Wall clock time and date at job start Tue Mar 31 2020 21:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47010 * 2 1 4 4 C 1.50698 * 109.47301 * 240.00129 * 2 1 3 5 5 O 1.21288 * 119.99852 * 268.51485 * 4 2 1 6 6 N 1.34778 * 120.00452 * 88.51210 * 4 2 1 7 7 C 1.46501 * 119.99309 * 354.91530 * 6 4 2 8 8 C 1.46493 * 120.00289 * 174.90880 * 6 4 2 9 9 C 1.50702 * 109.46832 * 90.00543 * 8 6 4 10 10 H 1.07997 * 120.00118 * 359.97438 * 9 8 6 11 11 C 1.37888 * 119.99752 * 179.97438 * 9 8 6 12 12 N 1.31509 * 119.99918 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99704 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46966 * 90.00195 * 13 11 9 15 15 H 1.48496 * 109.46970 * 209.99999 * 13 11 9 16 16 H 1.48503 * 109.47320 * 330.00281 * 13 11 9 17 17 N 1.46901 * 109.47193 * 120.00073 * 2 1 3 18 18 C 1.47157 * 110.99815 * 299.62428 * 17 2 1 19 19 C 1.52896 * 108.49472 * 165.32394 * 18 17 2 20 20 C 1.50723 * 109.95035 * 50.44745 * 19 18 17 21 21 C 1.38920 * 118.45924 * 163.22380 * 20 19 18 22 22 F 1.35106 * 119.83543 * 359.60270 * 21 20 19 23 23 C 1.38213 * 120.33126 * 179.57549 * 21 20 19 24 24 C 1.38442 * 119.77389 * 0.02562 * 23 21 20 25 25 F 1.35096 * 120.08173 * 180.08995 * 24 23 21 26 26 C 1.38258 * 119.84023 * 0.09264 * 24 23 21 27 27 C 1.37808 * 121.66520 * 342.98949 * 20 19 18 28 28 C 1.46625 * 111.00030 * 176.61572 * 17 2 1 29 29 H 1.08996 * 109.47163 * 307.77219 * 1 2 3 30 30 H 1.09005 * 109.46968 * 67.78027 * 1 2 3 31 31 H 1.08999 * 109.46553 * 187.77414 * 1 2 3 32 32 H 1.08998 * 109.47634 * 91.47563 * 7 6 4 33 33 H 1.09005 * 109.46706 * 211.47390 * 7 6 4 34 34 H 1.08993 * 109.47637 * 331.46878 * 7 6 4 35 35 H 1.09003 * 109.47357 * 209.99975 * 8 6 4 36 36 H 1.08992 * 109.47711 * 330.00339 * 8 6 4 37 37 H 0.97005 * 119.99675 * 180.02562 * 12 11 9 38 38 H 1.08997 * 109.63462 * 285.02902 * 18 17 2 39 39 H 1.08999 * 109.63015 * 45.62340 * 18 17 2 40 40 H 1.09002 * 109.39260 * 290.29882 * 19 18 17 41 41 H 1.08998 * 109.30962 * 170.54560 * 19 18 17 42 42 H 1.08002 * 120.11464 * 180.02562 * 23 21 20 43 43 H 1.07999 * 119.78704 * 179.97438 * 26 24 23 44 44 H 1.09002 * 109.26754 * 296.18122 * 28 17 2 45 45 H 1.08999 * 109.26660 * 55.68335 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.2602 -1.9011 -1.1927 6 7 2.2285 -0.0227 -2.3729 7 6 1.8488 1.3901 -2.4516 8 6 2.8215 -0.6877 -3.5357 9 6 1.7289 -1.2891 -4.3816 10 1 0.6961 -1.1865 -4.0828 11 6 2.0477 -1.9703 -5.5373 12 7 3.3052 -2.0948 -5.9015 13 14 0.6934 -2.7163 -6.5856 14 1 0.2417 -1.7218 -7.5917 15 1 1.2123 -3.9221 -7.2797 16 1 -0.4503 -3.0978 -5.7186 17 7 2.0197 -0.6925 1.1994 18 6 1.5552 -0.0200 2.4232 19 6 1.7718 -0.9632 3.6069 20 6 3.1862 -1.4841 3.5973 21 6 3.6871 -2.0608 4.7576 22 9 2.9104 -2.1355 5.8606 23 6 4.9760 -2.5590 4.7892 24 6 5.7708 -2.4818 3.6583 25 9 7.0308 -2.9684 3.6817 26 6 5.2719 -1.9054 2.5049 27 6 3.9789 -1.4043 2.4729 28 6 3.4832 -0.7824 1.1936 29 1 -0.3633 0.6294 0.8123 30 1 -0.3633 0.3886 -0.9514 31 1 -0.3632 -1.0182 0.1390 32 1 2.6999 2.0113 -2.1729 33 1 1.5436 1.6280 -3.4707 34 1 1.0202 1.5822 -1.7701 35 1 3.3787 0.0400 -4.1256 36 1 3.4956 -1.4754 -3.1992 37 1 3.5295 -2.5737 -6.7147 38 1 2.1249 0.8965 2.5761 39 1 0.4949 0.2154 2.3317 40 1 1.0774 -1.8002 3.5346 41 1 1.5915 -0.4227 4.5361 42 1 5.3617 -3.0070 5.6931 43 1 5.8928 -1.8453 1.6233 44 1 3.8026 -1.3933 0.3492 45 1 3.9046 0.2178 1.0936 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120444434.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:43 Heat of formation + Delta-G solvation = -86.120537 kcal Electronic energy + Delta-G solvation = -29740.146627 eV Core-core repulsion = 25393.840770 eV Total energy + Delta-G solvation = -4346.305857 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.20866 -49.14309 -40.45876 -39.11266 -36.96886 -34.82066 -33.40594 -32.59855 -32.28004 -30.02213 -29.14671 -27.80309 -25.99952 -25.16356 -24.43259 -23.26266 -22.57827 -21.71870 -20.06631 -18.48802 -17.98715 -17.46851 -16.76870 -16.52927 -16.29270 -16.11112 -15.97287 -15.55357 -15.45223 -15.17013 -14.81800 -14.58869 -14.51655 -14.10231 -13.93026 -13.73764 -13.22634 -13.13358 -12.69849 -12.59549 -12.44849 -12.27215 -12.13415 -12.03649 -11.86390 -11.66711 -11.47722 -11.39566 -11.22834 -11.14846 -10.88961 -10.81396 -10.59505 -10.16383 -9.63990 -9.10958 -8.87403 -8.72747 -8.44900 -8.31676 -7.67315 -6.05674 -4.10117 0.76279 0.78737 3.10752 3.27835 3.29705 3.36670 3.40465 3.51671 3.65010 3.98824 4.18507 4.32208 4.39048 4.44117 4.65790 4.73138 4.89651 5.02356 5.08117 5.12855 5.19735 5.28953 5.30099 5.32294 5.40510 5.51189 5.56798 5.62383 5.69303 5.71545 5.77557 5.80242 5.85141 5.86066 5.90702 6.12460 6.18100 6.29342 6.57070 6.83403 6.90565 7.07034 7.38835 7.50910 7.90634 8.21394 8.37132 8.88840 9.06916 9.55070 11.02419 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014968 B = 0.002919 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.229196 B = 9590.761020 C =10584.190967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.064 3.936 3 H 0.058 0.942 4 C 0.506 3.494 5 O -0.518 6.518 6 N -0.604 5.604 7 C 0.080 3.920 8 C 0.248 3.752 9 C -0.525 4.525 10 H 0.057 0.943 11 C 0.061 3.939 12 N -0.895 5.895 13 Si 0.898 3.102 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.274 1.274 17 N -0.509 5.509 18 C 0.048 3.952 19 C -0.071 4.071 20 C -0.112 4.112 21 C 0.126 3.874 22 F -0.131 7.131 23 C -0.196 4.196 24 C 0.127 3.873 25 F -0.132 7.132 26 C -0.157 4.157 27 C -0.008 4.008 28 C 0.085 3.915 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.032 0.968 36 H 0.042 0.958 37 H 0.263 0.737 38 H 0.040 0.960 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.146 0.854 43 H 0.145 0.855 44 H 0.113 0.887 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.349 7.859 20.688 22.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.047 4.047 3 H 0.076 0.924 4 C 0.291 3.709 5 O -0.393 6.393 6 N -0.337 5.337 7 C -0.064 4.064 8 C 0.128 3.872 9 C -0.563 4.563 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.534 5.534 13 Si 0.725 3.275 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.198 1.198 17 N -0.234 5.234 18 C -0.080 4.080 19 C -0.108 4.108 20 C -0.113 4.113 21 C 0.107 3.893 22 F -0.110 7.110 23 C -0.216 4.216 24 C 0.107 3.893 25 F -0.111 7.111 26 C -0.176 4.176 27 C -0.009 4.009 28 C -0.043 4.043 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.164 0.836 43 H 0.163 0.837 44 H 0.131 0.869 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.278 6.636 20.564 21.610 hybrid contribution -0.154 0.263 -0.481 0.569 sum -0.433 6.899 20.083 21.239 Atomic orbital electron populations 1.21798 0.92039 1.03745 1.02211 1.21721 0.97521 0.95726 0.89765 0.92391 1.20057 0.79288 0.87653 0.83907 1.90694 1.50203 1.14301 1.84093 1.48195 1.61396 1.10442 1.13640 1.21691 0.98815 0.82757 1.03110 1.19271 0.93894 0.92928 0.81058 1.21418 0.93422 1.34778 1.06731 0.92452 1.24936 0.95620 0.95955 0.97610 1.69926 1.16637 1.42360 1.24526 0.86503 0.82020 0.78775 0.80173 1.20685 1.21086 1.19850 1.62033 1.09067 1.51435 1.00826 1.22266 1.01629 0.94817 0.89294 1.20462 0.91993 1.00024 0.98366 1.19636 0.97891 1.01984 0.91784 1.17165 0.88645 1.00308 0.83225 1.91504 1.74179 1.94181 1.51105 1.20903 0.93902 1.06790 0.99954 1.17083 0.80062 0.97878 0.94232 1.91530 1.36948 1.85573 1.97003 1.21128 0.96743 1.01557 0.98208 1.19241 0.91974 0.95536 0.94118 1.21152 0.87900 0.99789 0.95427 0.91931 0.91192 0.90633 0.93907 0.90643 0.92354 0.95027 0.94026 0.92720 0.94140 0.89106 0.89067 0.89961 0.83586 0.83739 0.86888 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.48 37.16 0.31 -1.40 16 2 C 0.06 0.91 1.60 -68.86 -0.11 0.79 16 3 H 0.06 0.70 6.93 -51.93 -0.36 0.34 16 4 C 0.51 9.96 5.83 -10.99 -0.06 9.90 16 5 O -0.52 -12.60 14.94 5.55 0.08 -12.51 16 6 N -0.60 -12.19 2.86 -182.96 -0.52 -12.71 16 7 C 0.08 1.20 9.80 59.85 0.59 1.78 16 8 C 0.25 6.30 5.13 -5.20 -0.03 6.27 16 9 C -0.52 -14.66 9.39 -34.44 -0.32 -14.98 16 10 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 11 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 12 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 13 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 17 N -0.51 -6.94 4.29 -229.60 -0.98 -7.92 16 18 C 0.05 0.48 5.42 -3.74 -0.02 0.46 16 19 C -0.07 -0.71 5.60 -27.93 -0.16 -0.87 16 20 C -0.11 -1.30 5.78 -104.52 -0.60 -1.91 16 21 C 0.13 1.41 7.23 -39.34 -0.28 1.13 16 22 F -0.13 -1.44 16.57 2.25 0.04 -1.40 16 23 C -0.20 -2.09 10.01 -39.52 -0.40 -2.49 16 24 C 0.13 1.47 7.30 -39.50 -0.29 1.19 16 25 F -0.13 -1.58 17.27 2.25 0.04 -1.54 16 26 C -0.16 -1.88 9.63 -39.40 -0.38 -2.26 16 27 C -0.01 -0.10 5.79 -104.64 -0.61 -0.71 16 28 C 0.08 1.16 4.74 -5.16 -0.02 1.13 16 29 H 0.06 0.56 6.54 -51.93 -0.34 0.22 16 30 H 0.07 0.86 7.01 -51.93 -0.36 0.50 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 34 H 0.06 0.70 5.36 -51.93 -0.28 0.42 16 35 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 36 H 0.04 1.19 7.50 -51.93 -0.39 0.80 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.04 0.37 8.05 -51.93 -0.42 -0.05 16 39 H 0.09 0.77 5.87 -51.93 -0.30 0.47 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.08 0.67 7.94 -51.93 -0.41 0.26 16 42 H 0.15 1.27 8.06 -52.49 -0.42 0.84 16 43 H 0.14 1.60 8.06 -52.49 -0.42 1.17 16 44 H 0.11 1.90 6.23 -51.93 -0.32 1.57 16 45 H 0.05 0.65 8.13 -51.93 -0.42 0.22 16 LS Contribution 369.61 15.07 5.57 5.57 Total: -1.00 -32.59 369.61 -8.65 -41.24 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -6.11 Total: -1.49 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -2.48 Total: -0.34 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: -0.77 Total: -46.26 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.08 Total: -12.51 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.08 Total: -2.94 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.59 -8.65 -41.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120444434.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.876 kcal (2) G-P(sol) polarization free energy of solvation -32.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds