Wall clock time and date at job start Tue Mar 31 2020 21:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47289 * 2 1 4 4 C 1.38467 * 120.00314 * 179.97438 * 3 2 1 5 5 N 1.29438 * 125.18957 * 179.71784 * 4 3 2 6 6 C 1.33626 * 116.89605 * 179.77906 * 5 4 3 7 7 C 1.47171 * 122.48249 * 180.23023 * 6 5 4 8 8 O 1.21648 * 120.00373 * 180.31358 * 7 6 5 9 9 N 1.34781 * 119.99375 * 0.31134 * 7 6 5 10 10 C 1.46502 * 119.99640 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47091 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.49832 * 54.99392 * 11 10 9 13 13 C 1.53037 * 109.49945 * 175.06095 * 11 10 9 14 14 C 1.53040 * 109.53848 * 181.31583 * 13 11 10 15 15 C 1.53189 * 109.31353 * 298.63229 * 14 13 11 16 16 N 1.46930 * 108.77596 * 54.63650 * 15 14 13 17 17 C 1.36931 * 120.63260 * 126.38762 * 16 15 14 18 18 H 1.08000 * 120.00511 * 207.68504 * 17 16 15 19 19 C 1.38813 * 119.99760 * 27.68553 * 17 16 15 20 20 N 1.31618 * 120.00128 * 17.35677 * 19 17 16 21 21 Si 1.86801 * 119.99901 * 197.35715 * 19 17 16 22 22 H 1.48496 * 109.47205 * 60.00018 * 21 19 17 23 23 H 1.48500 * 109.47203 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47234 * 300.00292 * 21 19 17 25 25 C 1.46938 * 118.76020 * 306.41429 * 16 15 14 26 26 C 1.35057 * 115.04472 * 0.51623 * 6 5 4 27 27 S 1.76054 * 125.18524 * 0.02906 * 4 3 2 28 28 H 1.08991 * 109.47239 * 59.99741 * 1 2 3 29 29 H 1.08999 * 109.46667 * 300.00062 * 1 2 3 30 30 H 1.08996 * 109.46752 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47286 * 120.00208 * 2 1 3 32 32 H 1.09002 * 109.47099 * 240.00226 * 2 1 3 33 33 H 0.97002 * 120.00458 * 0.02562 * 3 2 1 34 34 H 0.96993 * 120.00199 * 359.97438 * 9 7 6 35 35 H 1.09005 * 109.46998 * 299.99424 * 10 9 7 36 36 H 1.09001 * 109.47293 * 59.99584 * 10 9 7 37 37 H 1.09006 * 109.46167 * 301.33723 * 13 11 10 38 38 H 1.09004 * 109.46160 * 61.30421 * 13 11 10 39 39 H 1.08997 * 109.50173 * 58.58663 * 14 13 11 40 40 H 1.09004 * 109.49575 * 178.68687 * 14 13 11 41 41 H 1.09003 * 109.59010 * 174.42229 * 15 14 13 42 42 H 1.09003 * 109.58545 * 294.70677 * 15 14 13 43 43 H 0.97001 * 119.99804 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.56100 * 293.78194 * 25 16 15 45 45 H 1.09003 * 109.61115 * 173.35364 * 25 16 15 46 46 H 1.07998 * 125.87047 * 179.71180 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3797 1.6342 0.0005 5 7 3.9198 2.8106 -0.0046 6 6 5.2550 2.8627 0.0015 7 6 5.9963 4.1341 0.0017 8 8 7.2128 4.1290 0.0016 9 7 5.3272 5.3041 0.0018 10 6 6.0651 6.5698 0.0015 11 6 5.0758 7.7369 0.0011 12 1 4.3909 7.6335 0.8428 13 6 5.8418 9.0559 0.1249 14 6 4.8512 10.2220 0.1577 15 6 4.0543 10.2467 -1.1503 16 7 3.4312 8.9310 -1.3494 17 6 2.0839 8.8231 -1.5687 18 1 1.5599 7.9243 -1.2790 19 6 1.3915 9.8690 -2.1633 20 7 2.0466 10.8030 -2.8196 21 14 -0.4701 9.9509 -2.0319 22 1 -0.8625 10.0281 -0.6018 23 1 -0.9643 11.1549 -2.7470 24 1 -1.0635 8.7345 -2.6430 25 6 4.2809 7.7329 -1.3084 26 6 5.8741 1.6624 0.0014 27 16 4.6400 0.4050 0.0005 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.3881 2.1185 0.0004 34 1 4.3573 5.3082 0.0015 35 1 6.6923 6.6250 0.8913 36 1 6.6917 6.6248 -0.8888 37 1 6.4274 9.0509 1.0443 38 1 6.5088 9.1701 -0.7296 39 1 4.1681 10.0956 0.9976 40 1 5.3963 11.1593 0.2693 41 1 3.2806 11.0124 -1.0925 42 1 4.7239 10.4659 -1.9821 43 1 1.5627 11.5336 -3.2354 44 1 4.9690 7.7443 -2.1536 45 1 3.6570 6.8402 -1.3544 46 1 6.9419 1.5012 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269379173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:41 Heat of formation + Delta-G solvation = 0.766317 kcal Electronic energy + Delta-G solvation = -26725.800132 eV Core-core repulsion = 22969.395110 eV Total energy + Delta-G solvation = -3756.405023 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.37526 -39.92420 -39.19884 -37.31635 -36.29206 -34.67063 -32.41084 -32.29318 -31.84508 -29.76492 -27.62083 -27.19179 -25.39205 -23.92979 -23.80369 -23.10413 -22.28832 -21.06164 -20.41588 -19.60752 -18.66166 -17.82081 -17.46429 -16.86412 -16.74423 -16.66193 -16.28020 -16.11495 -15.80457 -15.54494 -15.13315 -15.05040 -14.75883 -14.51216 -14.15634 -14.02008 -13.75490 -13.57845 -13.25663 -13.06957 -13.02706 -12.86058 -12.67185 -12.63887 -12.48530 -12.30906 -11.98312 -11.82844 -11.59610 -11.46434 -11.34022 -11.16368 -11.07714 -10.75765 -10.52531 -10.28495 -10.07748 -8.82372 -8.68200 -7.86793 -5.32259 -0.32966 0.01502 0.52119 1.08132 1.46164 1.48942 1.55806 1.90074 2.28715 2.36809 2.51237 3.27452 3.41390 3.59180 3.98032 3.99136 4.00396 4.05642 4.17158 4.23378 4.32878 4.41263 4.45925 4.56508 4.60085 4.72639 4.76104 4.87329 4.88355 4.91408 5.01124 5.01173 5.10682 5.21842 5.26513 5.32366 5.37256 5.45035 5.56453 5.60700 5.66520 5.78713 6.20115 6.38578 6.43803 6.78655 7.11018 7.15090 7.86263 8.38366 9.19405 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009714 B = 0.003101 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.794717 B = 9028.018080 C =11610.029599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.110 3.890 3 N -0.687 5.687 4 C 0.334 3.666 5 N -0.560 5.560 6 C 0.038 3.962 7 C 0.587 3.413 8 O -0.570 6.570 9 N -0.702 5.702 10 C 0.135 3.865 11 C -0.100 4.100 12 H 0.073 0.927 13 C -0.096 4.096 14 C -0.130 4.130 15 C 0.172 3.828 16 N -0.609 5.609 17 C -0.265 4.265 18 H 0.066 0.934 19 C -0.050 4.050 20 N -0.936 5.936 21 Si 0.967 3.033 22 H -0.277 1.277 23 H -0.294 1.294 24 H -0.275 1.275 25 C 0.155 3.845 26 C -0.222 4.222 27 S 0.139 5.861 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.416 0.584 34 H 0.413 0.587 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.072 0.928 41 H 0.052 0.948 42 H -0.006 1.006 43 H 0.250 0.750 44 H 0.006 0.994 45 H 0.048 0.952 46 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.517 -23.790 9.021 25.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.013 4.013 3 N -0.328 5.328 4 C -0.040 4.040 5 N -0.288 5.288 6 C -0.094 4.094 7 C 0.371 3.629 8 O -0.450 6.450 9 N -0.352 5.352 10 C 0.011 3.989 11 C -0.120 4.120 12 H 0.091 0.909 13 C -0.134 4.134 14 C -0.169 4.169 15 C 0.047 3.953 16 N -0.332 5.332 17 C -0.395 4.395 18 H 0.084 0.916 19 C -0.246 4.246 20 N -0.582 5.582 21 Si 0.795 3.205 22 H -0.203 1.203 23 H -0.221 1.221 24 H -0.201 1.201 25 C 0.029 3.971 26 C -0.366 4.366 27 S 0.387 5.613 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.115 0.885 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.255 0.745 34 H 0.249 0.751 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.012 0.988 43 H 0.059 0.941 44 H 0.024 0.976 45 H 0.067 0.933 46 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 1.884 -24.488 8.914 26.128 hybrid contribution -1.154 1.654 -0.488 2.075 sum 0.730 -22.834 8.426 24.350 Atomic orbital electron populations 1.21943 0.92010 1.04633 1.03106 1.21792 0.96906 0.79754 1.02827 1.44325 0.99385 1.10191 1.78914 1.24445 0.91933 0.90724 0.96896 1.66558 1.09677 1.24378 1.28217 1.19717 0.88041 0.94296 1.07313 1.17442 0.86160 0.83175 0.76089 1.90770 1.13778 1.87780 1.52713 1.45913 1.11454 1.05200 1.72615 1.21400 0.94055 0.81136 1.02292 1.21706 0.96809 0.94324 0.99183 0.90867 1.21339 0.97030 0.92798 1.02233 1.22002 0.97996 0.98472 0.98424 1.20650 0.94416 0.87686 0.92574 1.44296 1.04003 1.01768 1.83118 1.19489 0.84482 1.02904 1.32588 0.91591 1.25792 1.02220 0.99183 0.97362 1.70196 1.36017 1.15212 1.36752 0.85349 0.80504 0.76902 0.77753 1.20288 1.22052 1.20081 1.20977 0.92450 0.89521 0.94161 1.26921 1.05319 0.93581 1.10766 1.84560 0.95017 1.08040 1.73703 0.91839 0.91559 0.88540 0.90349 0.90647 0.74491 0.75058 0.90283 0.91963 0.89901 0.92403 0.92935 0.90984 0.92908 0.98831 0.94129 0.97623 0.93310 0.78864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.87 10.03 71.98 0.72 -0.15 16 2 C 0.11 0.90 6.31 86.38 0.55 1.44 16 3 N -0.69 -10.23 5.71 -346.94 -1.98 -12.21 16 4 C 0.33 6.89 8.42 179.44 1.51 8.40 16 5 N -0.56 -15.02 10.02 -187.40 -1.88 -16.89 16 6 C 0.04 1.06 6.67 40.49 0.27 1.33 16 7 C 0.59 18.94 7.79 86.59 0.67 19.62 16 8 O -0.57 -20.77 16.66 -4.18 -0.07 -20.84 16 9 N -0.70 -21.74 5.33 -466.59 -2.49 -24.23 16 10 C 0.14 4.09 5.07 86.38 0.44 4.53 16 11 C -0.10 -3.35 2.37 -10.72 -0.03 -3.37 16 12 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 13 C -0.10 -3.06 5.17 30.62 0.16 -2.90 16 14 C -0.13 -4.85 6.08 30.67 0.19 -4.66 16 15 C 0.17 8.48 5.31 86.36 0.46 8.94 16 16 N -0.61 -31.15 3.00 -699.06 -2.09 -33.24 16 17 C -0.26 -14.75 9.58 84.03 0.81 -13.95 16 18 H 0.07 3.57 7.89 -2.91 -0.02 3.55 16 19 C -0.05 -2.84 4.91 84.86 0.42 -2.42 16 20 N -0.94 -56.21 11.19 21.65 0.24 -55.96 16 21 Si 0.97 45.05 29.59 68.60 2.03 47.08 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 25 C 0.15 6.57 5.60 86.36 0.48 7.05 16 26 C -0.22 -5.03 10.83 67.09 0.73 -4.31 16 27 S 0.14 2.26 22.62 -56.49 -1.28 0.98 16 28 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.42 6.20 8.60 -92.71 -0.80 5.40 16 34 H 0.41 12.81 7.18 -92.71 -0.67 12.14 16 35 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 36 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 38 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 41 H 0.05 2.93 6.04 -2.39 -0.01 2.92 16 42 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 43 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 44 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 45 H 0.05 2.06 7.14 -2.39 -0.02 2.04 16 46 H 0.19 3.95 8.01 -2.91 -0.02 3.93 16 Total: -1.00 -71.10 386.71 -0.60 -71.70 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: -0.46 Total: 24.07 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: 7.37 Total: 19.54 kcal Atomic # 7 Polarization: -134.34 SS G_CDS: -8.20 Total: -142.53 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.07 Total: -20.84 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -1.28 Total: 0.98 kcal Total: -71.10 -0.60 -71.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269379173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.469 kcal (2) G-P(sol) polarization free energy of solvation -71.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds