Wall clock time and date at job start Tue Mar 31 2020 21:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46912 * 2 1 4 4 C 1.50701 * 109.46902 * 119.99456 * 2 1 3 5 5 O 1.21277 * 119.99731 * 86.19537 * 4 2 1 6 6 N 1.34779 * 120.00004 * 266.19412 * 4 2 1 7 7 C 1.46494 * 120.00353 * 5.26116 * 6 4 2 8 8 C 1.50698 * 109.47049 * 270.00239 * 7 6 4 9 9 H 1.07994 * 120.00001 * 359.97438 * 8 7 6 10 10 C 1.37881 * 119.99668 * 179.97438 * 8 7 6 11 11 N 1.31518 * 120.00208 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99798 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46843 * 90.00465 * 12 10 8 14 14 H 1.48502 * 109.47075 * 209.99892 * 12 10 8 15 15 H 1.48503 * 109.47209 * 330.00436 * 12 10 8 16 16 C 1.46505 * 119.99427 * 185.26013 * 6 4 2 17 17 C 1.53007 * 109.46917 * 85.98689 * 16 6 4 18 18 N 1.46901 * 109.47127 * 179.97438 * 17 16 6 19 19 C 1.47015 * 111.00069 * 293.63665 * 18 17 16 20 20 C 1.53094 * 109.25826 * 177.60699 * 19 18 17 21 21 O 1.43021 * 109.25813 * 56.84450 * 20 19 18 22 22 C 1.43013 * 113.73981 * 301.33028 * 21 20 19 23 23 C 1.47012 * 110.99793 * 170.00001 * 18 17 16 24 24 C 1.52997 * 109.47477 * 239.99776 * 2 1 3 25 25 F 1.39902 * 109.46935 * 305.19011 * 24 2 1 26 26 F 1.39897 * 109.46851 * 65.18547 * 24 2 1 27 27 F 1.39897 * 109.47079 * 185.18520 * 24 2 1 28 28 H 1.08997 * 109.47079 * 60.00625 * 1 2 3 29 29 H 1.08999 * 109.46912 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47430 * 300.00045 * 1 2 3 31 31 H 1.09010 * 109.46712 * 30.00013 * 7 6 4 32 32 H 1.09004 * 109.47227 * 149.99752 * 7 6 4 33 33 H 0.96996 * 119.99725 * 179.97438 * 11 10 8 34 34 H 1.09004 * 109.46832 * 205.97811 * 16 6 4 35 35 H 1.08990 * 109.47540 * 325.98403 * 16 6 4 36 36 H 1.08995 * 109.46788 * 299.99465 * 17 16 6 37 37 H 1.09002 * 109.46883 * 59.99408 * 17 16 6 38 38 H 1.09004 * 109.50439 * 297.54408 * 19 18 17 39 39 H 1.08999 * 109.50783 * 57.66577 * 19 18 17 40 40 H 1.08995 * 109.50749 * 296.91407 * 20 19 18 41 41 H 1.08995 * 109.54174 * 176.80447 * 20 19 18 42 42 H 1.08999 * 109.50922 * 298.73824 * 22 21 20 43 43 H 1.09001 * 109.54196 * 178.62347 * 22 21 20 44 44 H 1.09004 * 109.50488 * 302.32599 * 23 18 17 45 45 H 1.08994 * 109.50790 * 62.41611 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.1687 -1.9154 1.2219 6 7 2.3300 -0.0064 2.3407 7 6 2.0572 1.4321 2.3911 8 6 3.2611 2.1894 1.8929 9 1 4.1415 1.6529 1.5715 10 6 3.2385 3.5673 1.8477 11 7 2.1665 4.2206 2.2397 12 14 4.7311 4.5061 1.2309 13 1 4.6197 4.7037 -0.2366 14 1 4.7977 5.8277 1.9047 15 1 5.9622 3.7330 1.5343 16 6 2.9263 -0.6798 3.4970 17 6 4.4460 -0.7345 3.3276 18 7 5.0440 -1.4093 4.4874 19 6 4.8635 -0.6139 5.7105 20 6 5.4470 -1.3793 6.9012 21 8 6.8229 -1.6732 6.6445 22 6 7.0352 -2.4472 5.4608 23 6 6.4679 -1.6926 4.2556 24 6 2.0401 -0.7213 -1.2492 25 9 1.4789 -2.0013 -1.3103 26 9 1.6737 0.0034 -2.3883 27 9 3.4340 -0.8253 -1.1910 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.1976 1.6611 1.7610 32 1 1.8429 1.7255 3.4188 33 1 2.1509 5.1900 2.2082 34 1 2.6816 -0.1282 4.4048 35 1 2.5322 -1.6934 3.5704 36 1 4.6907 -1.2861 2.4199 37 1 4.8400 0.2791 3.2543 38 1 5.3789 0.3406 5.6034 39 1 3.8007 -0.4377 5.8765 40 1 4.8962 -2.3093 7.0412 41 1 5.3667 -0.7697 7.8012 42 1 6.5305 -3.4083 5.5590 43 1 8.1036 -2.6099 5.3183 44 1 6.5762 -2.3038 3.3595 45 1 7.0088 -0.7554 4.1245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079844536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:02 Heat of formation + Delta-G solvation = -248.925390 kcal Electronic energy + Delta-G solvation = -31806.346571 eV Core-core repulsion = 27022.211741 eV Total energy + Delta-G solvation = -4784.134830 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.14657 -48.66193 -48.56967 -41.20595 -40.41748 -37.52527 -36.46199 -34.92003 -34.56640 -32.21014 -31.07727 -29.14684 -27.53574 -27.29966 -25.24905 -25.01431 -24.25647 -22.83509 -21.36554 -20.52428 -19.64846 -19.40806 -18.79698 -18.29423 -17.94388 -17.54642 -17.14407 -16.69499 -16.36229 -16.17278 -16.16139 -15.97031 -15.60001 -15.48611 -15.30046 -15.03932 -14.88676 -14.80206 -14.73627 -14.61350 -14.43784 -14.10967 -14.08492 -13.62486 -13.37662 -13.28503 -13.15190 -12.99367 -12.81824 -12.66502 -12.57627 -12.37354 -12.32563 -12.17205 -11.82299 -11.70421 -11.44316 -10.92351 -10.70775 -10.60103 -9.64852 -9.45708 -8.24738 -6.37345 1.26715 1.36669 1.41918 1.48014 1.75402 2.03544 2.36391 2.68987 2.74375 2.94947 3.03424 3.07303 3.12357 3.59291 3.82896 3.89209 3.91746 4.00599 4.10818 4.15394 4.19590 4.31651 4.39821 4.46913 4.57305 4.60846 4.69253 4.71430 4.76200 4.78342 4.81320 4.88685 4.96451 5.02322 5.04799 5.20512 5.58356 5.70481 5.86582 5.91170 5.99996 6.16158 6.39818 6.73676 7.07608 7.34928 8.80618 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.009028 B = 0.004653 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3100.779153 B = 6016.164524 C = 7810.985793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.163 4.163 3 H 0.142 0.858 4 C 0.525 3.475 5 O -0.570 6.570 6 N -0.588 5.588 7 C 0.246 3.754 8 C -0.545 4.545 9 H 0.051 0.949 10 C 0.033 3.967 11 N -0.910 5.910 12 Si 0.940 3.060 13 H -0.273 1.273 14 H -0.281 1.281 15 H -0.278 1.278 16 C 0.132 3.868 17 C 0.057 3.943 18 N -0.534 5.534 19 C 0.012 3.988 20 C 0.068 3.932 21 O -0.404 6.404 22 C 0.069 3.931 23 C 0.015 3.985 24 C 0.472 3.528 25 F -0.174 7.174 26 F -0.175 7.175 27 F -0.192 7.192 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.043 0.957 32 H 0.030 0.970 33 H 0.269 0.731 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.029 0.971 38 H 0.028 0.972 39 H 0.096 0.904 40 H 0.069 0.931 41 H 0.116 0.884 42 H 0.067 0.933 43 H 0.117 0.883 44 H 0.089 0.911 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.053 -8.444 2.617 8.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.186 4.186 3 H 0.160 0.840 4 C 0.312 3.688 5 O -0.451 6.451 6 N -0.318 5.318 7 C 0.125 3.875 8 C -0.584 4.584 9 H 0.069 0.931 10 C -0.168 4.168 11 N -0.549 5.549 12 Si 0.766 3.234 13 H -0.199 1.199 14 H -0.206 1.206 15 H -0.203 1.203 16 C 0.009 3.991 17 C -0.072 4.072 18 N -0.260 5.260 19 C -0.116 4.116 20 C -0.009 4.009 21 O -0.323 6.323 22 C -0.007 4.007 23 C -0.113 4.113 24 C 0.418 3.582 25 F -0.156 7.156 26 F -0.157 7.157 27 F -0.173 7.173 28 H 0.115 0.885 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.048 0.952 38 H 0.047 0.953 39 H 0.114 0.886 40 H 0.087 0.913 41 H 0.134 0.866 42 H 0.085 0.915 43 H 0.135 0.865 44 H 0.107 0.893 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 0.964 -9.267 2.830 9.737 hybrid contribution 1.167 1.643 -1.039 2.267 sum 2.131 -7.624 1.791 8.116 Atomic orbital electron populations 1.21769 0.87356 1.04479 1.05808 1.22690 1.02989 1.03240 0.89640 0.84050 1.19909 0.77545 0.86643 0.84691 1.90686 1.55849 1.14629 1.83922 1.48090 1.59013 1.10884 1.13779 1.19318 0.96259 0.73810 0.98095 1.21610 1.01013 0.91557 1.44210 0.93097 1.25444 0.98026 0.98259 0.95106 1.69961 1.29006 1.08735 1.47171 0.85829 0.80394 0.78276 0.78878 1.19874 1.20644 1.20294 1.21272 0.91782 0.98165 0.87879 1.22254 0.95485 0.96553 0.92884 1.62215 1.14964 1.45863 1.02936 1.22936 1.02682 0.95081 0.90949 1.22773 0.81533 0.99931 0.96651 1.87941 1.26431 1.73785 1.44132 1.22744 1.02075 0.93510 0.82408 1.22858 0.87704 1.00036 1.00744 1.19991 0.75138 0.77699 0.85413 1.93178 1.84743 1.40950 1.96697 1.93171 1.91338 1.77536 1.53619 1.93161 1.31334 1.96196 1.96617 0.88477 0.90560 0.89371 0.93916 0.95170 0.92200 0.89571 0.90170 0.92522 0.95247 0.95321 0.88618 0.91308 0.86584 0.91453 0.86527 0.89284 0.95237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 8.78 71.98 0.63 -3.12 16 2 C -0.16 -5.64 1.88 -11.54 -0.02 -5.67 16 3 H 0.14 5.29 6.06 -2.39 -0.01 5.27 16 4 C 0.53 20.42 6.27 87.66 0.55 20.97 16 5 O -0.57 -24.30 15.17 -3.02 -0.05 -24.34 16 6 N -0.59 -22.73 2.46 -826.14 -2.03 -24.77 16 7 C 0.25 10.49 4.79 85.63 0.41 10.90 16 8 C -0.55 -26.08 8.38 25.60 0.21 -25.87 16 9 H 0.05 2.54 7.41 -2.91 -0.02 2.51 16 10 C 0.03 1.64 5.46 84.65 0.46 2.10 16 11 N -0.91 -46.51 13.29 21.45 0.28 -46.23 16 12 Si 0.94 40.23 29.54 68.60 2.03 42.26 16 13 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 14 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 15 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 16 C 0.13 4.58 5.39 86.38 0.47 5.05 16 17 C 0.06 2.00 5.26 86.31 0.45 2.45 16 18 N -0.53 -15.62 4.73 -895.20 -4.23 -19.85 16 19 C 0.01 0.30 5.44 86.31 0.47 0.77 16 20 C 0.07 1.46 7.01 72.01 0.50 1.97 16 21 O -0.40 -10.02 10.83 -148.98 -1.61 -11.63 16 22 C 0.07 1.49 7.01 72.02 0.50 1.99 16 23 C 0.01 0.39 5.65 86.32 0.49 0.88 16 24 C 0.47 16.32 2.52 71.98 0.18 16.50 16 25 F -0.17 -6.08 15.50 44.97 0.70 -5.38 16 26 F -0.18 -5.52 17.00 44.97 0.76 -4.76 16 27 F -0.19 -7.33 16.87 44.97 0.76 -6.57 16 28 H 0.10 2.25 7.94 -2.39 -0.02 2.23 16 29 H 0.08 2.02 7.68 -2.39 -0.02 2.00 16 30 H 0.09 2.37 7.30 -2.39 -0.02 2.35 16 31 H 0.04 1.83 5.77 -2.38 -0.01 1.81 16 32 H 0.03 1.36 7.87 -2.39 -0.02 1.34 16 33 H 0.27 13.16 8.31 -92.71 -0.77 12.39 16 34 H 0.09 2.76 6.22 -2.39 -0.01 2.75 16 35 H 0.08 2.80 7.48 -2.39 -0.02 2.78 16 36 H 0.06 2.16 8.04 -2.39 -0.02 2.14 16 37 H 0.03 1.17 7.45 -2.39 -0.02 1.15 16 38 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.10 2.35 6.38 -2.39 -0.02 2.33 16 40 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.09 2.22 8.09 -2.38 -0.02 2.20 16 45 H 0.03 0.84 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -56.97 371.38 2.93 -54.05 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 1.01 Total: 18.29 kcal Atomic # 6 Polarization: 23.62 SS G_CDS: 5.31 Total: 28.93 kcal Atomic # 7 Polarization: -84.86 SS G_CDS: -5.98 Total: -90.84 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -1.66 Total: -35.98 kcal Atomic # 9 Polarization: -18.93 SS G_CDS: 2.22 Total: -16.71 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Total: -56.97 2.93 -54.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079844536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.879 kcal (2) G-P(sol) polarization free energy of solvation -56.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -251.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -248.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds