Wall clock time and date at job start Tue Mar 31 2020 21:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.46754 * 2 1 4 4 S 1.81400 * 109.47155 * 119.99497 * 2 1 3 5 5 C 1.81394 * 103.00249 * 295.00018 * 4 2 1 6 6 C 1.53005 * 109.47197 * 179.97438 * 5 4 2 7 7 C 1.52992 * 109.47277 * 180.02562 * 6 5 4 8 8 N 1.46499 * 109.47267 * 180.02562 * 7 6 5 9 9 C 1.38405 * 119.99936 * 180.02562 * 8 7 6 10 10 N 1.32494 * 119.22088 * 359.73198 * 9 8 7 11 11 C 1.32272 * 120.74414 * 179.75955 * 10 9 8 12 12 C 1.38606 * 119.19379 * 0.50690 * 11 10 9 13 13 C 1.38603 * 118.56259 * 359.74450 * 12 11 10 14 14 N 1.32283 * 119.19111 * 0.02562 * 13 12 11 15 15 C 1.50699 * 109.47311 * 239.99893 * 2 1 3 16 16 O 1.21280 * 120.00012 * 264.99897 * 15 2 1 17 17 N 1.34774 * 119.99879 * 84.99876 * 15 2 1 18 18 C 1.46497 * 120.00291 * 0.02562 * 17 15 2 19 19 C 1.46507 * 119.99597 * 180.02562 * 17 15 2 20 20 C 1.50693 * 109.47091 * 90.00071 * 19 17 15 21 21 H 1.07999 * 120.00225 * 359.97438 * 20 19 17 22 22 C 1.37882 * 120.00062 * 179.97438 * 20 19 17 23 23 N 1.31514 * 119.99753 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00311 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47075 * 60.00077 * 24 22 20 26 26 H 1.48492 * 109.47209 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.46944 * 300.00204 * 24 22 20 28 28 H 1.09001 * 109.46945 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47418 * 300.00025 * 1 2 3 30 30 H 1.08997 * 109.47262 * 60.00384 * 1 2 3 31 31 H 1.08997 * 109.46788 * 60.00283 * 5 4 2 32 32 H 1.08992 * 109.47374 * 299.99867 * 5 4 2 33 33 H 1.09004 * 109.46840 * 59.99903 * 6 5 4 34 34 H 1.09005 * 109.47310 * 300.00293 * 6 5 4 35 35 H 1.09004 * 109.47330 * 60.00123 * 7 6 5 36 36 H 1.09005 * 109.47124 * 300.00327 * 7 6 5 37 37 H 0.96999 * 119.99984 * 359.97438 * 8 7 6 38 38 H 1.07998 * 120.40684 * 180.27220 * 11 10 9 39 39 H 1.08002 * 120.71681 * 179.77585 * 12 11 10 40 40 H 1.08000 * 120.40412 * 180.02562 * 13 12 11 41 41 H 1.09005 * 109.47011 * 89.99830 * 18 17 15 42 42 H 1.09003 * 109.47371 * 210.00321 * 18 17 15 43 43 H 1.08996 * 109.47192 * 330.00050 * 18 17 15 44 44 H 1.09008 * 109.46724 * 209.99861 * 19 17 15 45 45 H 1.08993 * 109.47292 * 329.99339 * 19 17 15 46 46 H 0.96994 * 120.00162 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 16 2.1346 -0.8550 1.4812 5 6 1.5664 0.2155 2.8309 6 6 2.0040 -0.3783 4.1714 7 6 1.5242 0.5242 5.3099 8 7 1.9437 -0.0439 6.5934 9 6 1.6213 0.6018 7.7744 10 7 0.9375 1.7356 7.7259 11 6 0.6093 2.3753 8.8361 12 6 0.9986 1.8511 10.0587 13 6 1.7173 0.6660 10.0730 14 7 2.0088 0.0744 8.9264 15 6 2.0323 -0.7104 -1.2304 16 8 2.3208 -1.8871 -1.1759 17 7 2.1610 -0.0381 -2.3914 18 6 1.8131 1.3835 -2.4571 19 6 2.6489 -0.7289 -3.5877 20 6 1.4816 -1.3084 -4.3442 21 1 0.4768 -1.1758 -3.9711 22 6 1.6963 -2.0080 -5.5129 23 7 2.9199 -2.1699 -5.9669 24 14 0.2494 -2.7270 -6.4503 25 1 -0.6732 -1.6343 -6.8507 26 1 0.7439 -3.4271 -7.6629 27 1 -0.4728 -3.6915 -5.5823 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.4792 0.2882 2.8037 32 1 2.0001 1.2086 2.7141 33 1 3.0912 -0.4514 4.1988 34 1 1.5699 -1.3714 4.2880 35 1 0.4369 0.5970 5.2823 36 1 1.9579 1.5175 5.1935 37 1 2.4467 -0.8730 6.6156 38 1 0.0480 3.2968 8.7904 39 1 0.7470 2.3549 10.9803 40 1 2.0353 0.2309 11.0090 41 1 2.6922 1.9839 -2.2228 42 1 1.4643 1.6262 -3.4609 43 1 1.0240 1.5981 -1.7365 44 1 3.1796 -0.0213 -4.2248 45 1 3.3256 -1.5311 -3.2934 46 1 3.0709 -2.6617 -6.7892 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068062167.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:18 Heat of formation + Delta-G solvation = 19.613519 kcal Electronic energy + Delta-G solvation = -25254.327805 eV Core-core repulsion = 21498.740059 eV Total energy + Delta-G solvation = -3755.587747 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.22273 -39.10317 -37.16709 -34.88147 -34.00361 -33.79191 -33.22597 -32.24653 -30.70560 -27.84851 -26.57712 -26.00276 -24.89452 -24.39001 -23.28227 -22.52352 -21.95626 -18.74313 -18.39590 -17.82015 -16.66889 -16.56158 -16.37417 -16.19321 -16.08106 -15.42574 -15.22485 -14.91111 -14.72639 -14.64812 -14.30294 -13.89324 -13.77895 -13.47253 -13.32394 -12.99192 -12.47893 -12.29591 -12.14243 -11.97486 -11.90940 -11.77220 -11.48547 -11.34185 -11.23048 -11.19378 -11.15933 -10.90114 -10.71427 -10.57779 -10.17486 -9.74442 -9.67132 -9.48070 -8.98971 -8.48669 -8.44656 -7.71636 -7.55007 -6.05669 -4.10854 0.80301 0.83425 1.49206 2.48666 2.59244 3.30174 3.32119 3.35855 3.40538 3.56024 3.82180 3.89520 4.25451 4.39279 4.42986 4.54919 4.60241 4.71667 4.85677 4.86930 4.88867 5.00049 5.08378 5.13769 5.24233 5.28754 5.33954 5.40698 5.51951 5.58867 5.68645 5.72831 5.74275 5.85744 5.90955 6.09147 6.21164 6.41947 6.70493 6.98958 7.07330 7.40758 7.47908 7.89804 7.96230 8.20464 8.31703 8.85353 9.00809 9.54108 11.02418 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.035338 B = 0.001579 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.164685 B =17733.315285 C =17858.187752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 H 0.101 0.899 4 S -0.184 6.184 5 C -0.104 4.104 6 C -0.115 4.115 7 C 0.143 3.857 8 N -0.697 5.697 9 C 0.564 3.436 10 N -0.569 5.569 11 C 0.192 3.808 12 C -0.298 4.298 13 C 0.193 3.807 14 N -0.573 5.573 15 C 0.525 3.475 16 O -0.521 6.521 17 N -0.596 5.596 18 C 0.079 3.921 19 C 0.247 3.753 20 C -0.529 4.529 21 H 0.057 0.943 22 C 0.062 3.938 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.276 1.276 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.415 0.585 38 H 0.166 0.834 39 H 0.143 0.857 40 H 0.166 0.834 41 H 0.045 0.955 42 H 0.077 0.923 43 H 0.057 0.943 44 H 0.034 0.966 45 H 0.045 0.955 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.637 12.550 29.345 32.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.222 4.222 3 H 0.120 0.880 4 S 0.043 5.957 5 C -0.253 4.253 6 C -0.154 4.154 7 C 0.017 3.983 8 N -0.333 5.333 9 C 0.207 3.793 10 N -0.292 5.292 11 C 0.024 3.976 12 C -0.324 4.324 13 C 0.025 3.975 14 N -0.296 5.296 15 C 0.308 3.692 16 O -0.397 6.397 17 N -0.329 5.329 18 C -0.065 4.065 19 C 0.128 3.872 20 C -0.568 4.568 21 H 0.075 0.925 22 C -0.140 4.140 23 N -0.533 5.533 24 Si 0.726 3.274 25 H -0.203 1.203 26 H -0.211 1.211 27 H -0.202 1.202 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.253 0.747 38 H 0.183 0.817 39 H 0.161 0.839 40 H 0.183 0.817 41 H 0.064 0.936 42 H 0.095 0.905 43 H 0.076 0.924 44 H 0.052 0.948 45 H 0.063 0.937 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.587 10.494 28.146 30.253 hybrid contribution -1.547 1.080 0.095 1.889 sum -5.134 11.574 28.242 30.950 Atomic orbital electron populations 1.21982 0.91327 1.04207 1.02448 1.23434 1.00541 1.02611 0.95664 0.88048 1.87437 1.74484 1.35838 0.97917 1.23318 1.04176 1.01752 0.96023 1.21455 1.02734 0.99854 0.91381 1.21296 1.00129 0.96830 0.80015 1.44151 1.60037 1.27359 1.01787 1.19342 0.87315 0.86286 0.86353 1.67952 1.18696 1.09643 1.32916 1.22953 0.90913 0.96758 0.86938 1.22535 1.08034 1.01186 1.00603 1.22926 0.88924 0.90236 0.95444 1.67912 1.27250 1.36340 0.98086 1.19362 0.79342 0.87117 0.83349 1.90714 1.49437 1.15214 1.84289 1.48076 1.64196 1.09818 1.10807 1.21733 0.99205 0.82421 1.03182 1.19328 0.95323 0.92769 0.79809 1.21379 0.93352 1.34820 1.07224 0.92490 1.24934 0.95955 0.95861 0.97286 1.69919 1.19661 1.41389 1.22286 0.86549 0.82400 0.79337 0.79082 1.20256 1.21131 1.20152 0.90553 0.91940 0.90964 0.89734 0.89944 0.90114 0.90042 0.91213 0.91223 0.74712 0.81668 0.83927 0.81667 0.93600 0.90451 0.92386 0.94801 0.93719 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.86 37.15 0.33 -1.49 16 2 C -0.09 -1.37 2.33 -27.89 -0.06 -1.43 16 3 H 0.10 1.28 6.92 -51.92 -0.36 0.92 16 4 S -0.18 -2.69 20.46 -107.50 -2.20 -4.89 16 5 C -0.10 -0.95 5.64 37.16 0.21 -0.74 16 6 C -0.12 -0.91 5.34 -26.73 -0.14 -1.06 16 7 C 0.14 1.10 5.65 -4.05 -0.02 1.07 16 8 N -0.70 -5.98 5.70 -62.31 -0.36 -6.34 16 9 C 0.56 5.69 8.43 -322.81 -2.72 2.97 16 10 N -0.57 -5.46 9.59 -13.93 -0.13 -5.59 16 11 C 0.19 1.29 11.30 -17.23 -0.19 1.10 16 12 C -0.30 -1.63 10.16 -39.31 -0.40 -2.03 16 13 C 0.19 1.30 11.30 -17.22 -0.19 1.10 16 14 N -0.57 -5.56 10.46 -13.93 -0.15 -5.70 16 15 C 0.52 11.06 6.80 -10.99 -0.07 10.98 16 16 O -0.52 -13.47 15.72 5.56 0.09 -13.38 16 17 N -0.60 -12.64 2.86 -182.95 -0.52 -13.17 16 18 C 0.08 1.22 9.87 59.85 0.59 1.81 16 19 C 0.25 6.48 5.16 -5.19 -0.03 6.45 16 20 C -0.53 -15.00 9.39 -34.44 -0.32 -15.32 16 21 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 22 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 24 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 28 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.06 0.61 6.92 -51.93 -0.36 0.25 16 30 H 0.07 0.91 6.84 -51.93 -0.36 0.56 16 31 H 0.08 0.70 7.14 -51.93 -0.37 0.33 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.42 3.15 8.59 -40.82 -0.35 2.80 16 38 H 0.17 0.58 8.06 -52.49 -0.42 0.16 16 39 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 40 H 0.17 0.57 8.06 -52.49 -0.42 0.15 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 43 H 0.06 0.72 5.17 -51.93 -0.27 0.45 16 44 H 0.03 0.89 8.07 -51.92 -0.42 0.47 16 45 H 0.04 1.33 7.42 -51.93 -0.39 0.94 16 46 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 397.03 15.07 5.98 5.98 Total: -1.00 -36.21 397.03 -11.76 -47.97 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -7.06 Total: -0.94 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: -3.13 Total: 5.08 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: -0.42 Total: -56.66 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.09 Total: -13.38 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -2.69 SS G_CDS: -2.20 Total: -4.89 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.21 -11.76 -47.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068062167.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.585 kcal (2) G-P(sol) polarization free energy of solvation -36.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds