Wall clock time and date at job start Tue Mar 31 2020 21:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47147 * 2 1 4 4 C 1.50699 * 109.46931 * 119.99866 * 2 1 3 5 5 O 1.21284 * 120.00319 * 93.59873 * 4 2 1 6 6 N 1.34783 * 120.00057 * 273.60148 * 4 2 1 7 7 C 1.46501 * 119.99580 * 359.97438 * 6 4 2 8 8 C 1.46494 * 120.00341 * 180.02562 * 6 4 2 9 9 C 1.50703 * 109.47088 * 89.99822 * 8 6 4 10 10 H 1.07998 * 120.00090 * 359.97438 * 9 8 6 11 11 C 1.37873 * 120.00089 * 180.02562 * 9 8 6 12 12 N 1.31523 * 120.00046 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00128 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47385 * 89.99847 * 13 11 9 15 15 H 1.48506 * 109.46887 * 209.99646 * 13 11 9 16 16 H 1.48497 * 109.47107 * 329.99302 * 13 11 9 17 17 N 1.46901 * 109.47101 * 239.99285 * 2 1 3 18 18 C 1.47168 * 110.99548 * 59.05683 * 17 2 1 19 19 C 1.52892 * 108.49543 * 52.15517 * 18 17 2 20 20 C 1.50714 * 109.96371 * 50.39688 * 19 18 17 21 21 C 1.38922 * 118.46089 * 163.25726 * 20 19 18 22 22 F 1.35103 * 119.83366 * 359.51794 * 21 20 19 23 23 C 1.38221 * 120.33368 * 179.80194 * 21 20 19 24 24 C 1.38445 * 119.76944 * 359.93483 * 23 21 20 25 25 F 1.35099 * 120.07523 * 180.02562 * 24 23 21 26 26 C 1.38243 * 119.84217 * 0.05824 * 24 23 21 27 27 C 1.37816 * 121.66632 * 343.09242 * 20 19 18 28 28 C 1.46626 * 111.00264 * 182.04153 * 17 2 1 29 29 H 1.09000 * 109.46635 * 60.00143 * 1 2 3 30 30 H 1.08993 * 109.47170 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46781 * 300.00575 * 1 2 3 32 32 H 1.08999 * 109.47057 * 90.00143 * 7 6 4 33 33 H 1.08997 * 109.47217 * 210.00343 * 7 6 4 34 34 H 1.09006 * 109.47281 * 330.00191 * 7 6 4 35 35 H 1.08991 * 109.47431 * 209.99836 * 8 6 4 36 36 H 1.09003 * 109.47139 * 329.99937 * 8 6 4 37 37 H 0.96994 * 120.00048 * 180.02562 * 12 11 9 38 38 H 1.08996 * 109.63293 * 292.44681 * 18 17 2 39 39 H 1.09002 * 109.62946 * 171.85103 * 18 17 2 40 40 H 1.08998 * 109.38754 * 290.24620 * 19 18 17 41 41 H 1.09003 * 109.39125 * 170.55013 * 19 18 17 42 42 H 1.07995 * 120.11390 * 179.97438 * 23 21 20 43 43 H 1.08007 * 119.78803 * 180.02562 * 26 24 23 44 44 H 1.09001 * 109.26761 * 49.36708 * 28 17 2 45 45 H 1.09000 * 109.27351 * 168.87804 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.2966 -1.8931 1.1826 6 7 2.1878 -0.0314 2.3844 7 6 1.8691 1.3973 2.4421 8 6 2.6766 -0.7218 3.5804 9 6 4.1810 -0.6444 3.6255 10 1 4.7192 -0.1326 2.8415 11 6 4.8704 -1.2280 4.6672 12 7 4.2151 -1.8517 5.6219 13 14 6.7351 -1.1327 4.7228 14 1 7.1467 0.0879 5.4618 15 1 7.2717 -2.3334 5.4125 16 1 7.2694 -1.0770 3.3384 17 7 2.0197 -0.6926 -1.1994 18 6 1.5294 -0.0386 -2.4231 19 6 1.8623 1.4515 -2.3434 20 6 3.3168 1.6358 -1.9940 21 6 3.8988 2.8775 -2.2162 22 9 3.1627 3.8802 -2.7434 23 6 5.2288 3.0906 -1.9061 24 6 5.9832 2.0608 -1.3702 25 9 7.2836 2.2624 -1.0643 26 6 5.4028 0.8257 -1.1494 27 6 4.0687 0.6105 -1.4624 28 6 3.4846 -0.7546 -1.2092 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.8229 1.5252 2.7200 33 1 2.5039 1.8816 3.1841 34 1 2.0432 1.8483 1.4651 35 1 2.2616 -0.2468 4.4693 36 1 2.3673 -1.7665 3.5488 37 1 4.7000 -2.2620 6.3549 38 1 0.4501 -0.1691 -2.5009 39 1 2.0179 -0.4768 -3.2934 40 1 1.2441 1.9199 -1.5776 41 1 1.6593 1.9198 -3.3065 42 1 5.6778 4.0572 -2.0807 43 1 5.9921 0.0231 -0.7309 44 1 3.8355 -1.1227 -0.2450 45 1 3.8107 -1.4363 -1.9947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120444310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:39 Heat of formation + Delta-G solvation = -82.682440 kcal Electronic energy + Delta-G solvation = -31040.190179 eV Core-core repulsion = 26694.033409 eV Total energy + Delta-G solvation = -4346.156770 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.20998 -49.07321 -40.89657 -38.89643 -37.01377 -34.80989 -32.88547 -32.57699 -32.20403 -30.14492 -29.12495 -27.78965 -25.90501 -25.08104 -24.51198 -23.26984 -22.58160 -22.00588 -20.00174 -18.36761 -17.80644 -17.45212 -16.88960 -16.49436 -16.37044 -16.10756 -16.01147 -15.45763 -15.28898 -15.04453 -14.73285 -14.50440 -14.37499 -14.16232 -14.01560 -13.78111 -13.18561 -12.96535 -12.80127 -12.43540 -12.32699 -12.25198 -12.08670 -11.95226 -11.88228 -11.75737 -11.55225 -11.30003 -11.26036 -11.10423 -10.93951 -10.86670 -10.57854 -10.17211 -9.64092 -8.98934 -8.86129 -8.72837 -8.45172 -8.29662 -7.65110 -6.05943 -4.10829 0.77516 0.80492 3.12925 3.28600 3.32295 3.35955 3.41001 3.62702 3.69600 4.03424 4.25551 4.34183 4.37463 4.43361 4.65222 4.75025 4.87877 4.94160 5.06785 5.16994 5.20474 5.28882 5.32425 5.40584 5.54762 5.61417 5.63092 5.65183 5.69927 5.74308 5.78377 5.81013 5.87246 5.89570 5.91639 6.13838 6.22846 6.28490 6.61083 6.86400 6.95909 7.10430 7.42788 7.52440 7.90341 8.21402 8.39989 8.88514 9.09482 9.54483 11.02084 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010188 B = 0.004983 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.564140 B = 5617.870318 C = 7332.607096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.052 3.948 3 H 0.066 0.934 4 C 0.509 3.491 5 O -0.523 6.523 6 N -0.601 5.601 7 C 0.081 3.919 8 C 0.246 3.754 9 C -0.525 4.525 10 H 0.056 0.944 11 C 0.063 3.937 12 N -0.894 5.894 13 Si 0.895 3.105 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.274 1.274 17 N -0.499 5.499 18 C 0.052 3.948 19 C -0.117 4.117 20 C -0.126 4.126 21 C 0.128 3.872 22 F -0.132 7.132 23 C -0.196 4.196 24 C 0.131 3.869 25 F -0.131 7.131 26 C -0.151 4.151 27 C -0.049 4.049 28 C 0.082 3.918 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.031 0.969 36 H 0.044 0.956 37 H 0.263 0.737 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.146 0.854 43 H 0.146 0.854 44 H 0.114 0.886 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.836 10.018 -17.314 20.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.059 4.059 3 H 0.083 0.917 4 C 0.294 3.706 5 O -0.399 6.399 6 N -0.334 5.334 7 C -0.063 4.063 8 C 0.127 3.873 9 C -0.564 4.564 10 H 0.074 0.926 11 C -0.140 4.140 12 N -0.533 5.533 13 Si 0.723 3.277 14 H -0.207 1.207 15 H -0.210 1.210 16 H -0.199 1.199 17 N -0.220 5.220 18 C -0.076 4.076 19 C -0.156 4.156 20 C -0.128 4.128 21 C 0.109 3.891 22 F -0.110 7.110 23 C -0.216 4.216 24 C 0.111 3.889 25 F -0.109 7.109 26 C -0.170 4.170 27 C -0.051 4.051 28 C -0.046 4.046 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.164 0.836 43 H 0.164 0.836 44 H 0.131 0.869 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.856 8.805 -17.119 19.854 hybrid contribution 1.723 1.476 0.179 2.276 sum -3.134 10.281 -16.941 20.063 Atomic orbital electron populations 1.21754 0.92262 1.03606 1.02073 1.21861 0.97217 0.96712 0.90113 0.91674 1.20016 0.79003 0.87594 0.83949 1.90676 1.50029 1.15267 1.83931 1.48169 1.64034 1.09050 1.12113 1.21690 0.99954 0.82906 1.01733 1.19285 0.94175 0.93615 0.80210 1.21391 0.91596 1.35442 1.07961 0.92609 1.24916 0.98593 0.94982 0.95470 1.69929 1.35694 1.35983 1.11651 0.86548 0.85425 0.77552 0.78224 1.20657 1.21030 1.19869 1.62379 1.07917 1.50878 1.00841 1.22325 1.01833 0.90322 0.93108 1.21082 0.91238 1.00216 1.03045 1.19576 0.97518 0.92090 1.03571 1.17152 0.88774 0.84960 0.98235 1.91499 1.76646 1.59119 1.83733 1.20914 0.93529 1.00902 1.06214 1.17185 0.78838 0.93963 0.98875 1.91540 1.33184 1.95526 1.90655 1.21237 0.95830 0.96902 1.03067 1.20284 0.92824 0.97420 0.94594 1.21432 0.87019 0.90677 1.05495 0.91810 0.90904 0.91642 0.93619 0.90751 0.92770 0.95074 0.93750 0.92702 0.89152 0.89872 0.89720 0.89687 0.83574 0.83607 0.86854 0.88155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.76 37.16 0.33 -1.34 16 2 C 0.05 0.77 1.09 -68.86 -0.08 0.69 16 3 H 0.07 0.91 3.43 -51.93 -0.18 0.73 16 4 C 0.51 10.22 5.72 -10.98 -0.06 10.16 16 5 O -0.52 -12.71 14.98 5.55 0.08 -12.62 16 6 N -0.60 -12.48 2.86 -182.96 -0.52 -13.00 16 7 C 0.08 1.30 10.08 59.85 0.60 1.90 16 8 C 0.25 6.35 5.16 -5.20 -0.03 6.32 16 9 C -0.53 -14.63 9.39 -34.44 -0.32 -14.95 16 10 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 11 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 12 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 13 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 17 N -0.50 -6.85 4.61 -229.59 -1.06 -7.91 16 18 C 0.05 0.52 5.44 -3.73 -0.02 0.50 16 19 C -0.12 -1.14 4.76 -27.93 -0.13 -1.27 16 20 C -0.13 -1.50 5.06 -104.52 -0.53 -2.03 16 21 C 0.13 1.51 7.23 -39.33 -0.28 1.23 16 22 F -0.13 -1.50 16.56 2.25 0.04 -1.46 16 23 C -0.20 -2.31 10.01 -39.51 -0.40 -2.70 16 24 C 0.13 1.73 7.30 -39.50 -0.29 1.44 16 25 F -0.13 -1.82 17.27 2.25 0.04 -1.78 16 26 C -0.15 -2.06 9.62 -39.40 -0.38 -2.44 16 27 C -0.05 -0.65 5.31 -104.64 -0.56 -1.20 16 28 C 0.08 1.17 5.22 -5.16 -0.03 1.14 16 29 H 0.06 0.58 6.07 -51.93 -0.32 0.26 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.75 7.96 -51.93 -0.41 0.33 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 34 H 0.05 0.75 5.83 -51.93 -0.30 0.44 16 35 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 36 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.09 0.76 6.74 -51.93 -0.35 0.41 16 39 H 0.08 0.75 8.05 -51.93 -0.42 0.33 16 40 H 0.08 0.81 6.30 -51.93 -0.33 0.48 16 41 H 0.08 0.71 7.93 -51.93 -0.41 0.29 16 42 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 43 H 0.15 1.97 8.06 -52.48 -0.42 1.55 16 44 H 0.11 2.06 5.93 -51.93 -0.31 1.75 16 45 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 364.50 15.07 5.49 5.49 Total: -1.00 -32.16 364.50 -8.39 -40.55 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -5.91 Total: 0.51 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -2.27 Total: -0.88 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: -0.85 Total: -46.53 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.08 Total: -12.62 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.08 Total: -3.24 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.16 -8.39 -40.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120444310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.132 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds