Wall clock time and date at job start Tue Mar 31 2020 21:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46496 * 109.47211 * 2 1 4 4 C 1.46506 * 119.99408 * 269.99342 * 3 2 1 5 5 C 1.50699 * 109.47280 * 270.00106 * 4 3 2 6 6 H 1.07998 * 119.99983 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99746 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00651 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99729 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47243 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.46710 * 119.99858 * 9 7 5 12 12 H 1.48497 * 109.47300 * 239.99489 * 9 7 5 13 13 C 1.34772 * 120.00500 * 89.99687 * 3 2 1 14 14 O 1.21284 * 120.00344 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99978 * 359.97438 * 13 3 2 16 16 N 1.46898 * 109.46869 * 186.05316 * 15 13 3 17 17 C 1.47162 * 110.99959 * 66.16509 * 16 15 13 18 18 C 1.52895 * 108.50845 * 52.19634 * 17 16 15 19 19 C 1.50717 * 109.96005 * 50.40546 * 18 17 16 20 20 C 1.38901 * 118.48017 * 163.12120 * 19 18 17 21 21 F 1.35089 * 119.82688 * 359.75956 * 20 19 18 22 22 C 1.38247 * 120.34613 * 179.74362 * 20 19 18 23 23 C 1.38211 * 119.82765 * 359.95709 * 22 20 19 24 24 C 1.38230 * 119.87004 * 0.09746 * 23 22 20 25 25 F 1.35101 * 119.80874 * 180.02562 * 24 23 22 26 26 C 1.37780 * 121.66829 * 343.28634 * 19 18 17 27 27 C 1.46638 * 110.99621 * 189.15289 * 16 15 13 28 28 H 1.08994 * 109.46964 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46908 * 300.00755 * 1 2 3 30 30 H 1.09004 * 109.46432 * 60.00510 * 1 2 3 31 31 H 1.08994 * 109.47615 * 239.99138 * 2 1 3 32 32 H 1.09004 * 109.46432 * 119.99490 * 2 1 3 33 33 H 1.09000 * 109.47037 * 30.00581 * 4 3 2 34 34 H 1.09008 * 109.46891 * 149.99789 * 4 3 2 35 35 H 0.96994 * 120.00849 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.46870 * 66.05277 * 15 13 3 37 37 H 1.09004 * 109.47178 * 306.05472 * 15 13 3 38 38 H 1.08995 * 109.63324 * 292.48923 * 17 16 15 39 39 H 1.09001 * 109.62997 * 171.90076 * 17 16 15 40 40 H 1.08998 * 109.38747 * 290.25701 * 18 17 16 41 41 H 1.09005 * 109.30793 * 170.50269 * 18 17 16 42 42 H 1.08000 * 120.08562 * 179.97438 * 22 20 19 43 43 H 1.08004 * 120.06283 * 180.02562 * 23 22 20 44 44 H 1.08994 * 109.26813 * 49.38718 * 27 16 15 45 45 H 1.09006 * 109.27004 * 168.88907 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2627 2.0716 -1.2689 5 6 3.6859 1.8347 -1.7038 6 1 4.3430 1.2307 -1.0957 7 6 4.1495 2.3901 -2.8775 8 7 3.3496 3.1261 -3.6178 9 14 5.9140 2.0970 -3.4163 10 1 6.6016 1.2420 -2.4157 11 1 5.9220 1.4183 -4.7371 12 1 6.6213 3.3983 -3.5242 13 6 2.2430 2.0166 1.1671 14 8 2.6468 3.1602 1.1671 15 6 1.9912 1.3065 2.4723 16 7 2.1696 2.2491 3.5848 17 6 1.1395 3.2997 3.5563 18 6 -0.2333 2.6313 3.4768 19 6 -0.3527 1.5727 4.5429 20 6 -1.6180 1.1033 4.8715 21 9 -2.7040 1.6013 4.2411 22 6 -1.7717 0.1289 5.8400 23 6 -0.6605 -0.3816 6.4841 24 6 0.5991 0.0858 6.1587 25 9 1.6845 -0.4144 6.7887 26 6 0.7547 1.0711 5.1914 27 6 2.1467 1.5506 4.8740 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8898 32 1 1.8933 -0.5138 0.8901 33 1 1.5818 1.6875 -2.0285 34 1 2.0956 3.1409 -1.1386 35 1 3.6756 3.5165 -4.4437 36 1 2.6954 0.4813 2.5786 37 1 0.9726 0.9187 2.4844 38 1 1.2886 3.9350 2.6833 39 1 1.2029 3.8993 4.4643 40 1 -0.3560 2.1724 2.4958 41 1 -1.0091 3.3827 3.6244 42 1 -2.7576 -0.2328 6.0925 43 1 -0.7762 -1.1432 7.2411 44 1 2.8236 0.6973 4.8328 45 1 2.4749 2.2326 5.6585 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267762337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:05 Heat of formation + Delta-G solvation = -87.191790 kcal Electronic energy + Delta-G solvation = -30375.643880 eV Core-core repulsion = 26029.291570 eV Total energy + Delta-G solvation = -4346.352310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.24272 -49.21726 -40.70565 -38.92970 -37.08828 -35.20882 -32.83107 -32.55393 -31.68677 -30.10514 -29.27733 -28.57728 -26.57242 -24.54329 -23.87020 -23.03118 -22.43031 -22.36425 -20.08305 -18.20550 -17.94903 -17.53566 -17.34313 -16.57995 -16.42056 -16.23875 -16.00727 -15.59146 -15.51117 -14.85167 -14.71793 -14.38236 -14.25263 -14.10401 -13.79832 -13.71323 -13.41039 -13.30583 -13.08050 -12.80231 -12.64432 -12.35649 -12.01705 -11.85793 -11.77559 -11.72262 -11.55007 -11.47447 -11.19119 -10.90984 -10.75629 -10.72427 -10.52541 -10.10755 -9.58654 -9.24484 -8.93248 -8.80005 -8.42027 -8.30574 -7.63139 -6.02649 -4.07010 0.57403 0.62860 2.94177 3.31297 3.38496 3.41184 3.46302 3.54667 3.78600 3.82964 4.10986 4.17694 4.30559 4.46810 4.47921 4.68585 4.91300 4.96695 4.97943 5.18529 5.20774 5.26968 5.32245 5.36596 5.42678 5.51336 5.56349 5.57050 5.59999 5.65850 5.70583 5.74211 5.85881 5.91811 6.00981 6.15542 6.21737 6.42825 6.45697 6.82822 6.94950 7.12631 7.45895 7.57667 7.94347 8.25689 8.44536 8.93232 9.14120 9.58337 11.05400 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017908 B = 0.003095 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.133194 B = 9045.253296 C = 9512.074682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.508 3.492 14 O -0.523 6.523 15 C 0.026 3.974 16 N -0.500 5.500 17 C 0.050 3.950 18 C -0.123 4.123 19 C -0.079 4.079 20 C 0.091 3.909 21 F -0.132 7.132 22 C -0.127 4.127 23 C -0.130 4.130 24 C 0.095 3.905 25 F -0.132 7.132 26 C -0.119 4.119 27 C 0.092 3.908 28 H 0.059 0.941 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.031 0.969 34 H 0.043 0.957 35 H 0.262 0.738 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.110 0.890 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.145 0.855 43 H 0.145 0.855 44 H 0.095 0.905 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.326 -8.301 20.212 24.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.129 3.871 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.293 3.707 14 O -0.399 6.399 15 C -0.105 4.105 16 N -0.221 5.221 17 C -0.078 4.078 18 C -0.161 4.161 19 C -0.080 4.080 20 C 0.071 3.929 21 F -0.110 7.110 22 C -0.146 4.146 23 C -0.148 4.148 24 C 0.075 3.925 25 F -0.110 7.110 26 C -0.122 4.122 27 C -0.037 4.037 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.128 0.872 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.163 0.837 43 H 0.163 0.837 44 H 0.113 0.887 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.608 -7.329 19.937 23.743 hybrid contribution -0.038 -0.823 -0.236 0.857 sum -10.645 -8.152 19.701 23.831 Atomic orbital electron populations 1.22230 0.96937 1.01397 1.02126 1.21395 0.93354 0.84430 1.02607 1.48259 1.64027 1.13178 1.07702 1.19251 0.96235 0.93581 0.78041 1.21480 0.96933 1.31722 1.06156 0.92415 1.24931 0.97815 0.94945 0.96428 1.69937 1.35589 1.33591 1.14344 0.86455 0.84726 0.78061 0.78252 1.19794 1.21036 1.20888 1.20037 0.78934 0.87133 0.84575 1.90649 1.44634 1.17777 1.86792 1.22274 1.01680 0.95588 0.90969 1.62297 1.47562 1.11823 1.00371 1.22417 0.86079 0.94407 1.04896 1.21190 1.01517 0.96711 0.96719 1.19529 0.90537 0.99067 0.98894 1.17626 0.82909 0.96938 0.95410 1.91512 1.52533 1.86243 1.80757 1.20916 1.00176 0.97052 0.96483 1.20911 0.90321 1.01841 1.01773 1.17567 0.83423 0.96310 0.95212 1.91514 1.53049 1.86048 1.80428 1.20442 0.98466 0.96739 0.96526 1.21236 0.90182 0.99434 0.92799 0.92186 0.93479 0.91880 0.89836 0.92022 0.95117 0.93920 0.92819 0.88446 0.91923 0.87234 0.90258 0.89328 0.89183 0.83726 0.83718 0.88656 0.88189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.18 37.16 0.38 -1.87 16 2 C 0.11 1.69 5.85 -4.04 -0.02 1.66 16 3 N -0.60 -12.36 2.46 -175.05 -0.43 -12.79 16 4 C 0.25 6.40 5.16 -5.19 -0.03 6.37 16 5 C -0.52 -14.81 9.39 -34.44 -0.32 -15.14 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.57 13.29 55.43 0.74 -25.84 16 9 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.51 10.27 7.33 -10.99 -0.08 10.19 16 14 O -0.52 -12.74 14.20 5.55 0.08 -12.67 16 15 C 0.03 0.39 3.25 -4.98 -0.02 0.37 16 16 N -0.50 -7.12 4.72 -237.64 -1.12 -8.24 16 17 C 0.05 0.67 5.58 -3.73 -0.02 0.65 16 18 C -0.12 -1.46 4.81 -27.93 -0.13 -1.60 16 19 C -0.08 -0.87 5.11 -104.54 -0.53 -1.40 16 20 C 0.09 0.93 7.23 -39.33 -0.28 0.65 16 21 F -0.13 -1.47 16.56 2.25 0.04 -1.43 16 22 C -0.13 -1.03 10.02 -39.59 -0.40 -1.43 16 23 C -0.13 -1.02 10.02 -39.59 -0.40 -1.42 16 24 C 0.09 0.92 7.22 -39.32 -0.28 0.63 16 25 F -0.13 -1.32 16.54 2.25 0.04 -1.29 16 26 C -0.12 -1.26 5.40 -104.57 -0.56 -1.83 16 27 C 0.09 1.03 5.21 -5.16 -0.03 1.00 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.61 6.78 -51.93 -0.35 0.25 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 32 H 0.06 0.82 6.61 -51.93 -0.34 0.48 16 33 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 34 H 0.04 1.24 7.42 -51.92 -0.39 0.86 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.10 1.35 7.50 -51.93 -0.39 0.96 16 37 H 0.06 0.85 4.07 -51.93 -0.21 0.64 16 38 H 0.11 1.79 6.29 -51.93 -0.33 1.47 16 39 H 0.08 0.93 8.05 -51.93 -0.42 0.51 16 40 H 0.09 1.16 6.37 -51.93 -0.33 0.83 16 41 H 0.09 0.98 7.94 -51.93 -0.41 0.57 16 42 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.15 0.79 8.06 -52.48 -0.42 0.36 16 44 H 0.10 1.01 7.67 -51.93 -0.40 0.61 16 45 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 367.34 15.07 5.54 5.54 Total: -1.00 -32.54 367.34 -9.04 -41.59 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -6.06 Total: -0.26 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -2.83 Total: -1.53 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: -0.81 Total: -46.87 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.08 Total: -12.67 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.07 Total: -2.72 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.54 -9.04 -41.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267762337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.606 kcal (2) G-P(sol) polarization free energy of solvation -32.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds