Wall clock time and date at job start Tue Mar 31 2020 20:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36050 * 117.00078 * 2 1 4 4 C 1.38572 * 120.00455 * 0.02562 * 3 2 1 5 5 C 1.38571 * 120.01193 * 179.72493 * 4 3 2 6 6 O 1.36062 * 119.98452 * 180.22623 * 5 4 3 7 7 C 1.42902 * 116.99844 * 0.02562 * 6 5 4 8 8 C 1.39120 * 120.02798 * 0.25070 * 5 4 3 9 9 O 1.36063 * 119.98736 * 179.97438 * 8 5 4 10 10 C 1.42901 * 117.00024 * 179.97438 * 9 8 5 11 11 C 1.38506 * 120.01659 * 0.02562 * 8 5 4 12 12 C 1.38745 * 119.98713 * 359.97438 * 11 8 5 13 13 N 1.40354 * 120.01519 * 179.97438 * 12 11 8 14 14 C 1.34772 * 120.00308 * 325.34019 * 13 12 11 15 15 O 1.21601 * 119.99894 * 4.43222 * 14 13 12 16 16 N 1.34771 * 120.00289 * 184.43749 * 14 13 12 17 17 C 1.46503 * 120.00084 * 359.97438 * 16 14 13 18 18 C 1.46502 * 120.00110 * 179.97438 * 16 14 13 19 19 H 1.08996 * 109.47368 * 0.02562 * 18 16 14 20 20 C 1.52997 * 109.47365 * 239.99990 * 18 16 14 21 21 C 1.50709 * 109.46891 * 120.00051 * 18 16 14 22 22 H 1.07995 * 119.99734 * 0.02562 * 21 18 16 23 23 C 1.37877 * 119.99850 * 180.02562 * 21 18 16 24 24 N 1.31512 * 119.99869 * 359.97438 * 23 21 18 25 25 Si 1.86794 * 119.99651 * 180.02562 * 23 21 18 26 26 H 1.48504 * 109.47427 * 89.99875 * 25 23 21 27 27 H 1.48505 * 109.46895 * 209.99972 * 25 23 21 28 28 H 1.48501 * 109.47535 * 329.99761 * 25 23 21 29 29 H 1.08994 * 109.47220 * 299.99592 * 1 2 3 30 30 H 1.08999 * 109.47389 * 60.00057 * 1 2 3 31 31 H 1.09005 * 109.47073 * 180.02562 * 1 2 3 32 32 H 1.07999 * 119.99496 * 359.97438 * 4 3 2 33 33 H 1.09003 * 109.46899 * 179.97438 * 7 6 5 34 34 H 1.09004 * 109.47057 * 299.98939 * 7 6 5 35 35 H 1.09001 * 109.47647 * 59.99450 * 7 6 5 36 36 H 1.09005 * 109.46581 * 60.00160 * 10 9 8 37 37 H 1.08999 * 109.47432 * 179.97438 * 10 9 8 38 38 H 1.08998 * 109.47422 * 300.00712 * 10 9 8 39 39 H 1.08001 * 120.00833 * 179.97438 * 11 8 5 40 40 H 0.97001 * 119.99643 * 145.33657 * 13 12 11 41 41 H 1.08998 * 109.47068 * 89.99690 * 17 16 14 42 42 H 1.09001 * 109.47429 * 210.00369 * 17 16 14 43 43 H 1.09005 * 109.46937 * 330.00057 * 17 16 14 44 44 H 1.08998 * 109.47240 * 59.99887 * 20 18 16 45 45 H 1.08996 * 109.47355 * 180.02562 * 20 18 16 46 46 H 1.09005 * 109.47090 * 300.00207 * 20 18 16 47 47 H 0.97001 * 119.99775 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2122 0.0000 4 6 1.2921 2.3744 0.0005 5 6 1.9210 3.6092 0.0063 6 8 1.1796 4.7500 0.0115 7 6 -0.2416 4.6000 0.0112 8 6 3.3103 3.6828 0.0063 9 8 3.9270 4.8957 0.0114 10 6 5.3560 4.8969 0.0116 11 6 4.0657 2.5219 0.0000 12 6 3.4366 1.2853 -0.0058 13 7 4.2016 0.1085 -0.0128 14 6 5.3730 0.0701 -0.6780 15 8 5.8066 1.0769 -1.2043 16 7 6.0639 -1.0841 -0.7600 17 6 5.5418 -2.2970 -0.1255 18 6 7.3371 -1.1259 -1.4836 19 1 7.5604 -0.1369 -1.8835 20 6 7.2377 -2.1308 -2.6330 21 6 8.4363 -1.5466 -0.5422 22 1 8.2091 -1.7616 0.4914 23 6 9.7319 -1.6568 -1.0007 24 7 10.0084 -1.3954 -2.2596 25 14 11.0941 -2.1788 0.1659 26 1 11.2242 -3.6580 0.1449 27 1 12.3758 -1.5630 -0.2625 28 1 10.7656 -1.7304 1.5430 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2136 2.3179 0.0005 33 1 -0.7107 5.5839 0.0161 34 1 -0.5492 4.0549 -0.8812 35 1 -0.5488 4.0469 0.8988 36 1 5.7198 4.3870 -0.8805 37 1 5.7185 5.9248 0.0155 38 1 5.7197 4.3796 0.8994 39 1 5.1442 2.5793 -0.0005 40 1 3.8870 -0.6771 0.4613 41 1 4.9124 -2.8355 -0.8340 42 1 6.3722 -2.9337 0.1797 43 1 4.9523 -2.0242 0.7498 44 1 6.4427 -1.8267 -3.3138 45 1 8.1851 -2.1623 -3.1711 46 1 7.0146 -3.1198 -2.2327 47 1 10.9199 -1.4733 -2.5822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268909415.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:30 Heat of formation + Delta-G solvation = -90.146954 kcal Electronic energy + Delta-G solvation = -30492.068702 eV Core-core repulsion = 26256.675762 eV Total energy + Delta-G solvation = -4235.392940 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.96920 -39.57223 -38.93962 -38.29836 -36.36323 -35.17952 -33.90727 -32.67438 -29.86309 -29.71253 -28.71745 -28.16207 -27.16853 -26.25428 -25.83306 -25.20487 -22.75056 -21.98085 -21.05268 -19.18386 -18.96048 -18.01602 -17.36986 -16.99927 -16.58651 -16.25437 -16.03483 -15.69644 -15.61042 -15.15553 -15.01266 -14.79226 -14.74260 -14.35100 -14.11075 -13.41406 -13.18131 -13.05675 -12.71715 -12.54132 -12.48017 -12.35217 -11.77655 -11.72407 -11.63068 -11.59370 -11.51290 -11.24538 -11.13485 -11.05803 -10.83838 -10.70412 -10.49333 -10.25084 -10.16459 -9.47227 -9.33121 -9.10872 -8.43840 -8.32287 -7.63449 -7.12642 -6.07207 -4.15171 1.30209 1.48260 3.08937 3.17019 3.26141 3.29620 3.33754 3.37291 3.48053 3.60181 4.00257 4.35972 4.56084 4.68714 4.82507 4.88510 4.96066 4.98363 5.13421 5.21543 5.23915 5.26225 5.30771 5.32415 5.46701 5.53966 5.65799 5.72162 5.81709 5.94119 6.00808 6.17805 6.32712 6.54794 6.71529 6.82603 6.89098 7.02853 7.07987 7.18713 7.29655 7.48330 7.67600 7.69233 7.84905 8.08059 8.21932 8.65871 8.85983 9.23039 9.51913 10.97982 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.015478 B = 0.003126 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.535747 B = 8955.518139 C =10194.908483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.313 6.313 3 C 0.093 3.907 4 C -0.240 4.240 5 C 0.108 3.892 6 O -0.304 6.304 7 C 0.027 3.973 8 C 0.087 3.913 9 O -0.308 6.308 10 C 0.025 3.975 11 C -0.140 4.140 12 C 0.161 3.839 13 N -0.685 5.685 14 C 0.698 3.302 15 O -0.584 6.584 16 N -0.603 5.603 17 C 0.085 3.915 18 C 0.273 3.727 19 H 0.065 0.935 20 C -0.147 4.147 21 C -0.526 4.526 22 H 0.059 0.941 23 C 0.065 3.935 24 N -0.887 5.887 25 Si 0.898 3.102 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.275 1.275 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.099 0.901 32 H 0.141 0.859 33 H 0.098 0.902 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.063 0.937 37 H 0.097 0.903 38 H 0.054 0.946 39 H 0.168 0.832 40 H 0.406 0.594 41 H 0.044 0.956 42 H 0.085 0.915 43 H 0.046 0.954 44 H 0.011 0.989 45 H 0.094 0.906 46 H 0.029 0.971 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.468 5.500 5.966 22.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.227 6.227 3 C 0.045 3.955 4 C -0.260 4.260 5 C 0.062 3.938 6 O -0.218 6.218 7 C -0.068 4.068 8 C 0.041 3.959 9 O -0.222 6.222 10 C -0.070 4.070 11 C -0.161 4.161 12 C 0.064 3.936 13 N -0.335 5.335 14 C 0.400 3.600 15 O -0.462 6.462 16 N -0.337 5.337 17 C -0.059 4.059 18 C 0.173 3.827 19 H 0.083 0.917 20 C -0.205 4.205 21 C -0.565 4.565 22 H 0.078 0.922 23 C -0.137 4.137 24 N -0.525 5.525 25 Si 0.726 3.274 26 H -0.206 1.206 27 H -0.211 1.211 28 H -0.200 1.200 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.117 0.883 32 H 0.159 0.841 33 H 0.116 0.884 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.115 0.885 38 H 0.073 0.927 39 H 0.185 0.815 40 H 0.243 0.757 41 H 0.062 0.938 42 H 0.103 0.897 43 H 0.065 0.935 44 H 0.030 0.970 45 H 0.112 0.888 46 H 0.048 0.952 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.826 6.333 5.408 21.504 hybrid contribution 0.268 -1.074 0.828 1.382 sum -19.558 5.259 6.236 21.191 Atomic orbital electron populations 1.22999 0.78760 1.03766 1.00982 1.86064 1.20978 1.26144 1.89510 1.18305 0.90096 0.84328 1.02753 1.20751 0.99969 0.90503 1.14816 1.17827 0.88044 0.85242 1.02734 1.86195 1.18181 1.28121 1.89283 1.23012 0.79336 1.03571 1.00885 1.17946 0.88586 0.85328 1.04087 1.86112 1.21322 1.25360 1.89420 1.23092 0.78150 1.03527 1.02247 1.21257 1.02130 0.88859 1.03856 1.16462 0.86037 0.86631 1.04510 1.42745 1.21873 1.13626 1.55267 1.15964 0.79796 0.84844 0.79368 1.90826 1.69493 1.33318 1.52609 1.47583 1.24019 1.06464 1.55613 1.21544 0.99720 0.88874 0.95801 1.18890 0.76675 0.97904 0.89260 0.91698 1.22100 1.01649 0.98115 0.98671 1.21340 0.92143 1.46901 0.96136 0.92245 1.24880 0.98474 0.95131 0.95252 1.69882 1.20083 1.48495 1.14065 0.86496 0.81295 0.78564 0.81025 1.20644 1.21113 1.19953 0.92967 0.92899 0.88308 0.84147 0.88395 0.92992 0.93039 0.91807 0.88484 0.92726 0.81502 0.75658 0.93776 0.89682 0.93512 0.96975 0.88773 0.95189 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -3.91 10.04 -19.90 -0.20 -4.11 16 3 C 0.09 1.33 6.70 -39.11 -0.26 1.06 16 4 C -0.24 -3.03 8.02 -39.34 -0.32 -3.35 16 5 C 0.11 1.57 6.70 -39.13 -0.26 1.31 16 6 O -0.30 -4.05 10.28 -34.61 -0.36 -4.41 16 7 C 0.03 0.22 9.81 101.05 0.99 1.21 16 8 C 0.09 1.42 6.70 -39.16 -0.26 1.16 16 9 O -0.31 -4.92 10.28 -34.61 -0.36 -5.28 16 10 C 0.02 0.33 9.81 101.05 0.99 1.32 16 11 C -0.14 -2.45 7.68 -39.30 -0.30 -2.75 16 12 C 0.16 2.72 6.33 -83.41 -0.53 2.19 16 13 N -0.68 -11.95 5.08 -14.07 -0.07 -12.03 16 14 C 0.70 15.05 8.13 -86.93 -0.71 14.34 16 15 O -0.58 -14.43 13.09 5.28 0.07 -14.36 16 16 N -0.60 -13.01 2.75 -181.00 -0.50 -13.51 16 17 C 0.08 1.43 9.24 59.85 0.55 1.98 16 18 C 0.27 6.96 2.64 -69.08 -0.18 6.78 16 19 H 0.07 1.91 6.90 -51.93 -0.36 1.56 16 20 C -0.15 -3.53 8.97 37.16 0.33 -3.20 16 21 C -0.53 -14.07 7.99 -34.44 -0.28 -14.34 16 22 H 0.06 1.56 7.33 -52.49 -0.38 1.18 16 23 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 24 N -0.89 -24.92 11.32 55.43 0.63 -24.29 16 25 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 29 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 30 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 31 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.14 1.30 4.52 -52.49 -0.24 1.06 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.36 7.66 -51.93 -0.40 -0.03 16 35 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 36 H 0.06 0.93 7.66 -51.93 -0.40 0.53 16 37 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.05 0.70 7.66 -51.93 -0.40 0.31 16 39 H 0.17 3.20 4.42 -52.49 -0.23 2.97 16 40 H 0.41 6.06 6.25 -40.82 -0.26 5.80 16 41 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 1.50 7.02 -51.93 -0.36 1.14 16 43 H 0.05 0.64 6.30 -51.93 -0.33 0.32 16 44 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 46 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 47 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 378.98 15.07 5.71 5.71 Total: -1.00 -33.27 378.98 -5.93 -39.20 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -6.51 Total: 6.61 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: 0.67 Total: 10.61 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: 0.06 Total: -49.82 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.84 Total: -28.15 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.27 -5.93 -39.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268909415.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.943 kcal (2) G-P(sol) polarization free energy of solvation -33.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds