Wall clock time and date at job start Tue Mar 31 2020 20:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21610 * 120.00383 * 0.02562 * 13 12 2 15 15 C 1.47380 * 119.99978 * 180.02562 * 13 12 2 16 16 C 1.36418 * 127.19196 * 359.68268 * 15 13 12 17 17 O 1.33652 * 108.39760 * 179.89452 * 16 15 13 18 18 C 1.34215 * 110.90692 * 0.39111 * 17 16 15 19 19 C 1.50701 * 125.43403 * 179.76192 * 18 17 16 20 20 N 1.46504 * 109.46901 * 269.99533 * 19 18 17 21 21 C 1.34774 * 119.99646 * 179.97438 * 20 19 18 22 22 O 1.21513 * 120.00162 * 0.02562 * 21 20 19 23 23 O 1.34640 * 119.99845 * 180.02562 * 21 20 19 24 24 C 1.45201 * 116.99989 * 180.02562 * 23 21 20 25 25 C 1.53004 * 109.47131 * 60.00219 * 24 23 21 26 26 C 1.53000 * 109.47107 * 180.02562 * 24 23 21 27 27 C 1.53003 * 109.47254 * 300.00033 * 24 23 21 28 28 C 1.34171 * 109.12373 * 359.75880 * 18 17 16 29 29 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 30 30 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 34 34 H 1.08004 * 125.80040 * 0.02562 * 16 15 13 35 35 H 1.08998 * 109.47116 * 29.99758 * 19 18 17 36 36 H 1.08999 * 109.46616 * 149.99904 * 19 18 17 37 37 H 0.96996 * 120.00246 * 0.02562 * 20 19 18 38 38 H 1.08991 * 109.47251 * 59.99767 * 25 24 23 39 39 H 1.09000 * 109.47233 * 180.02562 * 25 24 23 40 40 H 1.09007 * 109.46922 * 299.99768 * 25 24 23 41 41 H 1.08999 * 109.47191 * 59.99730 * 26 24 23 42 42 H 1.09000 * 109.46996 * 180.02562 * 26 24 23 43 43 H 1.09005 * 109.46871 * 300.00017 * 26 24 23 44 44 H 1.09002 * 109.46878 * 60.00350 * 27 24 23 45 45 H 1.09000 * 109.47263 * 179.97438 * 27 24 23 46 46 H 1.08999 * 109.46821 * 300.00134 * 27 24 23 47 47 H 1.08004 * 127.02359 * 180.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8573 1.1618 2.4119 15 6 2.6388 -0.7126 3.5604 16 6 2.9978 -2.0244 3.6665 17 8 3.3890 -2.2543 4.9237 18 6 3.2954 -1.1399 5.6658 19 6 3.6471 -1.0313 7.1271 20 7 2.4636 -1.3294 7.9376 21 6 2.5416 -1.2938 9.2827 22 8 3.5934 -1.0140 9.8230 23 8 1.4542 -1.5682 10.0276 24 6 1.6114 -1.5103 11.4699 25 6 2.0454 -0.1014 11.8795 26 6 0.2796 -1.8498 12.1421 27 6 2.6750 -2.5192 11.9079 28 6 2.8388 -0.1382 4.8988 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.7088 1.1611 -3.4845 33 1 2.2490 -1.6316 1.1527 34 1 2.9725 -2.7528 2.8695 35 1 4.4384 -1.7424 7.3643 36 1 3.9905 -0.0198 7.3439 37 1 1.6241 -1.5530 7.5063 38 1 1.2877 0.6173 11.5674 39 1 2.1638 -0.0581 12.9621 40 1 2.9943 0.1401 11.4005 41 1 -0.0292 -2.8536 11.8502 42 1 0.3975 -1.8059 13.2248 43 1 -0.4785 -1.1314 11.8301 44 1 3.6239 -2.2776 11.4290 45 1 2.7933 -2.4754 12.9906 46 1 2.3658 -3.5228 11.6161 47 1 2.6560 0.8820 5.2025 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189136381.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:06 Heat of formation + Delta-G solvation = -133.456329 kcal Electronic energy + Delta-G solvation = -28429.631015 eV Core-core repulsion = 24192.360039 eV Total energy + Delta-G solvation = -4237.270975 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.67119 -41.79611 -40.33588 -38.56471 -36.72670 -36.21610 -34.96883 -34.48375 -33.79534 -31.94802 -30.53043 -28.32669 -28.27151 -27.36148 -27.21516 -25.09400 -23.35643 -22.52782 -22.11814 -21.25440 -20.74934 -19.64419 -18.85510 -18.12922 -17.74329 -17.32989 -17.20407 -17.13480 -16.97528 -16.18371 -16.05986 -15.70879 -15.60686 -15.47909 -15.04251 -14.60952 -14.47455 -14.40295 -14.30148 -13.82440 -13.69648 -13.34823 -13.26721 -13.04674 -12.93692 -12.88223 -12.86043 -12.83996 -12.72502 -12.43688 -12.32650 -12.26766 -12.15307 -11.37535 -11.18434 -11.12584 -10.97723 -10.89066 -10.58609 -10.35755 -9.92446 -9.70512 -8.16598 -6.34438 0.27962 0.65246 1.35600 1.47011 1.49020 1.56738 1.71242 1.76409 2.32611 2.43451 2.56511 3.14132 3.17325 3.38500 3.63490 3.77436 3.82766 3.96643 3.97574 4.19008 4.34911 4.45610 4.59054 4.65005 4.65320 4.75967 4.77234 4.80249 4.88111 4.90162 4.90960 4.92547 5.00224 5.08751 5.16844 5.20339 5.31563 5.36623 5.42922 5.54959 5.58781 5.67783 5.86936 5.92452 6.08954 6.29285 6.72240 6.92789 7.26428 7.31910 7.50567 8.89661 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.030489 B = 0.001716 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.129203 B =16314.840371 C =16602.808562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.270 3.730 3 H -0.002 1.002 4 C -0.546 4.546 5 H 0.078 0.922 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.975 3.025 9 H -0.289 1.289 10 H -0.271 1.271 11 H -0.262 1.262 12 N -0.696 5.696 13 C 0.569 3.431 14 O -0.603 6.603 15 C -0.262 4.262 16 C 0.067 3.933 17 O -0.162 6.162 18 C -0.032 4.032 19 C 0.231 3.769 20 N -0.704 5.704 21 C 0.651 3.349 22 O -0.587 6.587 23 O -0.369 6.369 24 C 0.124 3.876 25 C -0.181 4.181 26 C -0.137 4.137 27 C -0.179 4.179 28 C -0.139 4.139 29 H 0.067 0.933 30 H 0.043 0.957 31 H 0.010 0.990 32 H 0.265 0.735 33 H 0.406 0.594 34 H 0.253 0.747 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.416 0.584 38 H 0.059 0.941 39 H 0.090 0.910 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.102 0.898 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.090 0.910 46 H 0.062 0.938 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.584 -11.055 27.870 30.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.167 3.833 3 H 0.016 0.984 4 C -0.584 4.584 5 H 0.096 0.904 6 C -0.187 4.187 7 N -0.556 5.556 8 Si 0.799 3.201 9 H -0.214 1.214 10 H -0.196 1.196 11 H -0.187 1.187 12 N -0.345 5.345 13 C 0.357 3.643 14 O -0.486 6.486 15 C -0.267 4.267 16 C -0.004 4.004 17 O -0.057 6.057 18 C -0.081 4.081 19 C 0.109 3.891 20 N -0.365 5.365 21 C 0.405 3.595 22 O -0.478 6.478 23 O -0.284 6.284 24 C 0.088 3.912 25 C -0.238 4.238 26 C -0.194 4.194 27 C -0.236 4.236 28 C -0.160 4.160 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.029 0.971 32 H 0.074 0.926 33 H 0.241 0.759 34 H 0.269 0.731 35 H 0.119 0.881 36 H 0.130 0.870 37 H 0.252 0.748 38 H 0.078 0.922 39 H 0.109 0.891 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.121 0.879 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.109 0.891 46 H 0.081 0.919 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.885 -10.253 28.230 30.172 hybrid contribution -0.233 0.012 -1.538 1.556 sum 2.652 -10.240 26.692 28.711 Atomic orbital electron populations 1.21904 0.98173 0.99652 0.99550 1.18389 0.91231 0.91988 0.81723 0.98431 1.21500 1.32714 1.13707 0.90516 0.90401 1.25829 0.94865 0.95588 1.02419 1.70055 1.36912 1.23948 1.24683 0.85361 0.78594 0.78724 0.77422 1.21439 1.19596 1.18672 1.46089 1.64983 1.14103 1.09279 1.17860 0.77266 0.85956 0.83189 1.90714 1.53867 1.18086 1.85932 1.21517 1.13933 0.96085 0.95159 1.25139 0.94004 0.96085 0.85189 1.83774 1.66190 1.35760 1.19936 1.21875 1.07903 0.84124 0.94192 1.19529 0.86570 1.04441 0.78527 1.44765 1.15493 1.73808 1.02456 1.18092 0.82303 0.76350 0.82772 1.90912 1.30391 1.54516 1.71998 1.86332 1.36812 1.83095 1.22163 1.22439 0.98439 0.96794 0.73525 1.22484 1.02636 0.95035 1.03629 1.21897 0.93427 1.02951 1.01163 1.22475 0.99286 0.98384 1.03501 1.22689 1.01600 1.00894 0.90808 0.91407 0.93754 0.97104 0.92562 0.75852 0.73076 0.88093 0.87044 0.74779 0.92172 0.89089 0.91676 0.91205 0.87926 0.91439 0.91666 0.89123 0.91925 0.82555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.75 9.26 71.98 0.67 -6.08 16 2 C 0.27 13.88 2.56 44.24 0.11 14.00 16 3 H 0.00 -0.14 7.58 -2.38 -0.02 -0.15 16 4 C -0.55 -28.15 8.73 25.60 0.22 -27.93 16 5 H 0.08 3.65 7.74 -2.91 -0.02 3.63 16 6 C 0.01 0.69 5.30 84.66 0.45 1.14 16 7 N -0.92 -52.20 11.32 21.45 0.24 -51.96 16 8 Si 0.97 41.07 29.54 68.60 2.03 43.09 16 9 H -0.29 -12.21 7.11 99.48 0.71 -11.51 16 10 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 11 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 12 N -0.70 -28.19 5.06 -449.42 -2.27 -30.46 16 13 C 0.57 23.33 7.78 86.65 0.67 24.00 16 14 O -0.60 -30.88 16.65 -4.06 -0.07 -30.95 16 15 C -0.26 -7.77 6.31 -18.99 -0.12 -7.89 16 16 C 0.07 1.35 11.61 67.39 0.78 2.14 16 17 O -0.16 -3.11 10.52 4.47 0.05 -3.07 16 18 C -0.03 -0.64 6.65 24.76 0.16 -0.47 16 19 C 0.23 3.69 6.19 85.63 0.53 4.22 16 20 N -0.70 -11.91 5.55 -594.60 -3.30 -15.21 16 21 C 0.65 13.33 8.06 129.79 1.05 14.38 16 22 O -0.59 -14.24 11.88 19.80 0.24 -14.01 16 23 O -0.37 -6.98 9.94 -55.49 -0.55 -7.53 16 24 C 0.12 1.83 1.13 -10.79 -0.01 1.82 16 25 C -0.18 -2.66 8.37 71.98 0.60 -2.06 16 26 C -0.14 -1.28 8.85 71.98 0.64 -0.64 16 27 C -0.18 -2.51 8.37 71.98 0.60 -1.91 16 28 C -0.14 -3.59 10.90 23.65 0.26 -3.33 16 29 H 0.07 3.74 6.07 -2.39 -0.01 3.73 16 30 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 33 H 0.41 12.87 7.51 -92.71 -0.70 12.18 16 34 H 0.25 3.00 7.47 -2.91 -0.02 2.98 16 35 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.42 6.20 8.57 -92.71 -0.79 5.40 16 38 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.06 1.29 5.88 -2.38 -0.01 1.28 16 41 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 44 H 0.06 1.25 5.88 -2.39 -0.01 1.23 16 45 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.16 4.09 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -74.15 394.48 2.49 -71.66 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: -0.48 Total: 27.04 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: 6.62 Total: 11.39 kcal Atomic # 7 Polarization: -92.30 SS G_CDS: -5.33 Total: -97.63 kcal Atomic # 8 Polarization: -55.22 SS G_CDS: -0.34 Total: -55.56 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.09 kcal Total: -74.15 2.49 -71.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189136381.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.796 kcal (2) G-P(sol) polarization free energy of solvation -74.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds