Wall clock time and date at job start Tue Mar 31 2020 21:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.46754 * 2 1 4 4 S 1.81400 * 109.47155 * 119.99497 * 2 1 3 5 5 C 1.81394 * 103.00249 * 295.00018 * 4 2 1 6 6 C 1.53005 * 109.47197 * 179.97438 * 5 4 2 7 7 C 1.52992 * 109.47277 * 180.02562 * 6 5 4 8 8 N 1.46499 * 109.47267 * 180.02562 * 7 6 5 9 9 C 1.38405 * 119.99936 * 180.02562 * 8 7 6 10 10 N 1.32494 * 119.22088 * 359.73198 * 9 8 7 11 11 C 1.32272 * 120.74414 * 179.75955 * 10 9 8 12 12 C 1.38606 * 119.19379 * 0.50690 * 11 10 9 13 13 C 1.38603 * 118.56259 * 359.74450 * 12 11 10 14 14 N 1.32283 * 119.19111 * 0.02562 * 13 12 11 15 15 C 1.50699 * 109.47311 * 239.99893 * 2 1 3 16 16 O 1.21280 * 120.00012 * 264.99897 * 15 2 1 17 17 N 1.34774 * 119.99879 * 84.99876 * 15 2 1 18 18 C 1.46497 * 120.00291 * 0.02562 * 17 15 2 19 19 C 1.46507 * 119.99597 * 180.02562 * 17 15 2 20 20 C 1.50693 * 109.47091 * 90.00071 * 19 17 15 21 21 H 1.07999 * 120.00225 * 359.97438 * 20 19 17 22 22 C 1.37882 * 120.00062 * 179.97438 * 20 19 17 23 23 N 1.31514 * 119.99753 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00311 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47075 * 60.00077 * 24 22 20 26 26 H 1.48492 * 109.47209 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.46944 * 300.00204 * 24 22 20 28 28 H 1.09001 * 109.46945 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47418 * 300.00025 * 1 2 3 30 30 H 1.08997 * 109.47262 * 60.00384 * 1 2 3 31 31 H 1.08997 * 109.46788 * 60.00283 * 5 4 2 32 32 H 1.08992 * 109.47374 * 299.99867 * 5 4 2 33 33 H 1.09004 * 109.46840 * 59.99903 * 6 5 4 34 34 H 1.09005 * 109.47310 * 300.00293 * 6 5 4 35 35 H 1.09004 * 109.47330 * 60.00123 * 7 6 5 36 36 H 1.09005 * 109.47124 * 300.00327 * 7 6 5 37 37 H 0.96999 * 119.99984 * 359.97438 * 8 7 6 38 38 H 1.07998 * 120.40684 * 180.27220 * 11 10 9 39 39 H 1.08002 * 120.71681 * 179.77585 * 12 11 10 40 40 H 1.08000 * 120.40412 * 180.02562 * 13 12 11 41 41 H 1.09005 * 109.47011 * 89.99830 * 18 17 15 42 42 H 1.09003 * 109.47371 * 210.00321 * 18 17 15 43 43 H 1.08996 * 109.47192 * 330.00050 * 18 17 15 44 44 H 1.09008 * 109.46724 * 209.99861 * 19 17 15 45 45 H 1.08993 * 109.47292 * 329.99339 * 19 17 15 46 46 H 0.96994 * 120.00162 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 16 2.1346 -0.8550 1.4812 5 6 1.5664 0.2155 2.8309 6 6 2.0040 -0.3783 4.1714 7 6 1.5242 0.5242 5.3099 8 7 1.9437 -0.0439 6.5934 9 6 1.6213 0.6018 7.7744 10 7 0.9375 1.7356 7.7259 11 6 0.6093 2.3753 8.8361 12 6 0.9986 1.8511 10.0587 13 6 1.7173 0.6660 10.0730 14 7 2.0088 0.0744 8.9264 15 6 2.0323 -0.7104 -1.2304 16 8 2.3208 -1.8871 -1.1759 17 7 2.1610 -0.0381 -2.3914 18 6 1.8131 1.3835 -2.4571 19 6 2.6489 -0.7289 -3.5877 20 6 1.4816 -1.3084 -4.3442 21 1 0.4768 -1.1758 -3.9711 22 6 1.6963 -2.0080 -5.5129 23 7 2.9199 -2.1699 -5.9669 24 14 0.2494 -2.7270 -6.4503 25 1 -0.6732 -1.6343 -6.8507 26 1 0.7439 -3.4271 -7.6629 27 1 -0.4728 -3.6915 -5.5823 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.4792 0.2882 2.8037 32 1 2.0001 1.2086 2.7141 33 1 3.0912 -0.4514 4.1988 34 1 1.5699 -1.3714 4.2880 35 1 0.4369 0.5970 5.2823 36 1 1.9579 1.5175 5.1935 37 1 2.4467 -0.8730 6.6156 38 1 0.0480 3.2968 8.7904 39 1 0.7470 2.3549 10.9803 40 1 2.0353 0.2309 11.0090 41 1 2.6922 1.9839 -2.2228 42 1 1.4643 1.6262 -3.4609 43 1 1.0240 1.5981 -1.7365 44 1 3.1796 -0.0213 -4.2248 45 1 3.3256 -1.5311 -3.2934 46 1 3.0709 -2.6617 -6.7892 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068062167.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:18 Heat of formation + Delta-G solvation = -3.093081 kcal Electronic energy + Delta-G solvation = -25255.312437 eV Core-core repulsion = 21498.740059 eV Total energy + Delta-G solvation = -3756.572379 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.75536 -40.76001 -37.76813 -36.66214 -35.03137 -34.55569 -34.39154 -33.86455 -31.26382 -29.76884 -27.50402 -27.20351 -25.96500 -25.41157 -24.24423 -23.80930 -22.69324 -20.23811 -19.02530 -18.69663 -18.41427 -18.13894 -17.64732 -16.87333 -16.79741 -16.51805 -16.28218 -16.18197 -15.86014 -15.64564 -15.26001 -15.00883 -14.71292 -14.52598 -14.20639 -14.08817 -14.02393 -13.56467 -13.46255 -13.24158 -13.10310 -13.01177 -12.92089 -12.78276 -12.54285 -12.23531 -12.16195 -12.06894 -11.84185 -11.78079 -11.74856 -11.25852 -10.79190 -10.65596 -10.63924 -10.04224 -9.48613 -9.04182 -8.68169 -8.23799 -6.38991 0.30642 0.31931 0.42343 1.35731 1.40517 1.47481 1.54765 1.77989 1.95821 2.28916 2.42194 3.01702 3.05913 3.34592 3.53307 3.76356 3.85955 3.90319 3.94685 3.95443 3.99594 4.10410 4.33429 4.44021 4.44443 4.52338 4.55350 4.63319 4.66590 4.68915 4.74514 4.89795 4.96827 4.97041 5.04800 5.11724 5.15824 5.19649 5.45754 5.52198 5.79095 5.86814 6.03113 6.18062 6.51369 6.63128 6.71429 7.24018 7.39205 7.39996 8.83297 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.035338 B = 0.001579 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.164685 B =17733.315285 C =17858.187752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.071 4.071 3 H 0.135 0.865 4 S -0.257 6.257 5 C -0.079 4.079 6 C -0.106 4.106 7 C 0.156 3.844 8 N -0.701 5.701 9 C 0.542 3.458 10 N -0.591 5.591 11 C 0.178 3.822 12 C -0.286 4.286 13 C 0.177 3.823 14 N -0.601 5.601 15 C 0.513 3.487 16 O -0.583 6.583 17 N -0.603 5.603 18 C 0.072 3.928 19 C 0.260 3.740 20 C -0.545 4.545 21 H 0.055 0.945 22 C 0.008 3.992 23 N -0.928 5.928 24 Si 0.968 3.032 25 H -0.258 1.258 26 H -0.278 1.278 27 H -0.279 1.279 28 H 0.051 0.949 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.416 0.584 38 H 0.195 0.805 39 H 0.176 0.824 40 H 0.194 0.806 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.027 0.973 45 H -0.005 1.005 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.863 15.180 31.315 35.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.202 4.202 3 H 0.153 0.847 4 S -0.029 6.029 5 C -0.228 4.228 6 C -0.145 4.145 7 C 0.031 3.969 8 N -0.338 5.338 9 C 0.184 3.816 10 N -0.315 5.315 11 C 0.012 3.988 12 C -0.311 4.311 13 C 0.011 3.989 14 N -0.325 5.325 15 C 0.299 3.701 16 O -0.463 6.463 17 N -0.335 5.335 18 C -0.070 4.070 19 C 0.139 3.861 20 C -0.584 4.584 21 H 0.074 0.926 22 C -0.192 4.192 23 N -0.567 5.567 24 Si 0.792 3.208 25 H -0.182 1.182 26 H -0.203 1.203 27 H -0.205 1.205 28 H 0.070 0.930 29 H 0.122 0.878 30 H 0.097 0.903 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.254 0.746 38 H 0.212 0.788 39 H 0.194 0.806 40 H 0.211 0.789 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.114 0.886 44 H 0.045 0.955 45 H 0.013 0.987 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.834 13.196 30.145 33.420 hybrid contribution -0.815 0.317 -0.356 0.944 sum -6.648 13.513 29.789 33.379 Atomic orbital electron populations 1.22008 0.89328 1.03397 1.04798 1.23269 1.01753 1.02870 0.92331 0.84704 1.87756 1.75569 1.39002 1.00582 1.23341 1.05128 1.00959 0.93351 1.21352 1.02473 0.99703 0.91003 1.21132 0.99914 0.96415 0.79486 1.44177 1.60308 1.27505 1.01859 1.19586 0.88224 0.86962 0.86790 1.67972 1.19327 1.09820 1.34388 1.23585 0.90861 0.97560 0.86828 1.22903 1.06271 1.00379 1.01537 1.23543 0.88879 0.90847 0.95634 1.67928 1.28269 1.37390 0.98864 1.20418 0.78062 0.86749 0.84825 1.90674 1.51906 1.18201 1.85507 1.48086 1.63848 1.12015 1.09531 1.22060 1.01654 0.79043 1.04235 1.18781 0.94152 0.91638 0.81527 1.21668 0.93674 1.35297 1.07717 0.92648 1.25877 0.98871 0.96086 0.98319 1.70046 1.21838 1.42053 1.22808 0.85457 0.78947 0.78800 0.77547 1.18192 1.20343 1.20470 0.93020 0.87803 0.90267 0.87944 0.87955 0.90498 0.90552 0.91264 0.91233 0.74645 0.78782 0.80618 0.78949 0.90962 0.90985 0.88598 0.95500 0.98655 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.86 71.98 0.64 -2.54 16 2 C -0.07 -2.02 2.33 29.85 0.07 -1.95 16 3 H 0.14 2.91 6.92 -2.39 -0.02 2.90 16 4 S -0.26 -7.37 20.46 -56.49 -1.16 -8.52 16 5 C -0.08 -1.25 5.64 71.98 0.41 -0.84 16 6 C -0.11 -1.54 5.34 30.59 0.16 -1.38 16 7 C 0.16 2.17 5.65 86.38 0.49 2.66 16 8 N -0.70 -11.74 5.70 -351.05 -2.00 -13.74 16 9 C 0.54 10.59 8.43 261.49 2.20 12.79 16 10 N -0.59 -10.57 9.59 -197.99 -1.90 -12.47 16 11 C 0.18 2.01 11.30 84.71 0.96 2.96 16 12 C -0.29 -2.39 10.16 22.44 0.23 -2.16 16 13 C 0.18 2.09 11.30 84.71 0.96 3.05 16 14 N -0.60 -11.29 10.46 -197.99 -2.07 -13.36 16 15 C 0.51 21.98 6.80 87.66 0.60 22.58 16 16 O -0.58 -31.83 15.72 -3.03 -0.05 -31.88 16 17 N -0.60 -25.83 2.86 -851.13 -2.43 -28.26 16 18 C 0.07 2.08 9.87 127.77 1.26 3.34 16 19 C 0.26 14.29 5.16 85.63 0.44 14.73 16 20 C -0.55 -31.70 9.39 25.60 0.24 -31.46 16 21 H 0.06 3.16 7.81 -2.91 -0.02 3.13 16 22 C 0.01 0.44 5.46 84.66 0.46 0.90 16 23 N -0.93 -56.74 13.29 21.45 0.28 -56.46 16 24 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 25 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 26 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 27 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 28 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.10 1.57 6.92 -2.38 -0.02 1.56 16 30 H 0.08 1.74 6.84 -2.39 -0.02 1.73 16 31 H 0.10 1.31 7.14 -2.39 -0.02 1.29 16 32 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.42 6.38 8.59 -92.71 -0.80 5.58 16 38 H 0.20 0.79 8.06 -2.91 -0.02 0.77 16 39 H 0.18 0.20 8.06 -2.91 -0.02 0.18 16 40 H 0.19 0.92 8.06 -2.91 -0.02 0.89 16 41 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 42 H 0.07 2.17 8.07 -2.39 -0.02 2.15 16 43 H 0.10 2.03 5.17 -2.39 -0.01 2.02 16 44 H 0.03 1.48 8.07 -2.38 -0.02 1.47 16 45 H 0.00 -0.30 7.42 -2.39 -0.02 -0.32 16 46 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -84.85 397.03 2.01 -82.85 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.19 Total: 11.97 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: 9.11 Total: 22.68 kcal Atomic # 7 Polarization: -116.18 SS G_CDS: -8.12 Total: -124.29 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -0.05 Total: -31.88 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 16 Polarization: -7.37 SS G_CDS: -1.16 Total: -8.52 kcal Total: -84.85 2.01 -82.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068062167.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.754 kcal (2) G-P(sol) polarization free energy of solvation -84.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds