Wall clock time and date at job start Tue Mar 31 2020 20:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.46938 * 59.99973 * 8 6 4 10 10 H 1.48494 * 109.46914 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.46873 * 299.99981 * 8 6 4 12 12 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 13 13 C 1.34773 * 119.99909 * 275.00159 * 12 2 1 14 14 O 1.21699 * 120.00281 * 0.02562 * 13 12 2 15 15 C 1.46663 * 120.00216 * 180.02562 * 13 12 2 16 16 C 1.36541 * 125.99000 * 180.02562 * 15 13 12 17 17 C 1.40368 * 106.70429 * 179.97438 * 16 15 13 18 18 C 1.35122 * 107.11877 * 0.02562 * 17 16 15 19 19 C 1.50700 * 125.62015 * 180.02562 * 18 17 16 20 20 N 1.46501 * 109.47416 * 89.99190 * 19 18 17 21 21 C 1.34776 * 119.99969 * 180.02562 * 20 19 18 22 22 O 1.21515 * 120.00244 * 0.02562 * 21 20 19 23 23 O 1.34632 * 119.99932 * 180.02562 * 21 20 19 24 24 C 1.45202 * 117.00360 * 180.02562 * 23 21 20 25 25 C 1.53004 * 109.46886 * 60.00202 * 24 23 21 26 26 C 1.52992 * 109.47319 * 180.02562 * 24 23 21 27 27 C 1.53004 * 109.47068 * 300.00626 * 24 23 21 28 28 O 1.33935 * 108.76804 * 359.76919 * 18 17 16 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 31 31 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 32 32 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 33 33 H 0.97003 * 119.99825 * 95.00368 * 12 2 1 34 34 H 1.07992 * 126.64541 * 359.97438 * 16 15 13 35 35 H 1.08003 * 126.44142 * 179.97438 * 17 16 15 36 36 H 1.09001 * 109.47683 * 210.00060 * 19 18 17 37 37 H 1.09003 * 109.46856 * 329.99579 * 19 18 17 38 38 H 0.96993 * 119.99759 * 0.02562 * 20 19 18 39 39 H 1.09001 * 109.47006 * 59.99999 * 25 24 23 40 40 H 1.08999 * 109.47246 * 180.02562 * 25 24 23 41 41 H 1.09004 * 109.46775 * 300.00251 * 25 24 23 42 42 H 1.09003 * 109.47443 * 60.00501 * 26 24 23 43 43 H 1.09006 * 109.47326 * 179.97438 * 26 24 23 44 44 H 1.08995 * 109.47497 * 300.00071 * 26 24 23 45 45 H 1.08992 * 109.47057 * 59.99330 * 27 24 23 46 46 H 1.08997 * 109.47077 * 179.97438 * 27 24 23 47 47 H 1.09002 * 109.46661 * 299.99506 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 1.8260 -2.5199 -4.0079 10 1 1.8271 -0.4196 -5.2204 11 1 3.8065 -1.1206 -4.0082 12 7 2.0184 -0.6906 1.1961 13 6 2.1470 -0.0184 2.3571 14 8 1.8571 1.1623 2.4119 15 6 2.6364 -0.7096 3.5545 16 6 2.8126 -0.1509 4.7878 17 6 3.2925 -1.1686 5.6270 18 6 3.3876 -2.2895 4.8784 19 6 3.8605 -3.6341 5.3677 20 7 2.7164 -4.4040 5.8622 21 6 2.9010 -5.6457 6.3527 22 8 4.0166 -6.1265 6.3853 23 8 1.8495 -6.3534 6.8066 24 6 2.1227 -7.6834 7.3213 25 6 3.0918 -7.5844 8.5012 26 6 0.8159 -8.3285 7.7868 27 6 2.7485 -8.5387 6.2178 28 8 2.9869 -2.0102 3.6313 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 0.7095 1.1620 -3.4843 33 1 2.2491 -1.6318 1.1525 34 1 2.6200 0.8752 5.0641 35 1 3.5401 -1.0734 6.6739 36 1 4.3341 -4.1734 4.5473 37 1 4.5804 -3.4946 6.1742 38 1 1.8260 -4.0201 5.8365 39 1 2.6460 -6.9750 9.2874 40 1 3.2973 -8.5828 8.8873 41 1 4.0228 -7.1249 8.1691 42 1 0.1258 -8.3991 6.9460 43 1 1.0209 -9.3271 8.1728 44 1 0.3697 -7.7193 8.5728 45 1 3.6794 -8.0792 5.8858 46 1 2.9540 -9.5369 6.6043 47 1 2.0581 -8.6092 5.3772 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172917034.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:59 Heat of formation + Delta-G solvation = -109.243055 kcal Electronic energy + Delta-G solvation = -28757.513634 eV Core-core repulsion = 24521.292625 eV Total energy + Delta-G solvation = -4236.221009 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.76764 -41.03723 -38.80056 -37.82454 -35.37306 -34.99763 -34.30637 -33.14948 -32.43440 -30.80161 -29.05373 -27.76326 -27.71028 -26.62596 -25.30418 -23.06884 -22.38562 -21.61368 -20.74472 -20.38932 -19.65013 -18.71179 -18.23559 -17.10335 -16.56837 -16.36330 -16.24314 -15.64662 -15.37543 -15.17734 -14.89655 -14.55251 -14.38532 -13.96626 -13.84068 -13.72491 -13.57241 -13.00971 -12.92707 -12.85387 -12.60036 -12.47364 -12.33535 -12.24674 -12.23145 -11.78407 -11.75469 -11.67186 -11.15854 -11.00315 -10.83722 -10.69873 -10.41823 -10.40628 -10.27973 -10.08848 -9.62716 -9.54138 -9.13354 -8.73330 -8.60106 -8.05421 -6.16725 -4.26427 0.96257 1.82144 2.36298 2.52134 2.61781 3.24357 3.29421 3.30844 3.66050 3.84323 3.85734 4.28721 4.35742 4.37507 4.40861 4.54787 4.81911 4.91824 5.05781 5.11806 5.15624 5.19235 5.22417 5.31086 5.34030 5.44126 5.51106 5.61561 5.63296 5.72058 5.75951 5.85986 5.94363 6.04164 6.20196 6.28371 6.73121 6.81815 6.88547 7.04818 7.05657 7.27273 7.46774 7.63113 7.82889 8.04125 8.06958 8.48632 8.65530 8.89311 9.40559 10.89291 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.013014 B = 0.002181 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.950137 B =12832.209772 C =14110.710829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.262 3.738 3 H 0.053 0.947 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.904 3.096 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.690 5.690 13 C 0.582 3.418 14 O -0.530 6.530 15 C -0.035 4.035 16 C -0.144 4.144 17 C -0.181 4.181 18 C -0.033 4.033 19 C 0.223 3.777 20 N -0.710 5.710 21 C 0.654 3.346 22 O -0.567 6.567 23 O -0.363 6.363 24 C 0.136 3.864 25 C -0.183 4.183 26 C -0.142 4.142 27 C -0.185 4.185 28 O -0.153 6.153 29 H 0.028 0.972 30 H 0.016 0.984 31 H 0.093 0.907 32 H 0.266 0.734 33 H 0.395 0.605 34 H 0.162 0.838 35 H 0.157 0.843 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.411 0.589 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.088 0.912 46 H 0.070 0.930 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.659 -15.630 22.045 27.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.161 3.839 3 H 0.071 0.929 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.337 5.337 13 C 0.365 3.635 14 O -0.409 6.409 15 C -0.088 4.088 16 C -0.165 4.165 17 C -0.201 4.201 18 C -0.085 4.085 19 C 0.101 3.899 20 N -0.370 5.370 21 C 0.408 3.592 22 O -0.456 6.456 23 O -0.278 6.278 24 C 0.100 3.900 25 C -0.241 4.241 26 C -0.199 4.199 27 C -0.242 4.242 28 O -0.049 6.049 29 H 0.047 0.953 30 H 0.035 0.965 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.228 0.772 34 H 0.180 0.820 35 H 0.174 0.826 36 H 0.110 0.890 37 H 0.123 0.877 38 H 0.246 0.754 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.086 0.914 45 H 0.107 0.893 46 H 0.089 0.911 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.873 -15.193 21.659 26.612 hybrid contribution 0.029 -0.627 -0.719 0.955 sum 2.902 -15.820 20.940 26.404 Atomic orbital electron populations 1.22095 0.98033 0.99390 1.01157 1.18892 0.91324 0.94100 0.79561 0.92925 1.21146 1.32768 1.13402 0.90156 0.91984 1.24881 0.94725 0.94945 0.99076 1.69885 1.35656 1.22315 1.24137 0.86468 0.79209 0.79586 0.81626 1.20107 1.21072 1.20116 1.46580 1.63090 1.13915 1.10079 1.16688 0.79314 0.86091 0.81433 1.90856 1.52052 1.14237 1.83801 1.22905 1.06433 0.81402 0.98104 1.21944 1.01936 1.01327 0.91296 1.21639 1.05290 0.92040 1.01153 1.22279 1.05976 0.97067 0.83151 1.19519 0.86565 0.84057 0.99710 1.44784 1.12473 1.13799 1.65975 1.17967 0.82940 0.81418 0.76915 1.90918 1.23986 1.70097 1.60644 1.86318 1.36569 1.30211 1.74659 1.22104 0.96534 0.77672 0.93738 1.22521 1.01208 1.03230 0.97104 1.21870 0.95350 1.00428 1.02228 1.22529 1.03254 1.00116 0.98296 1.84065 1.63359 1.27109 1.30323 0.95265 0.96474 0.88841 0.92410 0.77202 0.82039 0.82561 0.88953 0.87681 0.75366 0.92148 0.91088 0.89344 0.91341 0.90076 0.91431 0.89315 0.91083 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.26 37.16 0.34 -3.30 16 2 C 0.26 6.64 2.56 -69.08 -0.18 6.46 16 3 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 4 C -0.54 -14.15 8.73 -34.44 -0.30 -14.45 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.55 11.32 55.43 0.63 -23.92 16 8 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 N -0.69 -14.68 5.06 -56.25 -0.28 -14.96 16 13 C 0.58 11.91 7.75 -12.86 -0.10 11.81 16 14 O -0.53 -12.52 16.53 5.19 0.09 -12.43 16 15 C -0.03 -0.57 7.13 -36.80 -0.26 -0.83 16 16 C -0.14 -1.98 10.62 -39.39 -0.42 -2.39 16 17 C -0.18 -1.92 10.77 -39.89 -0.43 -2.35 16 18 C -0.03 -0.36 6.68 -35.42 -0.24 -0.60 16 19 C 0.22 2.00 6.20 -5.19 -0.03 1.97 16 20 N -0.71 -6.55 5.55 -66.47 -0.37 -6.92 16 21 C 0.65 7.06 8.06 54.06 0.44 7.49 16 22 O -0.57 -7.07 11.88 -19.28 -0.23 -7.30 16 23 O -0.36 -3.67 9.94 -40.30 -0.40 -4.07 16 24 C 0.14 1.12 1.13 -90.62 -0.10 1.02 16 25 C -0.18 -1.41 8.37 37.16 0.31 -1.09 16 26 C -0.14 -0.83 8.85 37.15 0.33 -0.51 16 27 C -0.18 -1.53 8.37 37.16 0.31 -1.22 16 28 O -0.15 -2.19 10.40 4.98 0.05 -2.14 16 29 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 32 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.39 7.53 8.30 -40.82 -0.34 7.20 16 34 H 0.16 2.08 8.06 -52.49 -0.42 1.66 16 35 H 0.16 1.19 8.06 -52.48 -0.42 0.77 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.41 3.41 8.57 -40.82 -0.35 3.06 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.09 0.86 5.88 -51.93 -0.31 0.56 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 0.92 5.88 -51.93 -0.31 0.62 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 395.33 15.07 5.96 5.96 Total: -1.00 -31.15 395.33 -7.05 -38.20 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -7.05 Total: 8.35 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -0.42 Total: 3.71 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: -0.03 Total: -45.81 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.49 Total: -25.94 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.15 -7.05 -38.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172917034.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.041 kcal (2) G-P(sol) polarization free energy of solvation -31.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds