Wall clock time and date at job start Tue Mar 31 2020 20:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36066 * 117.00034 * 2 1 4 4 C 1.38563 * 120.00427 * 359.97438 * 3 2 1 5 5 C 1.38562 * 120.01506 * 180.02562 * 4 3 2 6 6 O 1.36066 * 119.98634 * 179.97438 * 5 4 3 7 7 C 1.42898 * 117.00004 * 359.97438 * 6 5 4 8 8 C 1.39113 * 120.02965 * 359.97438 * 5 4 3 9 9 O 1.36069 * 119.99459 * 179.97438 * 8 5 4 10 10 C 1.42904 * 116.99868 * 179.97438 * 9 8 5 11 11 C 1.38519 * 120.01640 * 359.74525 * 8 5 4 12 12 C 1.38742 * 119.97919 * 0.50654 * 11 8 5 13 13 N 1.40361 * 120.01288 * 179.76972 * 12 11 8 14 14 C 1.34771 * 119.99767 * 34.66284 * 13 12 11 15 15 O 1.21592 * 120.00298 * 355.56597 * 14 13 12 16 16 N 1.34783 * 119.99747 * 175.56731 * 14 13 12 17 17 C 1.46500 * 119.99699 * 359.97438 * 16 14 13 18 18 C 1.46499 * 119.99830 * 180.02562 * 16 14 13 19 19 H 1.08992 * 109.47146 * 0.02562 * 18 16 14 20 20 C 1.53007 * 109.46943 * 119.99768 * 18 16 14 21 21 C 1.50700 * 109.47004 * 239.99628 * 18 16 14 22 22 H 1.07998 * 119.99930 * 0.02562 * 21 18 16 23 23 C 1.37879 * 119.99899 * 180.02562 * 21 18 16 24 24 N 1.31511 * 119.99748 * 180.02562 * 23 21 18 25 25 Si 1.86800 * 119.99926 * 359.97438 * 23 21 18 26 26 H 1.48499 * 109.46984 * 90.00446 * 25 23 21 27 27 H 1.48498 * 109.46987 * 210.00566 * 25 23 21 28 28 H 1.48502 * 109.47104 * 330.00338 * 25 23 21 29 29 H 1.09004 * 109.46492 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46880 * 299.99471 * 1 2 3 31 31 H 1.08996 * 109.47208 * 59.99731 * 1 2 3 32 32 H 1.08004 * 119.99396 * 0.03404 * 4 3 2 33 33 H 1.09005 * 109.46983 * 60.00134 * 7 6 5 34 34 H 1.08996 * 109.47221 * 179.97438 * 7 6 5 35 35 H 1.08997 * 109.47451 * 300.00362 * 7 6 5 36 36 H 1.09002 * 109.47307 * 60.00289 * 10 9 8 37 37 H 1.09007 * 109.46873 * 180.02562 * 10 9 8 38 38 H 1.08994 * 109.47514 * 299.99773 * 10 9 8 39 39 H 1.07995 * 120.00795 * 180.27600 * 11 8 5 40 40 H 0.96997 * 119.99433 * 214.66738 * 13 12 11 41 41 H 1.08998 * 109.47335 * 270.00142 * 17 16 14 42 42 H 1.08993 * 109.47132 * 30.00862 * 17 16 14 43 43 H 1.09006 * 109.46878 * 150.00292 * 17 16 14 44 44 H 1.09000 * 109.46907 * 299.99488 * 20 18 16 45 45 H 1.08997 * 109.46916 * 59.99674 * 20 18 16 46 46 H 1.08998 * 109.46777 * 180.02562 * 20 18 16 47 47 H 0.97004 * 119.99782 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2124 0.0000 4 6 1.2921 2.3745 -0.0005 5 6 1.9210 3.6092 -0.0011 6 8 1.1794 4.7500 -0.0021 7 6 -0.2417 4.6001 -0.0032 8 6 3.3101 3.6830 -0.0005 9 8 3.9269 4.8959 -0.0016 10 6 5.3560 4.8970 -0.0004 11 6 4.0657 2.5220 0.0059 12 6 3.4367 1.2854 0.0011 13 7 4.2016 0.1086 0.0027 14 6 5.3708 0.0658 0.6717 15 8 5.8025 1.0690 1.2063 16 7 6.0615 -1.0890 0.7482 17 6 5.5411 -2.2978 0.1046 18 6 7.3321 -1.1357 1.4759 19 1 7.5534 -0.1496 1.8841 20 6 7.2287 -2.1485 2.6182 21 6 8.4346 -1.5498 0.5356 22 1 8.2112 -1.7571 -0.5004 23 6 9.7285 -1.6641 0.9981 24 7 10.6906 -2.0250 0.1774 25 14 10.1149 -1.3049 2.7901 26 1 9.9846 -2.5529 3.5843 27 1 11.5027 -0.7887 2.9033 28 1 9.1647 -0.2876 3.3071 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 0.2136 2.3179 -0.0004 33 1 -0.5498 4.0513 0.8868 34 1 -0.7108 5.5839 -0.0035 35 1 -0.5484 4.0506 -0.8931 36 1 5.7205 4.3823 -0.8894 37 1 5.7185 5.9250 -0.0010 38 1 5.7190 4.3846 0.8905 39 1 5.1441 2.5795 0.0108 40 1 3.8887 -0.6738 -0.4777 41 1 4.9097 -2.8408 0.8079 42 1 4.9541 -2.0194 -0.7706 43 1 6.3724 -2.9326 -0.2024 44 1 6.4314 -1.8489 3.2983 45 1 7.0071 -3.1346 2.2104 46 1 8.1740 -2.1828 3.1599 47 1 11.6010 -2.1050 0.5027 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268909411.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:25 Heat of formation + Delta-G solvation = -106.758720 kcal Electronic energy + Delta-G solvation = -30568.004470 eV Core-core repulsion = 26331.891189 eV Total energy + Delta-G solvation = -4236.113280 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.19043 -41.08842 -39.97877 -39.36381 -37.86837 -36.82152 -35.43406 -34.52135 -32.25511 -30.79144 -30.24258 -28.96503 -28.07745 -27.74393 -27.17487 -26.88865 -24.23448 -23.10519 -22.65852 -20.78964 -20.09165 -19.34940 -18.94704 -18.51158 -18.10668 -17.66463 -17.25384 -17.13984 -16.66289 -16.58461 -16.39543 -16.12463 -15.83717 -15.60989 -15.43890 -15.14358 -14.66421 -14.43253 -14.27081 -14.02012 -13.85485 -13.65055 -13.61612 -13.37388 -13.07341 -13.03055 -12.67243 -12.62294 -12.51754 -12.41393 -12.26904 -12.10271 -12.03342 -11.68482 -11.57408 -11.37385 -11.03065 -10.78683 -10.62563 -9.62717 -9.35631 -8.34601 -8.32210 -6.38579 0.12726 0.31178 1.27400 1.37064 1.45842 1.62664 2.07183 2.21443 2.28703 2.33116 2.39634 2.64877 2.96917 3.02043 3.68559 3.91153 4.10706 4.14878 4.29902 4.33088 4.34840 4.38963 4.43834 4.46050 4.46556 4.49075 4.55659 4.57384 4.58801 4.69180 4.73350 4.74965 4.79302 4.84597 4.92793 5.04273 5.06431 5.24501 5.32406 5.50553 5.59784 5.68377 5.93901 6.05981 6.27100 6.32659 6.59395 6.63240 6.97433 7.25233 7.54340 8.81729 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.015396 B = 0.003271 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.260049 B = 8558.596283 C = 9817.710753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.324 6.324 3 C 0.111 3.889 4 C -0.229 4.229 5 C 0.116 3.884 6 O -0.324 6.324 7 C 0.014 3.986 8 C 0.060 3.940 9 O -0.320 6.320 10 C 0.026 3.974 11 C -0.152 4.152 12 C 0.123 3.877 13 N -0.666 5.666 14 C 0.696 3.304 15 O -0.623 6.623 16 N -0.606 5.606 17 C 0.080 3.920 18 C 0.250 3.750 19 H 0.034 0.966 20 C -0.153 4.153 21 C -0.526 4.526 22 H 0.047 0.953 23 C 0.025 3.975 24 N -0.939 5.939 25 Si 0.940 3.060 26 H -0.253 1.253 27 H -0.296 1.296 28 H -0.262 1.262 29 H 0.121 0.879 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.181 0.819 33 H 0.067 0.933 34 H 0.119 0.881 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.127 0.873 38 H 0.044 0.956 39 H 0.141 0.859 40 H 0.419 0.581 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.053 0.947 45 H 0.071 0.929 46 H 0.043 0.957 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.583 6.564 -0.819 27.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.238 6.238 3 C 0.063 3.937 4 C -0.249 4.249 5 C 0.069 3.931 6 O -0.238 6.238 7 C -0.080 4.080 8 C 0.014 3.986 9 O -0.234 6.234 10 C -0.069 4.069 11 C -0.173 4.173 12 C 0.027 3.973 13 N -0.317 5.317 14 C 0.398 3.602 15 O -0.504 6.504 16 N -0.340 5.340 17 C -0.062 4.062 18 C 0.146 3.854 19 H 0.052 0.948 20 C -0.211 4.211 21 C -0.564 4.564 22 H 0.065 0.935 23 C -0.174 4.174 24 N -0.579 5.579 25 Si 0.767 3.233 26 H -0.179 1.179 27 H -0.223 1.223 28 H -0.187 1.187 29 H 0.139 0.861 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.198 0.802 33 H 0.085 0.915 34 H 0.137 0.863 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.145 0.855 38 H 0.063 0.937 39 H 0.158 0.842 40 H 0.259 0.741 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.072 0.928 45 H 0.090 0.910 46 H 0.062 0.938 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -26.001 7.321 -0.446 27.016 hybrid contribution 0.836 -0.499 0.266 1.010 sum -25.164 6.822 -0.180 26.073 Atomic orbital electron populations 1.23421 0.75985 1.05923 1.02482 1.86070 1.23768 1.25014 1.88968 1.18263 0.89131 0.85686 1.00639 1.21080 1.01737 0.88949 1.13102 1.17991 0.87611 0.86476 1.01019 1.86185 1.20923 1.27833 1.88839 1.23429 0.76405 1.05709 1.02501 1.18175 0.89778 0.84964 1.05645 1.86084 1.22184 1.25524 1.89643 1.23180 0.77374 1.05139 1.01176 1.21049 1.01109 0.90068 1.05063 1.16644 0.87343 0.85811 1.07510 1.42360 1.20661 1.14777 1.53866 1.16051 0.80757 0.83914 0.79500 1.90798 1.70728 1.34812 1.54066 1.47090 1.22631 1.08599 1.55637 1.21810 0.99963 0.86972 0.97445 1.18877 0.80337 0.96089 0.90110 0.94838 1.22317 0.99944 1.00897 0.97957 1.21371 0.92198 1.46273 0.96583 0.93523 1.25603 0.95858 0.94185 1.01742 1.69997 1.01511 1.49012 1.37347 0.85999 0.76662 0.79682 0.80965 1.17864 1.22348 1.18688 0.86081 0.91651 0.91061 0.80180 0.91462 0.86298 0.91110 0.92980 0.85467 0.93732 0.84166 0.74113 0.90652 0.90405 0.90950 0.92783 0.91013 0.93838 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.32 -6.73 10.05 -94.30 -0.95 -7.68 16 3 C 0.11 2.83 6.70 22.58 0.15 2.98 16 4 C -0.23 -4.90 8.02 22.42 0.18 -4.72 16 5 C 0.12 3.11 6.70 22.56 0.15 3.26 16 6 O -0.32 -7.71 10.28 -80.27 -0.82 -8.54 16 7 C 0.01 0.16 9.81 113.37 1.11 1.27 16 8 C 0.06 1.96 6.70 22.55 0.15 2.11 16 9 O -0.32 -10.28 10.28 -80.31 -0.83 -11.10 16 10 C 0.03 0.72 9.81 113.37 1.11 1.83 16 11 C -0.15 -5.37 7.69 22.46 0.17 -5.20 16 12 C 0.12 4.01 6.33 38.12 0.24 4.25 16 13 N -0.67 -22.28 5.07 -316.69 -1.61 -23.89 16 14 C 0.70 29.34 8.13 179.05 1.46 30.80 16 15 O -0.62 -30.78 13.09 -4.01 -0.05 -30.84 16 16 N -0.61 -25.20 2.75 -844.84 -2.33 -27.52 16 17 C 0.08 2.53 9.24 127.77 1.18 3.71 16 18 C 0.25 12.13 2.23 44.25 0.10 12.23 16 19 H 0.03 1.84 5.95 -2.39 -0.01 1.83 16 20 C -0.15 -6.39 8.67 71.98 0.62 -5.76 16 21 C -0.53 -29.55 8.57 25.60 0.22 -29.33 16 22 H 0.05 2.86 7.58 -2.91 -0.02 2.83 16 23 C 0.02 1.44 5.45 84.66 0.46 1.90 16 24 N -0.94 -57.60 13.96 21.45 0.30 -57.30 16 25 Si 0.94 45.15 24.37 68.60 1.67 46.83 16 26 H -0.25 -11.14 6.87 99.48 0.68 -10.46 16 27 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 28 H -0.26 -12.50 6.53 99.48 0.65 -11.85 16 29 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.54 7.66 -2.39 -0.02 0.52 16 31 H 0.07 0.50 7.66 -2.39 -0.02 0.48 16 32 H 0.18 2.28 4.52 -2.91 -0.01 2.27 16 33 H 0.07 0.60 7.66 -2.38 -0.02 0.58 16 34 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 0.58 7.66 -2.39 -0.02 0.56 16 36 H 0.05 1.43 7.67 -2.39 -0.02 1.41 16 37 H 0.13 2.61 8.14 -2.38 -0.02 2.59 16 38 H 0.04 1.37 7.65 -2.39 -0.02 1.35 16 39 H 0.14 5.68 4.42 -2.91 -0.01 5.66 16 40 H 0.42 11.50 6.26 -92.71 -0.58 10.92 16 41 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.08 1.98 6.30 -2.39 -0.02 1.96 16 43 H 0.07 2.55 7.02 -2.38 -0.02 2.53 16 44 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.07 2.73 7.67 -2.39 -0.02 2.71 16 46 H 0.04 1.87 3.27 -2.39 -0.01 1.86 16 47 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -79.12 372.18 4.17 -74.95 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: 0.36 Total: 24.50 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: 8.42 Total: 20.59 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -3.63 Total: -108.71 kcal Atomic # 8 Polarization: -55.50 SS G_CDS: -2.65 Total: -58.15 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.67 Total: 46.83 kcal Total: -79.12 4.17 -74.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268909411.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.810 kcal (2) G-P(sol) polarization free energy of solvation -79.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds