Wall clock time and date at job start Tue Mar 31 2020 21:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46490 * 109.46999 * 2 1 4 4 C 1.46500 * 120.00165 * 269.99759 * 3 2 1 5 5 C 1.50704 * 109.47285 * 270.00150 * 4 3 2 6 6 H 1.07994 * 119.99827 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99652 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00721 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99541 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47471 * 60.00256 * 9 7 5 11 11 H 1.48506 * 109.47335 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47450 * 300.00136 * 9 7 5 13 13 C 1.34774 * 120.00211 * 90.00414 * 3 2 1 14 14 O 1.21276 * 120.00523 * 180.02562 * 13 3 2 15 15 C 1.50699 * 119.99793 * 359.97438 * 13 3 2 16 16 N 1.46902 * 109.47399 * 180.02562 * 15 13 3 17 17 C 1.46929 * 111.00211 * 171.02014 * 16 15 13 18 18 C 1.52895 * 108.62420 * 52.10149 * 17 16 15 19 19 C 1.50726 * 109.88779 * 50.40116 * 18 17 16 20 20 C 1.38920 * 118.46480 * 163.19801 * 19 18 17 21 21 F 1.35097 * 119.83601 * 359.84169 * 20 19 18 22 22 C 1.38212 * 120.32891 * 179.82077 * 20 19 18 23 23 C 1.38446 * 119.77732 * 359.97438 * 22 20 19 24 24 F 1.35100 * 120.08416 * 180.09274 * 23 22 20 25 25 C 1.38244 * 119.83747 * 0.06910 * 23 22 20 26 26 C 1.37817 * 121.65924 * 343.13793 * 19 18 17 27 27 C 1.46628 * 110.99919 * 293.95779 * 16 15 13 28 28 H 1.09002 * 109.47035 * 60.00110 * 1 2 3 29 29 H 1.09001 * 109.47136 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46827 * 300.00093 * 1 2 3 31 31 H 1.08999 * 109.46827 * 239.99907 * 2 1 3 32 32 H 1.08998 * 109.46857 * 120.00359 * 2 1 3 33 33 H 1.09001 * 109.47267 * 30.00675 * 4 3 2 34 34 H 1.09002 * 109.47440 * 150.00108 * 4 3 2 35 35 H 0.97000 * 120.00659 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.47314 * 60.00108 * 15 13 3 37 37 H 1.08998 * 109.47407 * 300.00299 * 15 13 3 38 38 H 1.08997 * 109.50606 * 292.39790 * 17 16 15 39 39 H 1.09003 * 109.64043 * 171.88127 * 17 16 15 40 40 H 1.09002 * 109.38776 * 290.29909 * 18 17 16 41 41 H 1.08996 * 109.38478 * 170.50459 * 18 17 16 42 42 H 1.08005 * 120.11255 * 180.02562 * 22 20 19 43 43 H 1.08010 * 119.79513 * 179.97438 * 25 23 22 44 44 H 1.08999 * 109.27558 * 168.88640 * 27 16 15 45 45 H 1.09003 * 109.27319 * 49.40510 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2309 -1.0958 7 6 4.1491 2.3896 -2.8779 8 7 3.3492 3.1257 -3.6181 9 14 5.9132 2.0955 -3.4175 10 1 6.1403 0.6388 -3.5948 11 1 6.1608 2.7957 -4.7035 12 1 6.8411 2.6188 -2.3829 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9914 1.3062 2.4723 16 7 2.3092 2.2063 3.5889 17 6 1.8777 1.6295 4.8694 18 6 2.4472 0.2153 4.9846 19 6 3.9266 0.2333 4.6968 20 6 4.6904 -0.8594 5.0872 21 9 4.1014 -1.9024 5.7121 22 6 6.0499 -0.8851 4.8392 23 6 6.6521 0.1839 4.1979 24 9 7.9801 0.1645 3.9506 25 6 5.8910 1.2711 3.8107 26 6 4.5270 1.2986 4.0611 27 6 3.7433 2.5097 3.6275 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.5817 1.6877 -2.0284 34 1 2.0956 3.1410 -1.1384 35 1 3.6752 3.5162 -4.4440 36 1 2.6213 0.4185 2.5302 37 1 0.9434 1.0124 2.5299 38 1 0.7889 1.5897 4.9022 39 1 2.2494 2.2420 5.6910 40 1 1.9470 -0.4357 4.2675 41 1 2.2794 -0.1613 5.9935 42 1 6.6403 -1.7366 5.1439 43 1 6.3616 2.1049 3.3108 44 1 3.9201 3.3233 4.3310 45 1 4.0733 2.8152 2.6346 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120514552.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:15 Heat of formation + Delta-G solvation = -89.644163 kcal Electronic energy + Delta-G solvation = -30389.655476 eV Core-core repulsion = 26043.196823 eV Total energy + Delta-G solvation = -4346.458653 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.24110 -49.12894 -40.72569 -38.88169 -36.95409 -35.25372 -32.84619 -32.58264 -31.54893 -30.11079 -29.17473 -28.58071 -26.57846 -24.54851 -23.48941 -23.02289 -22.62680 -22.37229 -20.03838 -18.44316 -17.91679 -17.46839 -16.75427 -16.39498 -16.33342 -16.11374 -15.97762 -15.50304 -15.46223 -15.17220 -14.67007 -14.56338 -14.34225 -14.16483 -14.08147 -13.64995 -13.36246 -13.12589 -12.94221 -12.73000 -12.38577 -12.31926 -12.00991 -11.97117 -11.78675 -11.64841 -11.40813 -11.26964 -11.18374 -11.02103 -10.92239 -10.71406 -10.52550 -10.12392 -9.65198 -9.06408 -8.89845 -8.77371 -8.43499 -8.31666 -7.65397 -6.04502 -4.09347 0.73463 0.76904 3.09231 3.31102 3.35751 3.36699 3.43451 3.56944 3.65652 4.05704 4.23952 4.32784 4.35901 4.44810 4.61846 4.70990 4.86762 5.00986 5.07663 5.19182 5.25340 5.30125 5.37731 5.42748 5.50281 5.56344 5.60369 5.63169 5.67724 5.68764 5.76622 5.81045 5.83368 5.87578 6.01285 6.20926 6.23849 6.46689 6.57280 6.84567 6.95898 7.11852 7.45567 7.55428 7.91978 8.23486 8.43140 8.90064 9.11181 9.55904 11.03421 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010159 B = 0.004250 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.581285 B = 6586.238949 C = 8105.987657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.597 5.597 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.055 0.945 7 C 0.063 3.937 8 N -0.894 5.894 9 Si 0.895 3.105 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.507 3.493 14 O -0.526 6.526 15 C 0.028 3.972 16 N -0.503 5.503 17 C 0.053 3.947 18 C -0.117 4.117 19 C -0.127 4.127 20 C 0.129 3.871 21 F -0.131 7.131 22 C -0.197 4.197 23 C 0.130 3.870 24 F -0.131 7.131 25 C -0.154 4.154 26 C -0.049 4.049 27 C 0.081 3.919 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.031 0.969 34 H 0.044 0.956 35 H 0.264 0.736 36 H 0.062 0.938 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.146 0.854 43 H 0.146 0.854 44 H 0.099 0.901 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.922 -8.697 18.749 20.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.330 5.330 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.073 0.927 7 C -0.139 4.139 8 N -0.533 5.533 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.293 3.707 14 O -0.402 6.402 15 C -0.103 4.103 16 N -0.223 5.223 17 C -0.075 4.075 18 C -0.155 4.155 19 C -0.129 4.129 20 C 0.110 3.890 21 F -0.110 7.110 22 C -0.217 4.217 23 C 0.110 3.890 24 F -0.110 7.110 25 C -0.173 4.173 26 C -0.051 4.051 27 C -0.047 4.047 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.117 0.883 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.164 0.836 43 H 0.164 0.836 44 H 0.117 0.883 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.978 -7.544 18.471 20.050 hybrid contribution 1.727 -1.465 -0.227 2.276 sum -0.251 -9.009 18.244 20.349 Atomic orbital electron populations 1.22224 0.96723 1.01381 1.02410 1.21404 0.93563 0.84349 1.02516 1.48249 1.63909 1.13128 1.07715 1.19249 0.96139 0.93665 0.78053 1.21377 0.96930 1.31942 1.06244 0.92675 1.24908 0.97698 0.94930 0.96389 1.69914 1.35681 1.33353 1.14355 0.86609 0.84962 0.78253 0.77894 1.20306 1.21141 1.20195 1.20081 0.78876 0.87029 0.84712 1.90632 1.45164 1.17644 1.86794 1.22197 1.02478 0.94773 0.90819 1.62244 1.15285 1.42934 1.01880 1.22281 1.00951 0.92179 0.92097 1.21093 0.90535 1.00627 1.03264 1.19606 0.96905 0.93889 1.02461 1.17168 0.90184 0.85151 0.96533 1.91501 1.84128 1.55610 1.79731 1.20917 0.94229 1.00858 1.05669 1.17191 0.77941 0.95065 0.98761 1.91537 1.30656 1.96635 1.92134 1.21227 0.93893 0.99049 1.03134 1.20350 0.93678 0.96625 0.94416 1.21524 0.85457 0.92657 1.05104 0.91937 0.92222 0.93033 0.89961 0.92109 0.95101 0.93818 0.92664 0.92000 0.88334 0.89423 0.89820 0.89795 0.89667 0.83579 0.83586 0.88336 0.86037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 10.24 37.16 0.38 -1.80 16 2 C 0.11 1.65 5.93 -4.04 -0.02 1.63 16 3 N -0.60 -12.19 2.46 -175.06 -0.43 -12.62 16 4 C 0.25 6.35 5.16 -5.19 -0.03 6.32 16 5 C -0.53 -14.66 9.39 -34.44 -0.32 -14.99 16 6 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 9 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.51 10.05 7.29 -10.99 -0.08 9.97 16 14 O -0.53 -12.51 13.98 5.56 0.08 -12.43 16 15 C 0.03 0.40 3.00 -4.98 -0.01 0.39 16 16 N -0.50 -6.75 4.76 -237.83 -1.13 -7.89 16 17 C 0.05 0.51 6.01 -3.86 -0.02 0.49 16 18 C -0.12 -1.10 4.83 -27.92 -0.13 -1.23 16 19 C -0.13 -1.46 5.06 -104.51 -0.53 -1.99 16 20 C 0.13 1.48 7.23 -39.34 -0.28 1.20 16 21 F -0.13 -1.47 16.57 2.25 0.04 -1.43 16 22 C -0.20 -2.23 10.01 -39.51 -0.40 -2.63 16 23 C 0.13 1.62 7.30 -39.50 -0.29 1.33 16 24 F -0.13 -1.71 17.27 2.25 0.04 -1.67 16 25 C -0.15 -1.95 9.62 -39.40 -0.38 -2.33 16 26 C -0.05 -0.61 5.20 -104.64 -0.54 -1.16 16 27 C 0.08 1.10 5.18 -5.16 -0.03 1.07 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.62 7.22 -51.93 -0.37 0.25 16 31 H 0.08 1.35 8.07 -51.93 -0.42 0.94 16 32 H 0.06 0.80 6.44 -51.93 -0.33 0.47 16 33 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 34 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.06 0.86 5.13 -51.93 -0.27 0.59 16 37 H 0.10 1.20 7.13 -51.93 -0.37 0.83 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.73 8.05 -51.93 -0.42 0.32 16 40 H 0.08 0.77 7.04 -51.93 -0.37 0.41 16 41 H 0.08 0.69 7.94 -51.93 -0.41 0.28 16 42 H 0.15 1.37 8.06 -52.48 -0.42 0.95 16 43 H 0.15 1.77 8.06 -52.48 -0.42 1.34 16 44 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.12 2.09 5.75 -51.93 -0.30 1.79 16 LS Contribution 369.14 15.07 5.56 5.56 Total: -1.00 -31.96 369.14 -9.07 -41.03 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -6.15 Total: 0.36 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -2.79 Total: -2.04 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: -0.83 Total: -46.11 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.08 Total: -12.43 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.08 Total: -3.10 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.96 -9.07 -41.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120514552.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.619 kcal (2) G-P(sol) polarization free energy of solvation -31.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds