Wall clock time and date at job start Tue Mar 31 2020 21:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47147 * 2 1 4 4 C 1.50699 * 109.46931 * 119.99866 * 2 1 3 5 5 O 1.21284 * 120.00319 * 93.59873 * 4 2 1 6 6 N 1.34783 * 120.00057 * 273.60148 * 4 2 1 7 7 C 1.46501 * 119.99580 * 359.97438 * 6 4 2 8 8 C 1.46494 * 120.00341 * 180.02562 * 6 4 2 9 9 C 1.50703 * 109.47088 * 89.99822 * 8 6 4 10 10 H 1.07998 * 120.00090 * 359.97438 * 9 8 6 11 11 C 1.37873 * 120.00089 * 180.02562 * 9 8 6 12 12 N 1.31523 * 120.00046 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00128 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47385 * 89.99847 * 13 11 9 15 15 H 1.48506 * 109.46887 * 209.99646 * 13 11 9 16 16 H 1.48497 * 109.47107 * 329.99302 * 13 11 9 17 17 N 1.46901 * 109.47101 * 239.99285 * 2 1 3 18 18 C 1.47168 * 110.99548 * 59.05683 * 17 2 1 19 19 C 1.52892 * 108.49543 * 52.15517 * 18 17 2 20 20 C 1.50714 * 109.96371 * 50.39688 * 19 18 17 21 21 C 1.38922 * 118.46089 * 163.25726 * 20 19 18 22 22 F 1.35103 * 119.83366 * 359.51794 * 21 20 19 23 23 C 1.38221 * 120.33368 * 179.80194 * 21 20 19 24 24 C 1.38445 * 119.76944 * 359.93483 * 23 21 20 25 25 F 1.35099 * 120.07523 * 180.02562 * 24 23 21 26 26 C 1.38243 * 119.84217 * 0.05824 * 24 23 21 27 27 C 1.37816 * 121.66632 * 343.09242 * 20 19 18 28 28 C 1.46626 * 111.00264 * 182.04153 * 17 2 1 29 29 H 1.09000 * 109.46635 * 60.00143 * 1 2 3 30 30 H 1.08993 * 109.47170 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46781 * 300.00575 * 1 2 3 32 32 H 1.08999 * 109.47057 * 90.00143 * 7 6 4 33 33 H 1.08997 * 109.47217 * 210.00343 * 7 6 4 34 34 H 1.09006 * 109.47281 * 330.00191 * 7 6 4 35 35 H 1.08991 * 109.47431 * 209.99836 * 8 6 4 36 36 H 1.09003 * 109.47139 * 329.99937 * 8 6 4 37 37 H 0.96994 * 120.00048 * 180.02562 * 12 11 9 38 38 H 1.08996 * 109.63293 * 292.44681 * 18 17 2 39 39 H 1.09002 * 109.62946 * 171.85103 * 18 17 2 40 40 H 1.08998 * 109.38754 * 290.24620 * 19 18 17 41 41 H 1.09003 * 109.39125 * 170.55013 * 19 18 17 42 42 H 1.07995 * 120.11390 * 179.97438 * 23 21 20 43 43 H 1.08007 * 119.78803 * 180.02562 * 26 24 23 44 44 H 1.09001 * 109.26761 * 49.36708 * 28 17 2 45 45 H 1.09000 * 109.27351 * 168.87804 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.2966 -1.8931 1.1826 6 7 2.1878 -0.0314 2.3844 7 6 1.8691 1.3973 2.4421 8 6 2.6766 -0.7218 3.5804 9 6 4.1810 -0.6444 3.6255 10 1 4.7192 -0.1326 2.8415 11 6 4.8704 -1.2280 4.6672 12 7 4.2151 -1.8517 5.6219 13 14 6.7351 -1.1327 4.7228 14 1 7.1467 0.0879 5.4618 15 1 7.2717 -2.3334 5.4125 16 1 7.2694 -1.0770 3.3384 17 7 2.0197 -0.6926 -1.1994 18 6 1.5294 -0.0386 -2.4231 19 6 1.8623 1.4515 -2.3434 20 6 3.3168 1.6358 -1.9940 21 6 3.8988 2.8775 -2.2162 22 9 3.1627 3.8802 -2.7434 23 6 5.2288 3.0906 -1.9061 24 6 5.9832 2.0608 -1.3702 25 9 7.2836 2.2624 -1.0643 26 6 5.4028 0.8257 -1.1494 27 6 4.0687 0.6105 -1.4624 28 6 3.4846 -0.7546 -1.2092 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.8229 1.5252 2.7200 33 1 2.5039 1.8816 3.1841 34 1 2.0432 1.8483 1.4651 35 1 2.2616 -0.2468 4.4693 36 1 2.3673 -1.7665 3.5488 37 1 4.7000 -2.2620 6.3549 38 1 0.4501 -0.1691 -2.5009 39 1 2.0179 -0.4768 -3.2934 40 1 1.2441 1.9199 -1.5776 41 1 1.6593 1.9198 -3.3065 42 1 5.6778 4.0572 -2.0807 43 1 5.9921 0.0231 -0.7309 44 1 3.8355 -1.1227 -0.2450 45 1 3.8107 -1.4363 -1.9947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120444310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:38 Heat of formation + Delta-G solvation = -102.878758 kcal Electronic energy + Delta-G solvation = -31041.065957 eV Core-core repulsion = 26694.033409 eV Total energy + Delta-G solvation = -4347.032548 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.12541 -50.09552 -41.99497 -40.29173 -38.13588 -36.54823 -34.80469 -33.57995 -33.41363 -31.23601 -30.10990 -29.60181 -27.39610 -26.22637 -25.73197 -24.72250 -23.55666 -23.28274 -21.20616 -19.57701 -18.93589 -18.71806 -18.47949 -18.14353 -17.48990 -17.11601 -17.01108 -16.81946 -16.44867 -16.36800 -16.18071 -15.67215 -15.48370 -15.37615 -15.27058 -14.96829 -14.32060 -14.25455 -14.10846 -13.81143 -13.58782 -13.49473 -13.35412 -13.18592 -13.05299 -12.94173 -12.89114 -12.81843 -12.59292 -12.52167 -12.31033 -12.22745 -12.14586 -11.78536 -11.70531 -10.65601 -10.43021 -9.97891 -9.68568 -9.41511 -9.34001 -8.23802 -6.37960 -0.19812 -0.17001 1.33254 1.35466 1.45444 1.83396 2.15196 2.25196 2.38623 2.69901 2.86425 3.05748 3.27870 3.35670 3.48976 3.64428 3.74644 3.81645 3.94405 4.07752 4.13300 4.25877 4.38055 4.41328 4.50341 4.62393 4.63896 4.64812 4.73260 4.77447 4.80733 4.84529 4.90254 4.90790 4.94089 5.01162 5.08132 5.21440 5.22892 5.32505 5.54694 5.64894 5.80706 5.89523 6.03295 6.05294 6.69473 6.80022 7.28064 7.52004 8.83159 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010188 B = 0.004983 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.564140 B = 5617.870318 C = 7332.607096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.069 3.931 3 H 0.078 0.922 4 C 0.501 3.499 5 O -0.577 6.577 6 N -0.610 5.610 7 C 0.078 3.922 8 C 0.262 3.738 9 C -0.537 4.537 10 H 0.049 0.951 11 C 0.012 3.988 12 N -0.926 5.926 13 Si 0.959 3.041 14 H -0.265 1.265 15 H -0.279 1.279 16 H -0.274 1.274 17 N -0.515 5.515 18 C 0.053 3.947 19 C -0.116 4.116 20 C -0.120 4.120 21 C 0.131 3.869 22 F -0.124 7.124 23 C -0.187 4.187 24 C 0.117 3.883 25 F -0.139 7.139 26 C -0.166 4.166 27 C -0.058 4.058 28 C 0.089 3.911 29 H 0.104 0.896 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.022 0.978 36 H -0.001 1.001 37 H 0.267 0.733 38 H 0.114 0.886 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.168 0.832 43 H 0.133 0.867 44 H 0.065 0.935 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.821 12.657 -19.525 23.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.042 4.042 3 H 0.096 0.904 4 C 0.289 3.711 5 O -0.457 6.457 6 N -0.342 5.342 7 C -0.064 4.064 8 C 0.141 3.859 9 C -0.576 4.576 10 H 0.067 0.933 11 C -0.188 4.188 12 N -0.566 5.566 13 Si 0.784 3.216 14 H -0.190 1.190 15 H -0.204 1.204 16 H -0.198 1.198 17 N -0.237 5.237 18 C -0.074 4.074 19 C -0.154 4.154 20 C -0.121 4.121 21 C 0.111 3.889 22 F -0.102 7.102 23 C -0.207 4.207 24 C 0.098 3.902 25 F -0.117 7.117 26 C -0.186 4.186 27 C -0.060 4.060 28 C -0.040 4.040 29 H 0.122 0.878 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.040 0.960 36 H 0.017 0.983 37 H 0.076 0.924 38 H 0.132 0.868 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.128 0.872 42 H 0.185 0.815 43 H 0.151 0.849 44 H 0.084 0.916 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.865 11.494 -19.351 23.259 hybrid contribution 1.997 0.640 0.833 2.256 sum -3.869 12.134 -18.518 22.474 Atomic orbital electron populations 1.21812 0.89672 1.03381 1.04481 1.21753 0.98879 0.96007 0.87601 0.90436 1.21097 0.77649 0.87242 0.85101 1.90638 1.52197 1.17951 1.84888 1.48176 1.63966 1.11034 1.11033 1.21939 1.01557 0.79774 1.03174 1.18718 0.93334 0.91657 0.82241 1.21627 0.92785 1.35413 1.07772 0.93269 1.25770 1.03417 0.94487 0.95078 1.70041 1.37599 1.36693 1.12270 0.85540 0.79627 0.78194 0.78252 1.19011 1.20444 1.19848 1.62372 1.07279 1.52072 1.01965 1.22501 1.03210 0.90327 0.91329 1.21186 0.89458 1.00065 1.04646 1.19790 0.98655 0.91428 1.02214 1.17107 0.88704 0.85031 0.98044 1.91524 1.76398 1.58759 1.83548 1.21112 0.93544 1.01206 1.04820 1.17270 0.78780 0.94266 0.99920 1.91515 1.33758 1.95557 1.90893 1.21268 0.96414 0.97134 1.03769 1.20137 0.92684 0.97368 0.95787 1.21181 0.87888 0.91644 1.03258 0.87766 0.92499 0.90857 0.90565 0.91703 0.90040 0.95974 0.98284 0.92404 0.86759 0.88801 0.88613 0.87235 0.81483 0.84933 0.91644 0.87126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 8.76 71.98 0.63 -2.19 16 2 C 0.07 1.90 1.09 44.17 0.05 1.95 16 3 H 0.08 1.94 3.43 -2.39 -0.01 1.93 16 4 C 0.50 20.60 5.72 87.66 0.50 21.10 16 5 O -0.58 -29.72 14.98 -3.04 -0.05 -29.77 16 6 N -0.61 -25.91 2.86 -851.13 -2.43 -28.34 16 7 C 0.08 2.37 10.08 127.77 1.29 3.66 16 8 C 0.26 14.20 5.16 85.64 0.44 14.64 16 9 C -0.54 -31.13 9.39 25.60 0.24 -30.89 16 10 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 11 C 0.01 0.68 5.46 84.65 0.46 1.14 16 12 N -0.93 -56.30 13.29 21.45 0.28 -56.01 16 13 Si 0.96 45.47 29.54 68.60 2.03 47.50 16 14 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 15 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 16 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 17 N -0.51 -13.42 4.61 -880.29 -4.06 -17.48 16 18 C 0.05 0.85 5.44 86.22 0.47 1.32 16 19 C -0.12 -1.71 4.76 29.82 0.14 -1.57 16 20 C -0.12 -2.49 5.06 -19.80 -0.10 -2.59 16 21 C 0.13 2.66 7.23 22.43 0.16 2.82 16 22 F -0.12 -2.30 16.56 44.97 0.74 -1.56 16 23 C -0.19 -3.98 10.01 22.32 0.22 -3.76 16 24 C 0.12 3.02 7.30 22.32 0.16 3.18 16 25 F -0.14 -3.83 17.27 44.97 0.78 -3.06 16 26 C -0.17 -4.62 9.62 22.38 0.22 -4.40 16 27 C -0.06 -1.48 5.31 -19.87 -0.11 -1.58 16 28 C 0.09 2.57 5.22 85.59 0.45 3.02 16 29 H 0.10 1.34 6.07 -2.39 -0.01 1.32 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.42 7.96 -2.39 -0.02 1.40 16 32 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.06 2.10 8.07 -2.39 -0.02 2.08 16 34 H 0.08 2.02 5.83 -2.38 -0.01 2.01 16 35 H 0.02 1.22 8.07 -2.39 -0.02 1.20 16 36 H 0.00 -0.06 7.42 -2.39 -0.02 -0.08 16 37 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 38 H 0.11 1.34 6.74 -2.39 -0.02 1.33 16 39 H 0.09 1.35 8.05 -2.39 -0.02 1.33 16 40 H 0.10 1.28 6.30 -2.39 -0.02 1.27 16 41 H 0.11 1.19 7.93 -2.39 -0.02 1.17 16 42 H 0.17 2.78 8.06 -2.91 -0.02 2.75 16 43 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 44 H 0.07 2.55 5.93 -2.39 -0.01 2.54 16 45 H 0.11 2.82 8.14 -2.39 -0.02 2.81 16 Total: -1.00 -74.50 364.50 3.55 -70.95 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 1.03 Total: 11.91 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 5.23 Total: 5.86 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -6.21 Total: -101.83 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -0.05 Total: -29.77 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 1.52 Total: -4.62 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -74.50 3.55 -70.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120444310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.932 kcal (2) G-P(sol) polarization free energy of solvation -74.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds