Wall clock time and date at job start Tue Mar 31 2020 21:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47289 * 2 1 4 4 C 1.38467 * 120.00314 * 179.97438 * 3 2 1 5 5 N 1.29438 * 125.18957 * 179.71784 * 4 3 2 6 6 C 1.33626 * 116.89605 * 179.77906 * 5 4 3 7 7 C 1.47171 * 122.48249 * 180.23023 * 6 5 4 8 8 O 1.21648 * 120.00373 * 180.31358 * 7 6 5 9 9 N 1.34781 * 119.99375 * 0.31134 * 7 6 5 10 10 C 1.46502 * 119.99640 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47091 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.49832 * 54.99392 * 11 10 9 13 13 C 1.53037 * 109.49945 * 175.06095 * 11 10 9 14 14 C 1.53040 * 109.53848 * 181.31583 * 13 11 10 15 15 C 1.53189 * 109.31353 * 298.63229 * 14 13 11 16 16 N 1.46930 * 108.77596 * 54.63650 * 15 14 13 17 17 C 1.36931 * 120.63260 * 126.38762 * 16 15 14 18 18 H 1.08000 * 120.00511 * 207.68504 * 17 16 15 19 19 C 1.38813 * 119.99760 * 27.68553 * 17 16 15 20 20 N 1.31618 * 120.00128 * 17.35677 * 19 17 16 21 21 Si 1.86801 * 119.99901 * 197.35715 * 19 17 16 22 22 H 1.48496 * 109.47205 * 60.00018 * 21 19 17 23 23 H 1.48500 * 109.47203 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47234 * 300.00292 * 21 19 17 25 25 C 1.46938 * 118.76020 * 306.41429 * 16 15 14 26 26 C 1.35057 * 115.04472 * 0.51623 * 6 5 4 27 27 S 1.76054 * 125.18524 * 0.02906 * 4 3 2 28 28 H 1.08991 * 109.47239 * 59.99741 * 1 2 3 29 29 H 1.08999 * 109.46667 * 300.00062 * 1 2 3 30 30 H 1.08996 * 109.46752 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47286 * 120.00208 * 2 1 3 32 32 H 1.09002 * 109.47099 * 240.00226 * 2 1 3 33 33 H 0.97002 * 120.00458 * 0.02562 * 3 2 1 34 34 H 0.96993 * 120.00199 * 359.97438 * 9 7 6 35 35 H 1.09005 * 109.46998 * 299.99424 * 10 9 7 36 36 H 1.09001 * 109.47293 * 59.99584 * 10 9 7 37 37 H 1.09006 * 109.46167 * 301.33723 * 13 11 10 38 38 H 1.09004 * 109.46160 * 61.30421 * 13 11 10 39 39 H 1.08997 * 109.50173 * 58.58663 * 14 13 11 40 40 H 1.09004 * 109.49575 * 178.68687 * 14 13 11 41 41 H 1.09003 * 109.59010 * 174.42229 * 15 14 13 42 42 H 1.09003 * 109.58545 * 294.70677 * 15 14 13 43 43 H 0.97001 * 119.99804 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.56100 * 293.78194 * 25 16 15 45 45 H 1.09003 * 109.61115 * 173.35364 * 25 16 15 46 46 H 1.07998 * 125.87047 * 179.71180 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3797 1.6342 0.0005 5 7 3.9198 2.8106 -0.0046 6 6 5.2550 2.8627 0.0015 7 6 5.9963 4.1341 0.0017 8 8 7.2128 4.1290 0.0016 9 7 5.3272 5.3041 0.0018 10 6 6.0651 6.5698 0.0015 11 6 5.0758 7.7369 0.0011 12 1 4.3909 7.6335 0.8428 13 6 5.8418 9.0559 0.1249 14 6 4.8512 10.2220 0.1577 15 6 4.0543 10.2467 -1.1503 16 7 3.4312 8.9310 -1.3494 17 6 2.0839 8.8231 -1.5687 18 1 1.5599 7.9243 -1.2790 19 6 1.3915 9.8690 -2.1633 20 7 2.0466 10.8030 -2.8196 21 14 -0.4701 9.9509 -2.0319 22 1 -0.8625 10.0281 -0.6018 23 1 -0.9643 11.1549 -2.7470 24 1 -1.0635 8.7345 -2.6430 25 6 4.2809 7.7329 -1.3084 26 6 5.8741 1.6624 0.0014 27 16 4.6400 0.4050 0.0005 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.3881 2.1185 0.0004 34 1 4.3573 5.3082 0.0015 35 1 6.6923 6.6250 0.8913 36 1 6.6917 6.6248 -0.8888 37 1 6.4274 9.0509 1.0443 38 1 6.5088 9.1701 -0.7296 39 1 4.1681 10.0956 0.9976 40 1 5.3963 11.1593 0.2693 41 1 3.2806 11.0124 -1.0925 42 1 4.7239 10.4659 -1.9821 43 1 1.5627 11.5336 -3.2354 44 1 4.9690 7.7443 -2.1536 45 1 3.6570 6.8402 -1.3544 46 1 6.9419 1.5012 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269379173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:41 Heat of formation + Delta-G solvation = 21.975630 kcal Electronic energy + Delta-G solvation = -26724.880428 eV Core-core repulsion = 22969.395110 eV Total energy + Delta-G solvation = -3755.485318 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.29597 -38.79220 -37.70310 -36.64319 -34.76596 -32.94062 -31.69620 -30.42430 -30.31511 -29.00482 -26.29757 -25.25695 -24.30341 -23.38854 -22.24958 -21.84719 -20.80828 -19.78934 -19.09728 -18.59999 -16.97428 -16.76162 -16.30294 -15.92096 -15.70707 -15.35218 -15.29547 -14.80478 -14.47817 -14.06119 -13.86811 -13.54763 -13.38229 -13.27041 -12.89942 -12.73704 -12.52207 -12.32061 -12.27914 -12.13615 -12.06264 -11.99139 -11.25110 -10.99219 -10.68778 -10.62433 -10.46603 -10.23271 -10.16261 -10.11048 -9.89956 -9.84702 -9.52547 -9.46711 -9.38817 -8.84479 -8.43784 -8.05715 -6.64747 -5.76692 -3.18690 0.58062 0.80776 1.39506 2.08734 2.58366 3.38321 3.43856 3.44331 3.45327 3.47820 4.29559 4.45691 4.50125 4.52217 4.79214 5.09868 5.15068 5.21139 5.27963 5.34042 5.34337 5.48213 5.52811 5.53747 5.65613 5.71148 5.87413 6.00528 6.05466 6.23119 6.28855 6.37890 6.41982 6.58084 6.64540 6.74240 6.82941 6.90088 6.94809 7.01779 7.42955 7.47176 7.70098 7.78042 7.81118 8.31772 8.47026 9.23492 9.87169 10.44162 11.31737 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009714 B = 0.003101 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.794717 B = 9028.018080 C =11610.029599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.116 3.884 3 N -0.692 5.692 4 C 0.349 3.651 5 N -0.528 5.528 6 C 0.063 3.937 7 C 0.589 3.411 8 O -0.542 6.542 9 N -0.702 5.702 10 C 0.126 3.874 11 C -0.117 4.117 12 H 0.073 0.927 13 C -0.099 4.099 14 C -0.142 4.142 15 C 0.169 3.831 16 N -0.591 5.591 17 C -0.252 4.252 18 H 0.064 0.936 19 C 0.002 3.998 20 N -0.902 5.902 21 Si 0.902 3.098 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.154 3.846 26 C -0.214 4.214 27 S 0.067 5.933 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.417 0.583 34 H 0.413 0.587 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.047 0.953 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.086 0.914 42 H 0.017 0.983 43 H 0.254 0.746 44 H 0.018 0.982 45 H 0.051 0.949 46 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.881 -21.562 7.625 22.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.008 4.008 3 N -0.335 5.335 4 C -0.025 4.025 5 N -0.255 5.255 6 C -0.068 4.068 7 C 0.372 3.628 8 O -0.420 6.420 9 N -0.353 5.353 10 C 0.002 3.998 11 C -0.138 4.138 12 H 0.092 0.908 13 C -0.137 4.137 14 C -0.181 4.181 15 C 0.043 3.957 16 N -0.313 5.313 17 C -0.382 4.382 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.547 5.547 21 Si 0.731 3.269 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.210 1.210 25 C 0.027 3.973 26 C -0.358 4.358 27 S 0.314 5.686 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.256 0.744 34 H 0.249 0.751 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.104 0.896 42 H 0.035 0.965 43 H 0.064 0.936 44 H 0.036 0.964 45 H 0.070 0.930 46 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 2.271 -22.210 7.501 23.552 hybrid contribution -1.239 1.096 -0.015 1.654 sum 1.032 -21.114 7.487 22.426 Atomic orbital electron populations 1.21958 0.93176 1.03621 1.03426 1.21534 0.95925 0.81278 1.02035 1.44017 1.00356 1.08896 1.80185 1.24121 0.90626 0.90373 0.97362 1.66613 1.09827 1.22614 1.26448 1.19938 0.87448 0.94650 1.04811 1.17132 0.86331 0.82460 0.76917 1.90802 1.12706 1.87271 1.51256 1.45918 1.11490 1.05154 1.72705 1.21531 0.94658 0.81726 1.01890 1.21945 0.96945 0.93077 1.01825 0.90838 1.21342 0.97536 0.94459 1.00410 1.22170 0.97966 0.96145 1.01795 1.20796 0.95390 0.88804 0.90706 1.44030 1.04052 1.00392 1.82850 1.19136 0.83045 1.02824 1.33206 0.91779 1.25018 0.97918 0.99319 0.97351 1.70032 1.34516 1.14618 1.35522 0.86386 0.85742 0.77057 0.77675 1.21061 1.21650 1.20954 1.20902 0.92846 0.91089 0.92439 1.26634 1.04020 0.92907 1.12218 1.84864 0.97760 1.10938 1.75065 0.91328 0.91430 0.90259 0.91416 0.91369 0.74415 0.75075 0.91756 0.91365 0.93416 0.92447 0.92772 0.93198 0.89568 0.96466 0.93615 0.96372 0.93028 0.79552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.62 10.03 37.16 0.37 -0.25 16 2 C 0.12 0.61 6.31 -4.04 -0.03 0.58 16 3 N -0.69 -5.67 5.71 -61.01 -0.35 -6.02 16 4 C 0.35 3.83 8.42 -88.02 -0.74 3.09 16 5 N -0.53 -7.19 10.02 -10.58 -0.11 -7.30 16 6 C 0.06 0.90 6.67 -84.59 -0.56 0.33 16 7 C 0.59 9.51 7.79 -12.63 -0.10 9.42 16 8 O -0.54 -9.91 16.66 5.23 0.09 -9.82 16 9 N -0.70 -10.95 5.33 -61.46 -0.33 -11.28 16 10 C 0.13 1.97 5.07 -4.04 -0.02 1.95 16 11 C -0.12 -2.03 2.37 -90.50 -0.21 -2.24 16 12 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 13 C -0.10 -1.68 5.17 -26.69 -0.14 -1.82 16 14 C -0.14 -2.72 6.08 -26.61 -0.16 -2.88 16 15 C 0.17 4.05 5.31 -3.71 -0.02 4.03 16 16 N -0.59 -14.83 3.00 -172.31 -0.52 -15.34 16 17 C -0.25 -6.93 9.58 -15.06 -0.14 -7.07 16 18 H 0.06 1.72 7.89 -52.49 -0.41 1.30 16 19 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 20 N -0.90 -26.31 11.19 55.49 0.62 -25.69 16 21 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.15 3.23 5.60 -3.70 -0.02 3.21 16 26 C -0.21 -2.55 10.83 29.60 0.32 -2.23 16 27 S 0.07 0.62 22.62 -107.50 -2.43 -1.81 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.42 3.30 8.60 -40.82 -0.35 2.95 16 34 H 0.41 6.38 7.18 -40.82 -0.29 6.09 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.09 2.31 6.04 -51.93 -0.31 2.00 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.05 1.07 7.14 -51.93 -0.37 0.70 16 46 H 0.19 2.00 8.01 -52.49 -0.42 1.58 16 LS Contribution 386.71 15.07 5.83 5.83 Total: -1.00 -32.25 386.71 -10.98 -43.23 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -7.22 Total: 5.48 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -1.54 Total: 6.11 kcal Atomic # 7 Polarization: -64.95 SS G_CDS: -0.68 Total: -65.62 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Atomic # 16 Polarization: 0.62 SS G_CDS: -2.43 Total: -1.81 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.25 -10.98 -43.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269379173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.201 kcal (2) G-P(sol) polarization free energy of solvation -32.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds