Wall clock time and date at job start Tue Mar 31 2020 20:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36050 * 117.00078 * 2 1 4 4 C 1.38572 * 120.00455 * 0.02562 * 3 2 1 5 5 C 1.38571 * 120.01193 * 179.72493 * 4 3 2 6 6 O 1.36062 * 119.98452 * 180.22623 * 5 4 3 7 7 C 1.42902 * 116.99844 * 0.02562 * 6 5 4 8 8 C 1.39120 * 120.02798 * 0.25070 * 5 4 3 9 9 O 1.36063 * 119.98736 * 179.97438 * 8 5 4 10 10 C 1.42901 * 117.00024 * 179.97438 * 9 8 5 11 11 C 1.38506 * 120.01659 * 0.02562 * 8 5 4 12 12 C 1.38745 * 119.98713 * 359.97438 * 11 8 5 13 13 N 1.40354 * 120.01519 * 179.97438 * 12 11 8 14 14 C 1.34772 * 120.00308 * 325.34019 * 13 12 11 15 15 O 1.21601 * 119.99894 * 4.43222 * 14 13 12 16 16 N 1.34771 * 120.00289 * 184.43749 * 14 13 12 17 17 C 1.46503 * 120.00084 * 359.97438 * 16 14 13 18 18 C 1.46502 * 120.00110 * 179.97438 * 16 14 13 19 19 H 1.08996 * 109.47368 * 0.02562 * 18 16 14 20 20 C 1.52997 * 109.47365 * 239.99990 * 18 16 14 21 21 C 1.50709 * 109.46891 * 120.00051 * 18 16 14 22 22 H 1.07995 * 119.99734 * 0.02562 * 21 18 16 23 23 C 1.37877 * 119.99850 * 180.02562 * 21 18 16 24 24 N 1.31512 * 119.99869 * 359.97438 * 23 21 18 25 25 Si 1.86794 * 119.99651 * 180.02562 * 23 21 18 26 26 H 1.48504 * 109.47427 * 89.99875 * 25 23 21 27 27 H 1.48505 * 109.46895 * 209.99972 * 25 23 21 28 28 H 1.48501 * 109.47535 * 329.99761 * 25 23 21 29 29 H 1.08994 * 109.47220 * 299.99592 * 1 2 3 30 30 H 1.08999 * 109.47389 * 60.00057 * 1 2 3 31 31 H 1.09005 * 109.47073 * 180.02562 * 1 2 3 32 32 H 1.07999 * 119.99496 * 359.97438 * 4 3 2 33 33 H 1.09003 * 109.46899 * 179.97438 * 7 6 5 34 34 H 1.09004 * 109.47057 * 299.98939 * 7 6 5 35 35 H 1.09001 * 109.47647 * 59.99450 * 7 6 5 36 36 H 1.09005 * 109.46581 * 60.00160 * 10 9 8 37 37 H 1.08999 * 109.47432 * 179.97438 * 10 9 8 38 38 H 1.08998 * 109.47422 * 300.00712 * 10 9 8 39 39 H 1.08001 * 120.00833 * 179.97438 * 11 8 5 40 40 H 0.97001 * 119.99643 * 145.33657 * 13 12 11 41 41 H 1.08998 * 109.47068 * 89.99690 * 17 16 14 42 42 H 1.09001 * 109.47429 * 210.00369 * 17 16 14 43 43 H 1.09005 * 109.46937 * 330.00057 * 17 16 14 44 44 H 1.08998 * 109.47240 * 59.99887 * 20 18 16 45 45 H 1.08996 * 109.47355 * 180.02562 * 20 18 16 46 46 H 1.09005 * 109.47090 * 300.00207 * 20 18 16 47 47 H 0.97001 * 119.99775 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2122 0.0000 4 6 1.2921 2.3744 0.0005 5 6 1.9210 3.6092 0.0063 6 8 1.1796 4.7500 0.0115 7 6 -0.2416 4.6000 0.0112 8 6 3.3103 3.6828 0.0063 9 8 3.9270 4.8957 0.0114 10 6 5.3560 4.8969 0.0116 11 6 4.0657 2.5219 0.0000 12 6 3.4366 1.2853 -0.0058 13 7 4.2016 0.1085 -0.0128 14 6 5.3730 0.0701 -0.6780 15 8 5.8066 1.0769 -1.2043 16 7 6.0639 -1.0841 -0.7600 17 6 5.5418 -2.2970 -0.1255 18 6 7.3371 -1.1259 -1.4836 19 1 7.5604 -0.1369 -1.8835 20 6 7.2377 -2.1308 -2.6330 21 6 8.4363 -1.5466 -0.5422 22 1 8.2091 -1.7616 0.4914 23 6 9.7319 -1.6568 -1.0007 24 7 10.0084 -1.3954 -2.2596 25 14 11.0941 -2.1788 0.1659 26 1 11.2242 -3.6580 0.1449 27 1 12.3758 -1.5630 -0.2625 28 1 10.7656 -1.7304 1.5430 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2136 2.3179 0.0005 33 1 -0.7107 5.5839 0.0161 34 1 -0.5492 4.0549 -0.8812 35 1 -0.5488 4.0469 0.8988 36 1 5.7198 4.3870 -0.8805 37 1 5.7185 5.9248 0.0155 38 1 5.7197 4.3796 0.8994 39 1 5.1442 2.5793 -0.0005 40 1 3.8870 -0.6771 0.4613 41 1 4.9124 -2.8355 -0.8340 42 1 6.3722 -2.9337 0.1797 43 1 4.9523 -2.0242 0.7498 44 1 6.4427 -1.8267 -3.3138 45 1 8.1851 -2.1623 -3.1711 46 1 7.0146 -3.1198 -2.2327 47 1 10.9199 -1.4733 -2.5822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268909415.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:29 Heat of formation + Delta-G solvation = -112.916646 kcal Electronic energy + Delta-G solvation = -30493.056070 eV Core-core repulsion = 26256.675762 eV Total energy + Delta-G solvation = -4236.380308 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.16446 -41.02590 -39.97198 -39.35448 -37.76012 -36.76560 -35.41354 -34.49159 -31.51738 -30.78420 -30.09063 -28.95538 -28.07498 -27.66445 -27.29047 -26.86613 -24.13615 -23.09482 -22.62183 -20.78692 -20.07861 -19.27689 -18.77641 -18.33480 -18.07406 -17.59761 -17.14681 -17.08423 -16.65522 -16.48601 -16.32140 -16.11919 -15.82539 -15.60523 -15.48373 -14.89300 -14.48522 -14.44262 -14.15031 -13.84630 -13.61892 -13.52596 -13.37169 -13.11504 -12.90400 -12.71338 -12.65805 -12.60178 -12.51273 -12.40773 -12.27405 -12.17400 -12.10651 -12.09673 -11.67308 -11.20807 -10.98920 -10.61559 -10.50267 -9.59423 -9.29829 -8.32261 -8.12002 -6.29217 0.13806 0.31890 1.42547 1.44072 1.53675 1.70649 2.12037 2.22094 2.33559 2.39675 2.43613 2.67235 3.06560 3.15212 3.69104 3.91891 4.11415 4.16771 4.32646 4.33288 4.35659 4.42452 4.44077 4.46606 4.46942 4.58580 4.67442 4.69666 4.73315 4.73914 4.79340 4.86735 4.91058 4.97092 5.06000 5.07835 5.33681 5.43674 5.52969 5.62370 5.67978 5.96365 6.05805 6.16591 6.25100 6.28201 6.59928 6.78193 7.07689 7.37741 7.63025 8.91515 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.015478 B = 0.003126 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.535747 B = 8955.518139 C =10194.908483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.325 6.325 3 C 0.109 3.891 4 C -0.229 4.229 5 C 0.115 3.885 6 O -0.324 6.324 7 C 0.014 3.986 8 C 0.060 3.940 9 O -0.320 6.320 10 C 0.027 3.973 11 C -0.152 4.152 12 C 0.124 3.876 13 N -0.666 5.666 14 C 0.692 3.308 15 O -0.626 6.626 16 N -0.611 5.611 17 C 0.081 3.919 18 C 0.280 3.720 19 H 0.012 0.988 20 C -0.132 4.132 21 C -0.538 4.538 22 H 0.061 0.939 23 C 0.016 3.984 24 N -0.917 5.917 25 Si 0.965 3.035 26 H -0.267 1.267 27 H -0.286 1.286 28 H -0.271 1.271 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.121 0.879 32 H 0.182 0.818 33 H 0.119 0.881 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.041 0.959 37 H 0.128 0.872 38 H 0.052 0.948 39 H 0.140 0.860 40 H 0.418 0.582 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.017 0.983 45 H 0.069 0.931 46 H 0.047 0.953 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.555 4.552 7.465 25.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.239 6.239 3 C 0.061 3.939 4 C -0.248 4.248 5 C 0.068 3.932 6 O -0.238 6.238 7 C -0.080 4.080 8 C 0.015 3.985 9 O -0.234 6.234 10 C -0.068 4.068 11 C -0.174 4.174 12 C 0.028 3.972 13 N -0.318 5.318 14 C 0.394 3.606 15 O -0.508 6.508 16 N -0.345 5.345 17 C -0.061 4.061 18 C 0.177 3.823 19 H 0.030 0.970 20 C -0.191 4.191 21 C -0.576 4.576 22 H 0.080 0.920 23 C -0.183 4.183 24 N -0.556 5.556 25 Si 0.790 3.210 26 H -0.193 1.193 27 H -0.212 1.212 28 H -0.196 1.196 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.139 0.861 32 H 0.199 0.801 33 H 0.137 0.863 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.060 0.940 37 H 0.146 0.854 38 H 0.071 0.929 39 H 0.157 0.843 40 H 0.258 0.742 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.036 0.964 45 H 0.088 0.912 46 H 0.066 0.934 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -22.993 5.356 6.943 24.609 hybrid contribution 1.009 -0.704 0.361 1.282 sum -21.985 4.652 7.304 23.629 Atomic orbital electron populations 1.23421 0.75983 1.05919 1.02482 1.86065 1.23779 1.25036 1.88993 1.18258 0.89117 0.85700 1.00794 1.21082 1.01724 0.88933 1.13079 1.17979 0.87580 0.86477 1.01143 1.86182 1.20921 1.27809 1.88866 1.23431 0.76408 1.05716 1.02490 1.18172 0.89793 0.84945 1.05636 1.86077 1.22161 1.25517 1.89645 1.23171 0.77396 1.05120 1.01119 1.21046 1.01074 0.90123 1.05142 1.16668 0.87389 0.85917 1.07262 1.42386 1.20489 1.14463 1.54430 1.16138 0.80763 0.84205 0.79504 1.90802 1.70774 1.34809 1.54384 1.47450 1.23092 1.08074 1.55837 1.21777 1.00001 0.87033 0.97292 1.18466 0.78566 0.95298 0.89926 0.97014 1.21887 1.00506 0.98615 0.98049 1.21583 0.92886 1.46818 0.96357 0.92035 1.25711 1.00794 0.95096 0.96737 1.70025 1.20563 1.49259 1.15753 0.85451 0.78005 0.78676 0.78825 1.19255 1.21218 1.19620 0.90971 0.91733 0.86078 0.80144 0.86263 0.91525 0.91073 0.93992 0.85403 0.92885 0.84280 0.74194 0.91696 0.90400 0.90288 0.96433 0.91184 0.93388 0.92635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.32 -7.12 10.04 -94.12 -0.95 -8.07 16 3 C 0.11 2.93 6.70 22.58 0.15 3.08 16 4 C -0.23 -5.13 8.02 22.43 0.18 -4.95 16 5 C 0.11 3.21 6.70 22.56 0.15 3.36 16 6 O -0.32 -7.98 10.28 -80.22 -0.82 -8.81 16 7 C 0.01 0.17 9.81 113.37 1.11 1.28 16 8 C 0.06 2.04 6.70 22.55 0.15 2.19 16 9 O -0.32 -10.61 10.28 -80.23 -0.82 -11.44 16 10 C 0.03 0.77 9.81 113.37 1.11 1.88 16 11 C -0.15 -5.63 7.68 22.46 0.17 -5.46 16 12 C 0.12 4.22 6.33 38.13 0.24 4.47 16 13 N -0.67 -23.41 5.08 -316.70 -1.61 -25.02 16 14 C 0.69 30.95 8.13 179.06 1.46 32.40 16 15 O -0.63 -33.17 13.09 -4.03 -0.05 -33.22 16 16 N -0.61 -26.86 2.75 -844.82 -2.33 -29.18 16 17 C 0.08 2.64 9.24 127.77 1.18 3.82 16 18 C 0.28 14.81 2.64 44.25 0.12 14.92 16 19 H 0.01 0.75 6.90 -2.39 -0.02 0.73 16 20 C -0.13 -6.49 8.97 71.98 0.65 -5.84 16 21 C -0.54 -29.34 7.99 25.60 0.20 -29.14 16 22 H 0.06 3.25 7.33 -2.91 -0.02 3.23 16 23 C 0.02 0.89 5.30 84.65 0.45 1.34 16 24 N -0.92 -53.03 11.32 21.45 0.24 -52.79 16 25 Si 0.97 43.11 29.54 68.60 2.03 45.13 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 27 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 28 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 29 H 0.07 0.55 7.66 -2.39 -0.02 0.53 16 30 H 0.06 0.60 7.66 -2.39 -0.02 0.58 16 31 H 0.12 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.18 2.45 4.52 -2.91 -0.01 2.44 16 33 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 35 H 0.07 0.63 7.66 -2.39 -0.02 0.61 16 36 H 0.04 1.36 7.66 -2.38 -0.02 1.35 16 37 H 0.13 2.74 8.14 -2.39 -0.02 2.73 16 38 H 0.05 1.50 7.66 -2.39 -0.02 1.48 16 39 H 0.14 5.87 4.42 -2.91 -0.01 5.86 16 40 H 0.42 12.00 6.25 -92.71 -0.58 11.42 16 41 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.08 2.65 7.02 -2.39 -0.02 2.64 16 43 H 0.08 2.02 6.30 -2.38 -0.02 2.00 16 44 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.07 3.80 6.07 -2.39 -0.01 3.78 16 46 H 0.05 2.13 7.67 -2.38 -0.02 2.11 16 47 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -76.95 378.98 4.56 -72.39 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 0.44 Total: 26.37 kcal Atomic # 6 Polarization: 16.20 SS G_CDS: 8.44 Total: 24.63 kcal Atomic # 7 Polarization: -103.30 SS G_CDS: -3.69 Total: -106.99 kcal Atomic # 8 Polarization: -58.89 SS G_CDS: -2.65 Total: -61.53 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -76.95 4.56 -72.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268909415.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.525 kcal (2) G-P(sol) polarization free energy of solvation -76.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds