 C -0.060 4.060 20 N -0.169 5.169 21 C -0.168 4.168 22 N -0.266 5.266 23 C -0.110 4.110 24 C -0.410 4.410 25 S 0.406 5.594 26 C -0.050 4.050 27 C -0.067 4.067 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.068 0.932 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.053 0.947 40 H 0.119 0.881 41 H 0.213 0.787 42 H 0.225 0.775 43 H 0.116 0.884 44 H 0.055 0.945 45 H 0.084 0.916 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.488 -1.176 -21.256 26.927 hybrid contribution 1.374 -0.159 0.131 1.390 sum -15.113 -1.335 -21.125 26.008 Atomic orbital electron populations 1.22332 0.92335 1.03327 1.04944 1.21599 0.96259 0.98276 0.87366 0.86206 1.21142 0.77990 0.86504 0.85044 1.90575 1.47937 1.21527 1.85780 1.47927 1.61362 1.16938 1.07687 1.22035 0.99544 0.81296 1.03792 1.19296 0.92814 0.93085 0.84502 1.21575 0.94901 1.30553 1.10172 0.95675 1.25893 0.95532 0.97547 0.99999 1.70061 1.10147 1.46635 1.31997 0.85684 0.80433 0.78839 0.77775 1.20305 1.20124 1.15823 1.61867 1.57979 1.04669 1.02564 1.22255 0.96460 0.91052 0.97037 1.22410 1.00408 0.95781 0.87370 1.59391 1.51677 1.05317 1.00508 1.25372 0.95249 0.97527 0.98661 1.66840 1.15093 1.36598 1.08089 1.21952 1.01785 0.91005 0.96260 1.27231 1.03179 1.05106 1.05505 1.83811 1.38884 1.16389 1.20308 1.22069 0.95794 0.88342 0.98805 1.22311 1.01191 0.95948 0.87280 0.89745 0.88998 0.92393 0.89895 0.91746 0.89418 0.93153 0.96385 0.92345 0.89951 0.91705 0.94690 0.88118 0.78707 0.77522 0.88409 0.94541 0.91590 0.88266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.23 8.19 71.98 0.59 -2.64 16 2 C 0.08 2.06 1.93 44.17 0.09 2.14 16 3 H 0.12 2.78 6.27 -2.39 -0.01 2.77 16 4 C 0.50 19.94 6.85 87.66 0.60 20.54 16 5 O -0.58 -28.54 13.84 -3.03 -0.04 -28.58 16 6 N -0.61 -24.01 2.86 -851.13 -2.43 -26.44 16 7 C 0.08 2.03 9.36 127.77 1.20 3.23 16 8 C 0.23 10.92 4.23 85.63 0.36 11.28 16 9 C -0.53 -31.74 9.94 25.60 0.25 -31.48 16 10 H 0.02 1.68 8.06 -2.91 -0.02 1.66 16 11 C 0.01 0.47 5.47 84.66 0.46 0.93 16 12 N -0.95 -60.93 13.96 21.45 0.30 -60.63 16 13 Si 0.95 44.75 27.47 68.60 1.88 46.63 16 14 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 15 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 16 H -0.24 -9.82 6.54 99.48 0.65 -9.16 16 17 N -0.55 -15.35 4.42 -874.87 -3.87 -19.22 16 18 C 0.06 1.62 4.43 86.31 0.38 2.00 16 19 C 0.07 1.73 5.45 86.31 0.47 2.20 16 20 N -0.45 -10.73 4.78 -708.26 -3.38 -14.11 16 21 C 0.20 4.77 6.73 179.32 1.21 5.98 16 22 N -0.54 -13.53 9.50 -202.02 -1.92 -15.45 16 23 C 0.04 0.75 11.34 83.54 0.95 1.70 16 24 C -0.27 -4.06 11.34 66.71 0.76 -3.30 16 25 S 0.16 2.78 22.33 -56.49 -1.26 1.52 16 26 C 0.08 1.88 4.94 86.31 0.43 2.31 16 27 C 0.06 1.27 5.40 86.31 0.47 1.74 16 28 H 0.08 1.38 6.48 -2.39 -0.02 1.37 16 29 H 0.09 1.28 7.02 -2.39 -0.02 1.26 16 30 H 0.06 1.22 6.39 -2.39 -0.02 1.21 16 31 H 0.08 1.65 7.45 -2.39 -0.02 1.63 16 32 H 0.06 1.90 8.07 -2.39 -0.02 1.88 16 33 H 0.09 1.86 6.02 -2.39 -0.01 1.85 16 34 H 0.05 2.22 7.13 -2.38 -0.02 2.20 16 35 H 0.02 0.94 6.85 -2.38 -0.02 0.92 16 36 H 0.27 15.97 8.31 -92.70 -0.77 15.20 16 37 H 0.08 2.79 5.88 -2.38 -0.01 2.78 16 38 H 0.06 1.47 6.41 -2.39 -0.02 1.45 16 39 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.10 2.19 7.44 -2.38 -0.02 2.17 16 41 H 0.20 2.54 8.06 -2.91 -0.02 2.51 16 42 H 0.21 1.64 8.06 -2.91 -0.02 1.62 16 43 H 0.10 2.16 7.97 -2.39 -0.02 2.14 16 44 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.07 1.14 7.02 -2.39 -0.02 1.12 16 46 H 0.10 1.85 8.02 -2.39 -0.02 1.83 16 Total: -1.00 -81.79 368.72 -1.58 -83.36 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.94 Total: 16.28 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: 8.21 Total: 16.64 kcal Atomic # 7 Polarization: -124.55 SS G_CDS: -11.30 Total: -135.85 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -0.04 Total: -28.58 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.63 kcal Atomic # 16 Polarization: 2.78 SS G_CDS: -1.26 Total: 1.52 kcal Total: -81.79 -1.58 -83.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054635422.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.695 kcal (2) G-P(sol) polarization free energy of solvation -81.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds