Wall clock time and date at job start Tue Mar 31 2020 21:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46496 * 109.47211 * 2 1 4 4 C 1.46506 * 119.99408 * 269.99342 * 3 2 1 5 5 C 1.50699 * 109.47280 * 270.00106 * 4 3 2 6 6 H 1.07998 * 119.99983 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99746 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00651 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99729 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47243 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.46710 * 119.99858 * 9 7 5 12 12 H 1.48497 * 109.47300 * 239.99489 * 9 7 5 13 13 C 1.34772 * 120.00500 * 89.99687 * 3 2 1 14 14 O 1.21284 * 120.00344 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99978 * 359.97438 * 13 3 2 16 16 N 1.46898 * 109.46869 * 186.05316 * 15 13 3 17 17 C 1.47162 * 110.99959 * 66.16509 * 16 15 13 18 18 C 1.52895 * 108.50845 * 52.19634 * 17 16 15 19 19 C 1.50717 * 109.96005 * 50.40546 * 18 17 16 20 20 C 1.38901 * 118.48017 * 163.12120 * 19 18 17 21 21 F 1.35089 * 119.82688 * 359.75956 * 20 19 18 22 22 C 1.38247 * 120.34613 * 179.74362 * 20 19 18 23 23 C 1.38211 * 119.82765 * 359.95709 * 22 20 19 24 24 C 1.38230 * 119.87004 * 0.09746 * 23 22 20 25 25 F 1.35101 * 119.80874 * 180.02562 * 24 23 22 26 26 C 1.37780 * 121.66829 * 343.28634 * 19 18 17 27 27 C 1.46638 * 110.99621 * 189.15289 * 16 15 13 28 28 H 1.08994 * 109.46964 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46908 * 300.00755 * 1 2 3 30 30 H 1.09004 * 109.46432 * 60.00510 * 1 2 3 31 31 H 1.08994 * 109.47615 * 239.99138 * 2 1 3 32 32 H 1.09004 * 109.46432 * 119.99490 * 2 1 3 33 33 H 1.09000 * 109.47037 * 30.00581 * 4 3 2 34 34 H 1.09008 * 109.46891 * 149.99789 * 4 3 2 35 35 H 0.96994 * 120.00849 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.46870 * 66.05277 * 15 13 3 37 37 H 1.09004 * 109.47178 * 306.05472 * 15 13 3 38 38 H 1.08995 * 109.63324 * 292.48923 * 17 16 15 39 39 H 1.09001 * 109.62997 * 171.90076 * 17 16 15 40 40 H 1.08998 * 109.38747 * 290.25701 * 18 17 16 41 41 H 1.09005 * 109.30793 * 170.50269 * 18 17 16 42 42 H 1.08000 * 120.08562 * 179.97438 * 22 20 19 43 43 H 1.08004 * 120.06283 * 180.02562 * 23 22 20 44 44 H 1.08994 * 109.26813 * 49.38718 * 27 16 15 45 45 H 1.09006 * 109.27004 * 168.88907 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2627 2.0716 -1.2689 5 6 3.6859 1.8347 -1.7038 6 1 4.3430 1.2307 -1.0957 7 6 4.1495 2.3901 -2.8775 8 7 3.3496 3.1261 -3.6178 9 14 5.9140 2.0970 -3.4163 10 1 6.6016 1.2420 -2.4157 11 1 5.9220 1.4183 -4.7371 12 1 6.6213 3.3983 -3.5242 13 6 2.2430 2.0166 1.1671 14 8 2.6468 3.1602 1.1671 15 6 1.9912 1.3065 2.4723 16 7 2.1696 2.2491 3.5848 17 6 1.1395 3.2997 3.5563 18 6 -0.2333 2.6313 3.4768 19 6 -0.3527 1.5727 4.5429 20 6 -1.6180 1.1033 4.8715 21 9 -2.7040 1.6013 4.2411 22 6 -1.7717 0.1289 5.8400 23 6 -0.6605 -0.3816 6.4841 24 6 0.5991 0.0858 6.1587 25 9 1.6845 -0.4144 6.7887 26 6 0.7547 1.0711 5.1914 27 6 2.1467 1.5506 4.8740 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8898 32 1 1.8933 -0.5138 0.8901 33 1 1.5818 1.6875 -2.0285 34 1 2.0956 3.1409 -1.1386 35 1 3.6756 3.5165 -4.4437 36 1 2.6954 0.4813 2.5786 37 1 0.9726 0.9187 2.4844 38 1 1.2886 3.9350 2.6833 39 1 1.2029 3.8993 4.4643 40 1 -0.3560 2.1724 2.4958 41 1 -1.0091 3.3827 3.6244 42 1 -2.7576 -0.2328 6.0925 43 1 -0.7762 -1.1432 7.2411 44 1 2.8236 0.6973 4.8328 45 1 2.4749 2.2326 5.6585 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267762337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:04 Heat of formation + Delta-G solvation = -107.167988 kcal Electronic energy + Delta-G solvation = -30376.510113 eV Core-core repulsion = 26029.291570 eV Total energy + Delta-G solvation = -4347.218543 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.00177 -49.96345 -41.74092 -40.29409 -38.09386 -36.84602 -34.91094 -33.47328 -32.57092 -31.63413 -30.32731 -29.74450 -28.27572 -25.55069 -25.09051 -24.49204 -23.83144 -23.15335 -21.16957 -19.66588 -18.74452 -18.63144 -18.33458 -18.13217 -17.77936 -17.38292 -17.18253 -16.75721 -16.43548 -16.32616 -15.80710 -15.61588 -15.43601 -15.16558 -14.91337 -14.70352 -14.59745 -14.32010 -14.27490 -13.96062 -13.90050 -13.60544 -13.37961 -13.28899 -13.09844 -12.86432 -12.71045 -12.67584 -12.59218 -12.47795 -12.39767 -12.16468 -11.91744 -11.78638 -11.64481 -10.64004 -10.53607 -9.98253 -9.53606 -9.48824 -9.33498 -8.21377 -6.35906 -0.14464 -0.07031 1.36444 1.39213 1.50913 1.85794 2.19088 2.24872 2.41043 2.85413 3.06270 3.08082 3.15173 3.39995 3.48052 3.69473 3.73264 3.93336 3.97307 4.01991 4.07925 4.19935 4.28412 4.38585 4.44564 4.45792 4.57139 4.62557 4.69060 4.81082 4.85130 4.89513 4.92983 4.95790 5.02427 5.03988 5.05661 5.12419 5.22845 5.34052 5.59245 5.72362 5.77028 5.88664 5.96217 6.08320 6.72334 6.82739 7.30335 7.53741 8.85700 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017908 B = 0.003095 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.133194 B = 9045.253296 C = 9512.074682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.265 3.735 5 C -0.540 4.540 6 H 0.053 0.947 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.267 1.267 11 H -0.269 1.269 12 H -0.282 1.282 13 C 0.500 3.500 14 O -0.575 6.575 15 C 0.044 3.956 16 N -0.521 5.521 17 C 0.054 3.946 18 C -0.114 4.114 19 C -0.091 4.091 20 C 0.078 3.922 21 F -0.141 7.141 22 C -0.116 4.116 23 C -0.116 4.116 24 C 0.091 3.909 25 F -0.134 7.134 26 C -0.125 4.125 27 C 0.095 3.905 28 H 0.095 0.905 29 H 0.051 0.949 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.020 0.980 34 H -0.004 1.004 35 H 0.266 0.734 36 H 0.116 0.884 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.173 0.827 43 H 0.176 0.824 44 H 0.104 0.896 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.677 -11.153 22.533 27.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.337 5.337 4 C 0.144 3.856 5 C -0.579 4.579 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.191 1.191 11 H -0.194 1.194 12 H -0.208 1.208 13 C 0.288 3.712 14 O -0.454 6.454 15 C -0.086 4.086 16 N -0.242 5.242 17 C -0.074 4.074 18 C -0.152 4.152 19 C -0.092 4.092 20 C 0.059 3.941 21 F -0.120 7.120 22 C -0.134 4.134 23 C -0.135 4.135 24 C 0.071 3.929 25 F -0.113 7.113 26 C -0.128 4.128 27 C -0.032 4.032 28 H 0.113 0.887 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.038 0.962 34 H 0.014 0.986 35 H 0.075 0.925 36 H 0.134 0.866 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.090 0.910 41 H 0.113 0.887 42 H 0.191 0.809 43 H 0.193 0.807 44 H 0.122 0.878 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.983 -10.229 22.282 26.865 hybrid contribution 0.020 0.076 -0.900 0.904 sum -10.963 -10.152 21.381 26.085 Atomic orbital electron populations 1.22148 0.94845 1.03407 1.01360 1.21707 0.95054 0.81651 1.03820 1.48271 1.64199 1.14990 1.06243 1.18664 0.95183 0.91456 0.80301 1.21744 0.97899 1.31814 1.06419 0.92916 1.25848 1.02328 0.94506 0.96471 1.70055 1.37672 1.34329 1.14821 0.85376 0.79120 0.77982 0.78374 1.19117 1.19423 1.20839 1.21007 0.77503 0.86711 0.86014 1.90621 1.46878 1.20218 1.87692 1.22105 1.03134 0.95235 0.88164 1.62224 1.48246 1.12281 1.01481 1.22253 0.87104 0.94276 1.03778 1.21001 1.00461 0.97198 0.96579 1.19387 0.91323 0.99350 0.99186 1.17827 0.82288 0.97787 0.96216 1.91493 1.52841 1.86528 1.81104 1.21230 1.01646 0.95587 0.94946 1.21249 0.89189 1.01534 1.01501 1.17663 0.84085 0.96146 0.95034 1.91514 1.53344 1.86021 1.80410 1.20302 0.97674 0.97470 0.97321 1.21242 0.91123 0.99711 0.91172 0.88658 0.92974 0.93966 0.90682 0.88678 0.96162 0.98562 0.92464 0.86591 0.90001 0.91106 0.88766 0.90987 0.88738 0.80945 0.80679 0.87796 0.87286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.06 10.18 71.98 0.73 -3.33 16 2 C 0.10 3.09 5.85 86.38 0.51 3.60 16 3 N -0.60 -25.79 2.46 -826.14 -2.03 -27.82 16 4 C 0.27 14.48 5.16 85.63 0.44 14.92 16 5 C -0.54 -31.54 9.39 25.60 0.24 -31.30 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.42 5.46 84.65 0.46 0.88 16 8 N -0.93 -56.81 13.29 21.45 0.28 -56.52 16 9 Si 0.97 45.54 29.54 68.60 2.03 47.56 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 13 C 0.50 20.92 7.33 87.66 0.64 21.56 16 14 O -0.57 -29.83 14.20 -3.04 -0.04 -29.87 16 15 C 0.04 1.30 3.25 85.56 0.28 1.58 16 16 N -0.52 -14.72 4.72 -905.75 -4.27 -18.99 16 17 C 0.05 1.49 5.58 86.22 0.48 1.97 16 18 C -0.11 -2.72 4.81 29.82 0.14 -2.58 16 19 C -0.09 -1.86 5.11 -19.81 -0.10 -1.96 16 20 C 0.08 1.42 7.23 22.43 0.16 1.58 16 21 F -0.14 -2.92 16.56 44.97 0.74 -2.17 16 22 C -0.12 -1.42 10.02 22.27 0.22 -1.19 16 23 C -0.12 -1.32 10.02 22.26 0.22 -1.10 16 24 C 0.09 1.45 7.22 22.44 0.16 1.61 16 25 F -0.13 -2.27 16.54 44.97 0.74 -1.53 16 26 C -0.12 -2.36 5.40 -19.83 -0.11 -2.47 16 27 C 0.10 1.97 5.21 85.58 0.45 2.41 16 28 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.05 1.28 6.78 -2.39 -0.02 1.26 16 30 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.07 2.45 8.07 -2.39 -0.02 2.43 16 32 H 0.10 2.30 6.61 -2.38 -0.02 2.29 16 33 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16 34 H 0.00 -0.24 7.42 -2.38 -0.02 -0.25 16 35 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 36 H 0.12 2.98 7.50 -2.39 -0.02 2.96 16 37 H 0.08 2.10 4.07 -2.38 -0.01 2.09 16 38 H 0.07 2.53 6.29 -2.39 -0.02 2.51 16 39 H 0.09 2.25 8.05 -2.39 -0.02 2.23 16 40 H 0.07 1.92 6.37 -2.39 -0.02 1.91 16 41 H 0.09 2.10 7.94 -2.38 -0.02 2.08 16 42 H 0.17 1.15 8.06 -2.91 -0.02 1.12 16 43 H 0.18 0.95 8.06 -2.91 -0.02 0.93 16 44 H 0.10 1.95 7.67 -2.39 -0.02 1.94 16 45 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 Total: -1.00 -74.73 367.34 3.41 -71.32 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 1.02 Total: 11.84 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 4.94 Total: 6.18 kcal Atomic # 7 Polarization: -97.32 SS G_CDS: -6.02 Total: -103.34 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -0.04 Total: -29.87 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 1.49 Total: -3.70 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -74.73 3.41 -71.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267762337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.847 kcal (2) G-P(sol) polarization free energy of solvation -74.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds