Wall clock time and date at job start Tue Mar 31 2020 20:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36066 * 117.00034 * 2 1 4 4 C 1.38563 * 120.00427 * 359.97438 * 3 2 1 5 5 C 1.38562 * 120.01506 * 180.02562 * 4 3 2 6 6 O 1.36066 * 119.98634 * 179.97438 * 5 4 3 7 7 C 1.42898 * 117.00004 * 359.97438 * 6 5 4 8 8 C 1.39113 * 120.02965 * 359.97438 * 5 4 3 9 9 O 1.36069 * 119.99459 * 179.97438 * 8 5 4 10 10 C 1.42904 * 116.99868 * 179.97438 * 9 8 5 11 11 C 1.38519 * 120.01640 * 359.74525 * 8 5 4 12 12 C 1.38742 * 119.97919 * 0.50654 * 11 8 5 13 13 N 1.40361 * 120.01288 * 179.76972 * 12 11 8 14 14 C 1.34771 * 119.99767 * 34.66284 * 13 12 11 15 15 O 1.21592 * 120.00298 * 355.56597 * 14 13 12 16 16 N 1.34783 * 119.99747 * 175.56731 * 14 13 12 17 17 C 1.46500 * 119.99699 * 359.97438 * 16 14 13 18 18 C 1.46499 * 119.99830 * 180.02562 * 16 14 13 19 19 H 1.08992 * 109.47146 * 0.02562 * 18 16 14 20 20 C 1.53007 * 109.46943 * 119.99768 * 18 16 14 21 21 C 1.50700 * 109.47004 * 239.99628 * 18 16 14 22 22 H 1.07998 * 119.99930 * 0.02562 * 21 18 16 23 23 C 1.37879 * 119.99899 * 180.02562 * 21 18 16 24 24 N 1.31511 * 119.99748 * 180.02562 * 23 21 18 25 25 Si 1.86800 * 119.99926 * 359.97438 * 23 21 18 26 26 H 1.48499 * 109.46984 * 90.00446 * 25 23 21 27 27 H 1.48498 * 109.46987 * 210.00566 * 25 23 21 28 28 H 1.48502 * 109.47104 * 330.00338 * 25 23 21 29 29 H 1.09004 * 109.46492 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46880 * 299.99471 * 1 2 3 31 31 H 1.08996 * 109.47208 * 59.99731 * 1 2 3 32 32 H 1.08004 * 119.99396 * 0.03404 * 4 3 2 33 33 H 1.09005 * 109.46983 * 60.00134 * 7 6 5 34 34 H 1.08996 * 109.47221 * 179.97438 * 7 6 5 35 35 H 1.08997 * 109.47451 * 300.00362 * 7 6 5 36 36 H 1.09002 * 109.47307 * 60.00289 * 10 9 8 37 37 H 1.09007 * 109.46873 * 180.02562 * 10 9 8 38 38 H 1.08994 * 109.47514 * 299.99773 * 10 9 8 39 39 H 1.07995 * 120.00795 * 180.27600 * 11 8 5 40 40 H 0.96997 * 119.99433 * 214.66738 * 13 12 11 41 41 H 1.08998 * 109.47335 * 270.00142 * 17 16 14 42 42 H 1.08993 * 109.47132 * 30.00862 * 17 16 14 43 43 H 1.09006 * 109.46878 * 150.00292 * 17 16 14 44 44 H 1.09000 * 109.46907 * 299.99488 * 20 18 16 45 45 H 1.08997 * 109.46916 * 59.99674 * 20 18 16 46 46 H 1.08998 * 109.46777 * 180.02562 * 20 18 16 47 47 H 0.97004 * 119.99782 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2124 0.0000 4 6 1.2921 2.3745 -0.0005 5 6 1.9210 3.6092 -0.0011 6 8 1.1794 4.7500 -0.0021 7 6 -0.2417 4.6001 -0.0032 8 6 3.3101 3.6830 -0.0005 9 8 3.9269 4.8959 -0.0016 10 6 5.3560 4.8970 -0.0004 11 6 4.0657 2.5220 0.0059 12 6 3.4367 1.2854 0.0011 13 7 4.2016 0.1086 0.0027 14 6 5.3708 0.0658 0.6717 15 8 5.8025 1.0690 1.2063 16 7 6.0615 -1.0890 0.7482 17 6 5.5411 -2.2978 0.1046 18 6 7.3321 -1.1357 1.4759 19 1 7.5534 -0.1496 1.8841 20 6 7.2287 -2.1485 2.6182 21 6 8.4346 -1.5498 0.5356 22 1 8.2112 -1.7571 -0.5004 23 6 9.7285 -1.6641 0.9981 24 7 10.6906 -2.0250 0.1774 25 14 10.1149 -1.3049 2.7901 26 1 9.9846 -2.5529 3.5843 27 1 11.5027 -0.7887 2.9033 28 1 9.1647 -0.2876 3.3071 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 0.2136 2.3179 -0.0004 33 1 -0.5498 4.0513 0.8868 34 1 -0.7108 5.5839 -0.0035 35 1 -0.5484 4.0506 -0.8931 36 1 5.7205 4.3823 -0.8894 37 1 5.7185 5.9250 -0.0010 38 1 5.7190 4.3846 0.8905 39 1 5.1441 2.5795 0.0108 40 1 3.8887 -0.6738 -0.4777 41 1 4.9097 -2.8408 0.8079 42 1 4.9541 -2.0194 -0.7706 43 1 6.3724 -2.9326 -0.2024 44 1 6.4314 -1.8489 3.2983 45 1 7.0071 -3.1346 2.2104 46 1 8.1740 -2.1828 3.1599 47 1 11.6010 -2.1050 0.5027 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268909411.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:26 Heat of formation + Delta-G solvation = -81.428726 kcal Electronic energy + Delta-G solvation = -30566.906079 eV Core-core repulsion = 26331.891189 eV Total energy + Delta-G solvation = -4235.014889 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.03343 -39.69741 -38.99478 -38.34860 -36.49529 -35.33800 -34.00532 -32.61631 -30.52167 -29.76162 -29.06919 -28.21774 -27.20891 -26.35588 -25.95611 -25.11934 -22.87948 -22.03613 -21.17690 -19.24841 -19.00551 -18.07879 -17.50913 -17.07170 -16.75493 -16.37079 -16.13632 -15.85924 -15.65290 -15.19518 -15.12704 -14.97199 -14.80437 -14.48555 -14.06086 -13.48149 -13.37317 -13.09368 -12.80930 -12.75610 -12.51499 -12.40516 -12.23087 -11.93107 -11.81178 -11.70780 -11.65757 -11.56237 -11.30923 -11.18238 -11.14007 -10.72901 -10.57041 -10.15427 -9.65647 -9.53673 -9.46601 -9.24582 -8.64427 -8.39449 -7.78639 -7.19242 -6.15753 -4.16441 1.24750 1.42814 3.00133 3.11706 3.23390 3.23576 3.37110 3.40160 3.42830 3.51379 3.89993 4.34565 4.38130 4.64181 4.78247 4.85018 4.92576 4.95020 5.08922 5.17012 5.17606 5.22686 5.26568 5.28666 5.42482 5.48423 5.59847 5.66799 5.76861 5.88432 5.92088 6.10955 6.21956 6.26648 6.33927 6.47666 6.48915 6.79113 6.83187 6.88973 7.02284 7.23367 7.34321 7.54572 7.62385 7.63551 8.35673 8.50533 8.84741 9.08603 9.45465 10.96880 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.015396 B = 0.003271 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.260049 B = 8558.596283 C = 9817.710753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.313 6.313 3 C 0.095 3.905 4 C -0.241 4.241 5 C 0.110 3.890 6 O -0.304 6.304 7 C 0.027 3.973 8 C 0.086 3.914 9 O -0.308 6.308 10 C 0.025 3.975 11 C -0.139 4.139 12 C 0.158 3.842 13 N -0.683 5.683 14 C 0.702 3.298 15 O -0.585 6.585 16 N -0.597 5.597 17 C 0.083 3.917 18 C 0.245 3.755 19 H 0.064 0.936 20 C -0.161 4.161 21 C -0.529 4.529 22 H 0.079 0.921 23 C 0.076 3.924 24 N -0.895 5.895 25 Si 0.883 3.117 26 H -0.277 1.277 27 H -0.294 1.294 28 H -0.262 1.262 29 H 0.099 0.901 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.141 0.859 33 H 0.051 0.949 34 H 0.098 0.902 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.097 0.903 38 H 0.062 0.938 39 H 0.168 0.832 40 H 0.408 0.592 41 H 0.045 0.955 42 H 0.050 0.950 43 H 0.090 0.910 44 H 0.033 0.967 45 H 0.055 0.945 46 H 0.050 0.950 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.785 6.945 -1.643 23.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.227 6.227 3 C 0.047 3.953 4 C -0.261 4.261 5 C 0.063 3.937 6 O -0.217 6.217 7 C -0.068 4.068 8 C 0.040 3.960 9 O -0.222 6.222 10 C -0.070 4.070 11 C -0.160 4.160 12 C 0.061 3.939 13 N -0.333 5.333 14 C 0.404 3.596 15 O -0.464 6.464 16 N -0.331 5.331 17 C -0.061 4.061 18 C 0.143 3.857 19 H 0.082 0.918 20 C -0.219 4.219 21 C -0.567 4.567 22 H 0.097 0.903 23 C -0.127 4.127 24 N -0.532 5.532 25 Si 0.713 3.287 26 H -0.204 1.204 27 H -0.222 1.222 28 H -0.187 1.187 29 H 0.117 0.883 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.159 0.841 33 H 0.070 0.930 34 H 0.116 0.884 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.116 0.884 38 H 0.081 0.919 39 H 0.185 0.815 40 H 0.245 0.755 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.108 0.892 44 H 0.052 0.948 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.121 7.731 -1.244 23.466 hybrid contribution -0.121 -0.680 0.645 0.945 sum -22.242 7.051 -0.599 23.341 Atomic orbital electron populations 1.23006 0.78700 1.03812 1.01009 1.86067 1.21031 1.26109 1.89482 1.18306 0.90068 0.84354 1.02564 1.20756 1.00013 0.90490 1.14822 1.17835 0.88053 0.85265 1.02512 1.86198 1.18221 1.28094 1.89233 1.23017 0.79284 1.03616 1.00905 1.17948 0.88598 0.85332 1.04112 1.86119 1.21329 1.25327 1.89410 1.23097 0.78134 1.03581 1.02223 1.21255 1.02132 0.88853 1.03779 1.16446 0.86032 0.86511 1.04870 1.42671 1.21903 1.14000 1.54700 1.15885 0.79845 0.84552 0.79349 1.90822 1.69564 1.33551 1.52436 1.47146 1.23471 1.07158 1.55315 1.21610 1.00042 0.88628 0.95830 1.19223 0.79642 0.97090 0.89753 0.91782 1.22464 0.99577 1.01041 0.98845 1.21177 0.90862 1.47323 0.97335 0.90286 1.24848 0.95974 0.94215 0.97626 1.69873 1.00982 1.47135 1.35258 0.86921 0.77258 0.78977 0.85568 1.20405 1.22159 1.18722 0.88267 0.92899 0.92914 0.84098 0.92994 0.88359 0.92987 0.92637 0.88443 0.91899 0.81494 0.75478 0.93600 0.93137 0.89166 0.94801 0.92575 0.93127 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.75 10.05 -19.95 -0.20 -3.95 16 3 C 0.09 1.30 6.70 -39.11 -0.26 1.04 16 4 C -0.24 -2.93 8.02 -39.34 -0.32 -3.24 16 5 C 0.11 1.55 6.70 -39.14 -0.26 1.29 16 6 O -0.30 -3.94 10.28 -34.62 -0.36 -4.29 16 7 C 0.03 0.21 9.81 101.05 0.99 1.20 16 8 C 0.09 1.37 6.70 -39.15 -0.26 1.11 16 9 O -0.31 -4.79 10.28 -34.63 -0.36 -5.15 16 10 C 0.02 0.32 9.81 101.05 0.99 1.31 16 11 C -0.14 -2.36 7.69 -39.29 -0.30 -2.66 16 12 C 0.16 2.58 6.33 -83.41 -0.53 2.06 16 13 N -0.68 -11.46 5.07 -14.07 -0.07 -11.53 16 14 C 0.70 14.49 8.13 -86.92 -0.71 13.78 16 15 O -0.59 -13.80 13.09 5.28 0.07 -13.73 16 16 N -0.60 -12.35 2.75 -181.01 -0.50 -12.85 16 17 C 0.08 1.35 9.24 59.85 0.55 1.90 16 18 C 0.25 5.88 2.23 -69.08 -0.15 5.73 16 19 H 0.06 1.71 5.95 -51.93 -0.31 1.40 16 20 C -0.16 -3.47 8.67 37.16 0.32 -3.15 16 21 C -0.53 -14.42 8.57 -34.44 -0.30 -14.71 16 22 H 0.08 2.31 7.58 -52.49 -0.40 1.91 16 23 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 24 N -0.90 -26.69 13.96 55.43 0.77 -25.91 16 25 Si 0.88 21.69 24.37 -169.99 -4.14 17.55 16 26 H -0.28 -6.52 6.87 56.52 0.39 -6.13 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.26 -6.38 6.53 56.52 0.37 -6.01 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 31 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 32 H 0.14 1.24 4.52 -52.48 -0.24 1.00 16 33 H 0.05 0.34 7.66 -51.93 -0.40 -0.05 16 34 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 36 H 0.05 0.70 7.67 -51.93 -0.40 0.30 16 37 H 0.10 0.98 8.14 -51.92 -0.42 0.56 16 38 H 0.06 0.88 7.65 -51.93 -0.40 0.48 16 39 H 0.17 3.10 4.42 -52.49 -0.23 2.87 16 40 H 0.41 5.83 6.26 -40.82 -0.26 5.58 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.68 6.30 -51.93 -0.33 0.35 16 43 H 0.09 1.59 7.02 -51.93 -0.36 1.23 16 44 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 1.12 7.67 -51.93 -0.40 0.72 16 46 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 47 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 372.18 15.07 5.61 5.61 Total: -1.00 -34.51 372.18 -4.88 -39.39 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -6.37 Total: 5.95 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: 0.67 Total: 8.92 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: 0.20 Total: -50.29 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.84 Total: -27.12 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.14 Total: 17.55 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.51 -4.88 -39.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268909411.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.039 kcal (2) G-P(sol) polarization free energy of solvation -34.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds