Wall clock time and date at job start Tue Mar 31 2020 20:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21610 * 120.00383 * 0.02562 * 13 12 2 15 15 C 1.47380 * 119.99978 * 180.02562 * 13 12 2 16 16 C 1.36418 * 127.19196 * 359.68268 * 15 13 12 17 17 O 1.33652 * 108.39760 * 179.89452 * 16 15 13 18 18 C 1.34215 * 110.90692 * 0.39111 * 17 16 15 19 19 C 1.50701 * 125.43403 * 179.76192 * 18 17 16 20 20 N 1.46504 * 109.46901 * 269.99533 * 19 18 17 21 21 C 1.34774 * 119.99646 * 179.97438 * 20 19 18 22 22 O 1.21513 * 120.00162 * 0.02562 * 21 20 19 23 23 O 1.34640 * 119.99845 * 180.02562 * 21 20 19 24 24 C 1.45201 * 116.99989 * 180.02562 * 23 21 20 25 25 C 1.53004 * 109.47131 * 60.00219 * 24 23 21 26 26 C 1.53000 * 109.47107 * 180.02562 * 24 23 21 27 27 C 1.53003 * 109.47254 * 300.00033 * 24 23 21 28 28 C 1.34171 * 109.12373 * 359.75880 * 18 17 16 29 29 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 30 30 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 34 34 H 1.08004 * 125.80040 * 0.02562 * 16 15 13 35 35 H 1.08998 * 109.47116 * 29.99758 * 19 18 17 36 36 H 1.08999 * 109.46616 * 149.99904 * 19 18 17 37 37 H 0.96996 * 120.00246 * 0.02562 * 20 19 18 38 38 H 1.08991 * 109.47251 * 59.99767 * 25 24 23 39 39 H 1.09000 * 109.47233 * 180.02562 * 25 24 23 40 40 H 1.09007 * 109.46922 * 299.99768 * 25 24 23 41 41 H 1.08999 * 109.47191 * 59.99730 * 26 24 23 42 42 H 1.09000 * 109.46996 * 180.02562 * 26 24 23 43 43 H 1.09005 * 109.46871 * 300.00017 * 26 24 23 44 44 H 1.09002 * 109.46878 * 60.00350 * 27 24 23 45 45 H 1.09000 * 109.47263 * 179.97438 * 27 24 23 46 46 H 1.08999 * 109.46821 * 300.00134 * 27 24 23 47 47 H 1.08004 * 127.02359 * 180.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8573 1.1618 2.4119 15 6 2.6388 -0.7126 3.5604 16 6 2.9978 -2.0244 3.6665 17 8 3.3890 -2.2543 4.9237 18 6 3.2954 -1.1399 5.6658 19 6 3.6471 -1.0313 7.1271 20 7 2.4636 -1.3294 7.9376 21 6 2.5416 -1.2938 9.2827 22 8 3.5934 -1.0140 9.8230 23 8 1.4542 -1.5682 10.0276 24 6 1.6114 -1.5103 11.4699 25 6 2.0454 -0.1014 11.8795 26 6 0.2796 -1.8498 12.1421 27 6 2.6750 -2.5192 11.9079 28 6 2.8388 -0.1382 4.8988 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.7088 1.1611 -3.4845 33 1 2.2490 -1.6316 1.1527 34 1 2.9725 -2.7528 2.8695 35 1 4.4384 -1.7424 7.3643 36 1 3.9905 -0.0198 7.3439 37 1 1.6241 -1.5530 7.5063 38 1 1.2877 0.6173 11.5674 39 1 2.1638 -0.0581 12.9621 40 1 2.9943 0.1401 11.4005 41 1 -0.0292 -2.8536 11.8502 42 1 0.3975 -1.8059 13.2248 43 1 -0.4785 -1.1314 11.8301 44 1 3.6239 -2.2776 11.4290 45 1 2.7933 -2.4754 12.9906 46 1 2.3658 -3.5228 11.6161 47 1 2.6560 0.8820 5.2025 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189136381.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:07 Heat of formation + Delta-G solvation = -110.064475 kcal Electronic energy + Delta-G solvation = -28428.616668 eV Core-core repulsion = 24192.360039 eV Total energy + Delta-G solvation = -4236.256628 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.66487 -41.04407 -38.66637 -37.84427 -35.39624 -34.83766 -34.31852 -32.93865 -32.34233 -30.83974 -28.80906 -27.77689 -27.72955 -26.34777 -25.29627 -23.68026 -22.62296 -21.17014 -20.76341 -20.40986 -19.25138 -18.71464 -17.77449 -17.00144 -16.60610 -16.47917 -16.29946 -15.59285 -15.27977 -15.26060 -14.95323 -14.88572 -14.42989 -14.01404 -13.84448 -13.81641 -13.64160 -12.99081 -12.88314 -12.80537 -12.59235 -12.43697 -12.27551 -12.26352 -12.14849 -11.77626 -11.73386 -11.68362 -11.13170 -10.99806 -10.79714 -10.71253 -10.42660 -10.37591 -10.26768 -9.76442 -9.60250 -9.26556 -9.09933 -8.84730 -8.58900 -7.97858 -6.15550 -4.25398 1.22536 1.71226 2.21234 2.51701 2.66803 3.23303 3.28933 3.29669 3.84759 3.89391 3.93344 4.27941 4.34184 4.39177 4.40579 4.53200 4.74119 4.86582 5.00175 5.10261 5.15708 5.16855 5.17445 5.29856 5.32437 5.42454 5.49281 5.61310 5.61782 5.67762 5.75397 5.85664 5.92794 6.02580 6.18980 6.22590 6.79255 6.88211 6.92748 7.04882 7.10690 7.38734 7.51300 7.65086 7.87235 8.03542 8.10838 8.58678 8.73432 9.04165 9.42013 10.90377 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.030489 B = 0.001716 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.129203 B =16314.840371 C =16602.808562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.265 3.735 3 H 0.050 0.950 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.702 5.702 13 C 0.569 3.431 14 O -0.549 6.549 15 C -0.221 4.221 16 C 0.026 3.974 17 O -0.170 6.170 18 C -0.057 4.057 19 C 0.227 3.773 20 N -0.710 5.710 21 C 0.654 3.346 22 O -0.568 6.568 23 O -0.363 6.363 24 C 0.136 3.864 25 C -0.184 4.184 26 C -0.141 4.141 27 C -0.184 4.184 28 C -0.122 4.122 29 H 0.091 0.909 30 H 0.027 0.973 31 H 0.015 0.985 32 H 0.265 0.735 33 H 0.386 0.614 34 H 0.216 0.784 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.411 0.589 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.060 0.940 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.952 -8.136 26.726 28.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.068 0.932 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.350 5.350 13 C 0.354 3.646 14 O -0.428 6.428 15 C -0.226 4.226 16 C -0.044 4.044 17 O -0.066 6.066 18 C -0.105 4.105 19 C 0.106 3.894 20 N -0.370 5.370 21 C 0.407 3.593 22 O -0.457 6.457 23 O -0.278 6.278 24 C 0.099 3.901 25 C -0.241 4.241 26 C -0.199 4.199 27 C -0.241 4.241 28 C -0.143 4.143 29 H 0.110 0.890 30 H 0.046 0.954 31 H 0.034 0.966 32 H 0.075 0.925 33 H 0.218 0.782 34 H 0.232 0.768 35 H 0.108 0.892 36 H 0.122 0.878 37 H 0.246 0.754 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.107 0.893 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.089 0.911 46 H 0.079 0.921 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.247 -7.279 27.057 28.109 hybrid contribution -0.048 -0.901 -1.287 1.572 sum 2.198 -8.180 25.770 27.126 Atomic orbital electron populations 1.22083 0.98313 0.99174 1.01017 1.18787 0.91120 0.94071 0.79684 0.93175 1.21152 1.32672 1.13320 0.90271 0.92105 1.24892 0.94770 0.94955 0.99072 1.69892 1.35640 1.22357 1.24061 0.86488 0.79166 0.79548 0.81767 1.21104 1.20163 1.20168 1.46425 1.64922 1.13300 1.10340 1.17271 0.78595 0.86494 0.82230 1.90750 1.51533 1.15542 1.84990 1.21946 1.10032 0.94279 0.96325 1.24580 0.97939 0.97191 0.84712 1.83708 1.66876 1.35913 1.20139 1.21794 1.09756 0.85126 0.93834 1.19463 0.86468 1.03596 0.79922 1.44832 1.15211 1.74199 1.02805 1.17980 0.82349 0.76481 0.82478 1.90914 1.29643 1.53616 1.71557 1.86321 1.37118 1.83284 1.21049 1.22103 0.96958 0.96646 0.74365 1.22524 1.04026 0.95044 1.02538 1.21870 0.94928 1.02943 1.00122 1.22523 1.00646 0.98485 1.02441 1.22677 1.00238 1.00266 0.91072 0.89039 0.95429 0.96579 0.92455 0.78188 0.76773 0.89170 0.87751 0.75382 0.92048 0.91094 0.89328 0.91417 0.90083 0.91366 0.89344 0.91093 0.92133 0.82095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.26 37.16 0.34 -3.27 16 2 C 0.26 6.64 2.56 -69.09 -0.18 6.47 16 3 H 0.05 1.46 7.58 -51.92 -0.39 1.07 16 4 C -0.54 -13.88 8.73 -34.44 -0.30 -14.18 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.53 11.32 55.43 0.63 -23.90 16 8 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 9 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 12 N -0.70 -14.27 5.06 -56.03 -0.28 -14.55 16 13 C 0.57 11.47 7.78 -12.54 -0.10 11.37 16 14 O -0.55 -13.36 16.65 5.27 0.09 -13.28 16 15 C -0.22 -3.38 6.31 -103.28 -0.65 -4.03 16 16 C 0.03 0.31 11.61 30.08 0.35 0.66 16 17 O -0.17 -1.92 10.52 7.65 0.08 -1.84 16 18 C -0.06 -0.61 6.65 -35.74 -0.24 -0.85 16 19 C 0.23 2.02 6.19 -5.19 -0.03 1.98 16 20 N -0.71 -6.47 5.55 -66.46 -0.37 -6.84 16 21 C 0.65 6.95 8.06 54.05 0.44 7.39 16 22 O -0.57 -7.00 11.88 -19.28 -0.23 -7.23 16 23 O -0.36 -3.59 9.94 -40.32 -0.40 -4.00 16 24 C 0.14 1.09 1.13 -90.62 -0.10 0.99 16 25 C -0.18 -1.44 8.37 37.16 0.31 -1.13 16 26 C -0.14 -0.80 8.85 37.16 0.33 -0.47 16 27 C -0.18 -1.40 8.37 37.16 0.31 -1.09 16 28 C -0.12 -1.61 10.90 -37.46 -0.41 -2.01 16 29 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.39 6.48 7.51 -40.82 -0.31 6.18 16 34 H 0.22 1.79 7.47 -52.48 -0.39 1.39 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.41 3.36 8.57 -40.82 -0.35 3.01 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 0.88 5.88 -51.93 -0.31 0.58 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.87 5.88 -51.93 -0.31 0.56 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.16 2.04 8.06 -52.48 -0.42 1.62 16 LS Contribution 394.48 15.07 5.94 5.94 Total: -1.00 -32.76 394.48 -6.57 -39.33 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -6.98 Total: 7.63 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -0.02 Total: 3.47 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: -0.03 Total: -45.29 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.46 Total: -26.34 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.76 -6.57 -39.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189136381.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.735 kcal (2) G-P(sol) polarization free energy of solvation -32.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds