Wall clock time and date at job start Tue Mar 31 2020 21:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47010 * 2 1 4 4 C 1.50698 * 109.47301 * 240.00129 * 2 1 3 5 5 O 1.21288 * 119.99852 * 268.51485 * 4 2 1 6 6 N 1.34778 * 120.00452 * 88.51210 * 4 2 1 7 7 C 1.46501 * 119.99309 * 354.91530 * 6 4 2 8 8 C 1.46493 * 120.00289 * 174.90880 * 6 4 2 9 9 C 1.50702 * 109.46832 * 90.00543 * 8 6 4 10 10 H 1.07997 * 120.00118 * 359.97438 * 9 8 6 11 11 C 1.37888 * 119.99752 * 179.97438 * 9 8 6 12 12 N 1.31509 * 119.99918 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99704 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46966 * 90.00195 * 13 11 9 15 15 H 1.48496 * 109.46970 * 209.99999 * 13 11 9 16 16 H 1.48503 * 109.47320 * 330.00281 * 13 11 9 17 17 N 1.46901 * 109.47193 * 120.00073 * 2 1 3 18 18 C 1.47157 * 110.99815 * 299.62428 * 17 2 1 19 19 C 1.52896 * 108.49472 * 165.32394 * 18 17 2 20 20 C 1.50723 * 109.95035 * 50.44745 * 19 18 17 21 21 C 1.38920 * 118.45924 * 163.22380 * 20 19 18 22 22 F 1.35106 * 119.83543 * 359.60270 * 21 20 19 23 23 C 1.38213 * 120.33126 * 179.57549 * 21 20 19 24 24 C 1.38442 * 119.77389 * 0.02562 * 23 21 20 25 25 F 1.35096 * 120.08173 * 180.08995 * 24 23 21 26 26 C 1.38258 * 119.84023 * 0.09264 * 24 23 21 27 27 C 1.37808 * 121.66520 * 342.98949 * 20 19 18 28 28 C 1.46625 * 111.00030 * 176.61572 * 17 2 1 29 29 H 1.08996 * 109.47163 * 307.77219 * 1 2 3 30 30 H 1.09005 * 109.46968 * 67.78027 * 1 2 3 31 31 H 1.08999 * 109.46553 * 187.77414 * 1 2 3 32 32 H 1.08998 * 109.47634 * 91.47563 * 7 6 4 33 33 H 1.09005 * 109.46706 * 211.47390 * 7 6 4 34 34 H 1.08993 * 109.47637 * 331.46878 * 7 6 4 35 35 H 1.09003 * 109.47357 * 209.99975 * 8 6 4 36 36 H 1.08992 * 109.47711 * 330.00339 * 8 6 4 37 37 H 0.97005 * 119.99675 * 180.02562 * 12 11 9 38 38 H 1.08997 * 109.63462 * 285.02902 * 18 17 2 39 39 H 1.08999 * 109.63015 * 45.62340 * 18 17 2 40 40 H 1.09002 * 109.39260 * 290.29882 * 19 18 17 41 41 H 1.08998 * 109.30962 * 170.54560 * 19 18 17 42 42 H 1.08002 * 120.11464 * 180.02562 * 23 21 20 43 43 H 1.07999 * 119.78704 * 179.97438 * 26 24 23 44 44 H 1.09002 * 109.26754 * 296.18122 * 28 17 2 45 45 H 1.08999 * 109.26660 * 55.68335 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.2602 -1.9011 -1.1927 6 7 2.2285 -0.0227 -2.3729 7 6 1.8488 1.3901 -2.4516 8 6 2.8215 -0.6877 -3.5357 9 6 1.7289 -1.2891 -4.3816 10 1 0.6961 -1.1865 -4.0828 11 6 2.0477 -1.9703 -5.5373 12 7 3.3052 -2.0948 -5.9015 13 14 0.6934 -2.7163 -6.5856 14 1 0.2417 -1.7218 -7.5917 15 1 1.2123 -3.9221 -7.2797 16 1 -0.4503 -3.0978 -5.7186 17 7 2.0197 -0.6925 1.1994 18 6 1.5552 -0.0200 2.4232 19 6 1.7718 -0.9632 3.6069 20 6 3.1862 -1.4841 3.5973 21 6 3.6871 -2.0608 4.7576 22 9 2.9104 -2.1355 5.8606 23 6 4.9760 -2.5590 4.7892 24 6 5.7708 -2.4818 3.6583 25 9 7.0308 -2.9684 3.6817 26 6 5.2719 -1.9054 2.5049 27 6 3.9789 -1.4043 2.4729 28 6 3.4832 -0.7824 1.1936 29 1 -0.3633 0.6294 0.8123 30 1 -0.3633 0.3886 -0.9514 31 1 -0.3632 -1.0182 0.1390 32 1 2.6999 2.0113 -2.1729 33 1 1.5436 1.6280 -3.4707 34 1 1.0202 1.5822 -1.7701 35 1 3.3787 0.0400 -4.1256 36 1 3.4956 -1.4754 -3.1992 37 1 3.5295 -2.5737 -6.7147 38 1 2.1249 0.8965 2.5761 39 1 0.4949 0.2154 2.3317 40 1 1.0774 -1.8002 3.5346 41 1 1.5915 -0.4227 4.5361 42 1 5.3617 -3.0070 5.6931 43 1 5.8928 -1.8453 1.6233 44 1 3.8026 -1.3933 0.3492 45 1 3.9046 0.2178 1.0936 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120444434.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:42 Heat of formation + Delta-G solvation = -106.333099 kcal Electronic energy + Delta-G solvation = -29741.023109 eV Core-core repulsion = 25393.840770 eV Total energy + Delta-G solvation = -4347.182339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.08405 -50.05989 -41.54775 -40.39521 -38.07085 -36.51823 -34.85565 -34.14733 -33.28368 -31.09675 -30.05893 -29.59523 -27.40194 -26.20001 -25.77996 -24.61587 -23.51799 -23.02603 -21.00473 -19.88938 -18.90882 -18.65898 -18.44137 -18.07651 -17.25908 -17.19398 -16.92806 -16.81826 -16.45167 -16.31642 -16.29185 -15.83098 -15.50586 -15.32887 -15.25229 -14.84007 -14.41738 -14.16237 -14.11603 -13.77920 -13.63078 -13.46378 -13.42099 -13.14526 -13.08417 -13.02741 -12.83727 -12.69907 -12.53004 -12.38398 -12.33303 -12.19444 -12.15127 -11.70716 -11.65360 -10.63656 -10.41947 -10.01211 -9.62076 -9.40601 -9.29362 -8.21777 -6.36049 -0.14512 -0.11698 1.36129 1.39493 1.49575 1.82756 2.18484 2.23102 2.41438 2.69433 2.83746 3.07840 3.27938 3.39893 3.54777 3.67236 3.79471 3.87830 4.06786 4.10828 4.21504 4.29124 4.36385 4.39863 4.44884 4.53472 4.63557 4.70432 4.72163 4.75599 4.78377 4.88053 4.93614 4.96115 5.00202 5.03645 5.09865 5.22768 5.25786 5.31806 5.57282 5.67445 5.82574 5.90719 6.03179 6.07543 6.71871 6.82473 7.30138 7.53543 8.84956 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014968 B = 0.002919 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.229196 B = 9590.761020 C =10584.190967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.078 3.922 3 H 0.090 0.910 4 C 0.498 3.502 5 O -0.577 6.577 6 N -0.612 5.612 7 C 0.075 3.925 8 C 0.263 3.737 9 C -0.539 4.539 10 H 0.053 0.947 11 C 0.007 3.993 12 N -0.929 5.929 13 Si 0.966 3.034 14 H -0.262 1.262 15 H -0.283 1.283 16 H -0.273 1.273 17 N -0.530 5.530 18 C 0.049 3.951 19 C -0.071 4.071 20 C -0.113 4.113 21 C 0.123 3.877 22 F -0.127 7.127 23 C -0.188 4.188 24 C 0.118 3.882 25 F -0.136 7.136 26 C -0.165 4.165 27 C -0.022 4.022 28 C 0.091 3.909 29 H 0.107 0.893 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.023 0.977 36 H -0.005 1.005 37 H 0.266 0.734 38 H 0.058 0.942 39 H 0.113 0.887 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.168 0.832 43 H 0.142 0.858 44 H 0.070 0.930 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.414 9.763 22.510 24.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.033 4.033 3 H 0.108 0.892 4 C 0.286 3.714 5 O -0.456 6.456 6 N -0.344 5.344 7 C -0.067 4.067 8 C 0.141 3.859 9 C -0.578 4.578 10 H 0.071 0.929 11 C -0.192 4.192 12 N -0.569 5.569 13 Si 0.790 3.210 14 H -0.187 1.187 15 H -0.208 1.208 16 H -0.198 1.198 17 N -0.256 5.256 18 C -0.077 4.077 19 C -0.108 4.108 20 C -0.114 4.114 21 C 0.104 3.896 22 F -0.106 7.106 23 C -0.207 4.207 24 C 0.098 3.902 25 F -0.115 7.115 26 C -0.185 4.185 27 C -0.023 4.023 28 C -0.037 4.037 29 H 0.125 0.875 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.113 0.887 35 H 0.041 0.959 36 H 0.013 0.987 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.132 0.868 40 H 0.104 0.896 41 H 0.125 0.875 42 H 0.185 0.815 43 H 0.160 0.840 44 H 0.088 0.912 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.362 8.598 22.406 24.115 hybrid contribution 0.541 -0.344 -0.997 1.185 sum -1.821 8.254 21.410 23.018 Atomic orbital electron populations 1.21834 0.90156 1.03434 1.03988 1.21653 0.98646 0.96064 0.86967 0.89222 1.21172 0.77819 0.87245 0.85173 1.90658 1.52559 1.17258 1.85167 1.48206 1.61145 1.12565 1.12472 1.21990 1.01246 0.79672 1.03829 1.18698 0.92879 0.91756 0.82538 1.21703 0.93621 1.35167 1.07305 0.92921 1.25848 0.98021 0.96322 0.99016 1.70046 1.18625 1.43096 1.25131 0.85444 0.78816 0.78196 0.78540 1.18711 1.20803 1.19819 1.61961 1.08803 1.52892 1.01949 1.22409 1.03049 0.95031 0.87219 1.20559 0.90504 1.00173 0.99589 1.19857 0.98667 1.01500 0.91419 1.17160 0.88802 1.00386 0.83252 1.91515 1.74065 1.94158 1.50813 1.21109 0.93561 1.05776 1.00247 1.17133 0.80152 0.98358 0.94514 1.91518 1.37213 1.85684 1.97035 1.21216 0.96955 1.01779 0.98528 1.19192 0.92323 0.96593 0.94168 1.20937 0.88507 0.99764 0.94455 0.87466 0.91237 0.92844 0.91232 0.91495 0.88672 0.95887 0.98701 0.92477 0.92392 0.86849 0.89564 0.87460 0.81466 0.83967 0.91193 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.48 71.98 0.61 -2.31 16 2 C 0.08 2.04 1.60 44.17 0.07 2.11 16 3 H 0.09 1.80 6.93 -2.38 -0.02 1.78 16 4 C 0.50 19.98 5.83 87.66 0.51 20.50 16 5 O -0.58 -29.79 14.94 -3.05 -0.05 -29.83 16 6 N -0.61 -25.09 2.86 -851.15 -2.43 -27.52 16 7 C 0.07 2.08 9.80 127.77 1.25 3.34 16 8 C 0.26 14.05 5.13 85.63 0.44 14.49 16 9 C -0.54 -31.06 9.39 25.60 0.24 -30.82 16 10 H 0.05 3.01 7.81 -2.91 -0.02 2.98 16 11 C 0.01 0.39 5.46 84.66 0.46 0.85 16 12 N -0.93 -56.38 13.29 21.45 0.28 -56.09 16 13 Si 0.97 45.11 29.54 68.60 2.03 47.13 16 14 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 15 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 16 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 17 N -0.53 -13.72 4.29 -880.31 -3.78 -17.50 16 18 C 0.05 0.82 5.42 86.22 0.47 1.29 16 19 C -0.07 -1.22 5.60 29.82 0.17 -1.05 16 20 C -0.11 -2.47 5.78 -19.80 -0.11 -2.59 16 21 C 0.12 2.55 7.23 22.43 0.16 2.71 16 22 F -0.13 -2.48 16.57 44.97 0.74 -1.73 16 23 C -0.19 -3.75 10.01 22.31 0.22 -3.53 16 24 C 0.12 2.71 7.30 22.32 0.16 2.88 16 25 F -0.14 -3.25 17.27 44.97 0.78 -2.47 16 26 C -0.17 -4.09 9.63 22.39 0.22 -3.87 16 27 C -0.02 -0.55 5.79 -19.87 -0.12 -0.67 16 28 C 0.09 2.51 4.74 85.59 0.41 2.92 16 29 H 0.11 1.35 6.54 -2.39 -0.02 1.33 16 30 H 0.07 1.50 7.01 -2.38 -0.02 1.48 16 31 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.07 1.99 8.08 -2.38 -0.02 1.97 16 34 H 0.09 1.94 5.36 -2.39 -0.01 1.93 16 35 H 0.02 1.25 8.07 -2.39 -0.02 1.23 16 36 H -0.01 -0.32 7.50 -2.39 -0.02 -0.34 16 37 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 38 H 0.06 0.80 8.05 -2.39 -0.02 0.78 16 39 H 0.11 1.36 5.87 -2.39 -0.01 1.35 16 40 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.11 1.33 7.94 -2.39 -0.02 1.31 16 42 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 43 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 44 H 0.07 2.54 6.23 -2.39 -0.01 2.53 16 45 H 0.07 1.58 8.13 -2.39 -0.02 1.57 16 Total: -1.00 -75.71 369.61 3.76 -71.95 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: 1.02 Total: 9.83 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 5.16 Total: 6.24 kcal Atomic # 7 Polarization: -95.20 SS G_CDS: -5.92 Total: -101.12 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.05 Total: -29.83 kcal Atomic # 9 Polarization: -5.72 SS G_CDS: 1.52 Total: -4.20 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -75.71 3.76 -71.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120444434.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.385 kcal (2) G-P(sol) polarization free energy of solvation -75.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds