Wall clock time and date at job start Tue Mar 31 2020 21:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.46939 * 2 1 4 4 C 1.38469 * 119.99812 * 179.97438 * 3 2 1 5 5 N 1.29443 * 125.18286 * 180.32583 * 4 3 2 6 6 C 1.33634 * 116.88934 * 180.18965 * 5 4 3 7 7 C 1.47166 * 122.47353 * 179.74793 * 6 5 4 8 8 O 1.21657 * 119.99843 * 179.71790 * 7 6 5 9 9 N 1.34774 * 120.00244 * 359.71786 * 7 6 5 10 10 C 1.46499 * 120.00141 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47477 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.49218 * 305.06443 * 11 10 9 13 13 C 1.53032 * 109.49995 * 184.99769 * 11 10 9 14 14 C 1.53043 * 109.53877 * 178.68217 * 13 11 10 15 15 C 1.53186 * 109.31437 * 61.36566 * 14 13 11 16 16 N 1.46927 * 108.77479 * 305.36434 * 15 14 13 17 17 C 1.36936 * 120.63328 * 233.58439 * 16 15 14 18 18 H 1.08004 * 119.99687 * 151.83020 * 17 16 15 19 19 C 1.38804 * 119.99782 * 331.83092 * 17 16 15 20 20 N 1.31622 * 120.00247 * 343.08514 * 19 17 16 21 21 Si 1.86810 * 119.99877 * 163.08468 * 19 17 16 22 22 H 1.48499 * 109.47137 * 59.99982 * 21 19 17 23 23 H 1.48496 * 109.47053 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46625 * 300.00079 * 21 19 17 25 25 C 1.46933 * 118.73465 * 53.86032 * 16 15 14 26 26 C 1.35050 * 115.04401 * 359.48785 * 6 5 4 27 27 S 1.76048 * 125.18873 * 359.97438 * 4 3 2 28 28 H 1.09007 * 109.46921 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46608 * 299.99209 * 1 2 3 30 30 H 1.08997 * 109.47213 * 59.99905 * 1 2 3 31 31 H 1.09005 * 109.46990 * 240.00237 * 2 1 3 32 32 H 1.08994 * 109.47303 * 120.00858 * 2 1 3 33 33 H 0.97002 * 120.00312 * 0.02562 * 3 2 1 34 34 H 0.97002 * 119.99805 * 359.97438 * 9 7 6 35 35 H 1.08995 * 109.47309 * 59.99182 * 10 9 7 36 36 H 1.09002 * 109.46648 * 299.99953 * 10 9 7 37 37 H 1.09003 * 109.46153 * 58.66055 * 13 11 10 38 38 H 1.08997 * 109.44923 * 298.69567 * 13 11 10 39 39 H 1.08996 * 109.49433 * 301.41091 * 14 13 11 40 40 H 1.09007 * 109.52229 * 181.32916 * 14 13 11 41 41 H 1.09001 * 109.59236 * 185.57892 * 15 14 13 42 42 H 1.09008 * 109.70642 * 65.21545 * 15 14 13 43 43 H 0.97001 * 120.00021 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.58974 * 65.93163 * 25 16 15 45 45 H 1.09003 * 109.58500 * 186.35202 * 25 16 15 46 46 H 1.08002 * 125.86657 * 180.27076 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3797 1.6342 0.0005 5 7 3.9197 2.8106 0.0066 6 6 5.2550 2.8628 0.0021 7 6 5.9961 4.1342 0.0026 8 8 7.2127 4.1292 0.0036 9 7 5.3271 5.3042 0.0020 10 6 6.0649 6.5699 0.0020 11 6 5.0756 7.7370 0.0006 12 1 4.3908 7.6323 -0.8409 13 6 5.8416 9.0558 -0.1251 14 6 4.8509 10.2218 -0.1596 15 6 4.0540 10.2485 1.1483 16 7 3.4309 8.9331 1.3493 17 6 2.0836 8.8255 1.5692 18 1 1.5581 7.9294 1.2736 19 6 1.3933 9.8681 2.1719 20 7 2.0511 10.8012 2.8268 21 14 -0.4693 9.9468 2.0535 22 1 -1.0562 8.7273 2.6647 23 1 -0.9608 11.1482 2.7747 24 1 -0.8715 10.0277 0.6263 25 6 4.2820 7.7358 1.3160 26 6 5.8740 1.6625 0.0026 27 16 4.6400 0.4051 0.0019 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8898 33 1 1.3880 2.1185 0.0004 34 1 4.3571 5.3082 0.0009 35 1 6.6922 6.6247 -0.8876 36 1 6.6914 6.6252 0.8923 37 1 6.4272 9.0495 -1.0444 38 1 6.5084 9.1711 0.7293 39 1 4.1679 10.0941 -0.9993 40 1 5.3955 11.1593 -0.2729 41 1 3.2803 11.0140 1.0894 42 1 4.7220 10.4674 1.9814 43 1 1.5687 11.5296 3.2482 44 1 4.9701 7.7530 2.1611 45 1 3.6589 6.8430 1.3676 46 1 6.9419 1.5013 0.0036 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269379174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:45 Heat of formation + Delta-G solvation = 21.748423 kcal Electronic energy + Delta-G solvation = -26722.744733 eV Core-core repulsion = 22967.249563 eV Total energy + Delta-G solvation = -3755.495170 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.29353 -38.78615 -37.68710 -36.64177 -34.76226 -32.93793 -31.69498 -30.41258 -30.31168 -29.00366 -26.29341 -25.25310 -24.30199 -23.38810 -22.24571 -21.84001 -20.80666 -19.78906 -19.10022 -18.59931 -16.97226 -16.75887 -16.30147 -15.92016 -15.70598 -15.35002 -15.29359 -14.80394 -14.47556 -14.05875 -13.86570 -13.54461 -13.38328 -13.26880 -12.89847 -12.73411 -12.52124 -12.31700 -12.27303 -12.13564 -12.06180 -11.99045 -11.24359 -10.98982 -10.68720 -10.62400 -10.46657 -10.23381 -10.16474 -10.11047 -9.90215 -9.84908 -9.52562 -9.46638 -9.38249 -8.84264 -8.43866 -8.05682 -6.63793 -5.76646 -3.19519 0.58139 0.80821 1.39552 2.08792 2.58433 3.38257 3.44037 3.44228 3.45153 3.47874 4.29617 4.45754 4.50051 4.52252 4.79227 5.09992 5.15514 5.21163 5.28130 5.34070 5.34334 5.48142 5.53361 5.53812 5.65786 5.71226 5.87565 6.00702 6.05289 6.23136 6.29416 6.37827 6.41665 6.58215 6.64723 6.74406 6.83213 6.90230 6.94876 7.02010 7.43038 7.47250 7.70193 7.78149 7.81114 8.31924 8.47427 9.23569 9.87036 10.44411 11.31629 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009708 B = 0.003100 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.466780 B = 9028.994426 C =11610.851534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.116 3.884 3 N -0.692 5.692 4 C 0.349 3.651 5 N -0.528 5.528 6 C 0.063 3.937 7 C 0.589 3.411 8 O -0.542 6.542 9 N -0.702 5.702 10 C 0.126 3.874 11 C -0.117 4.117 12 H 0.073 0.927 13 C -0.099 4.099 14 C -0.141 4.141 15 C 0.169 3.831 16 N -0.591 5.591 17 C -0.253 4.253 18 H 0.064 0.936 19 C 0.003 3.997 20 N -0.903 5.903 21 Si 0.902 3.098 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.154 3.846 26 C -0.214 4.214 27 S 0.067 5.933 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.417 0.583 34 H 0.413 0.587 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.047 0.953 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.086 0.914 42 H 0.017 0.983 43 H 0.254 0.746 44 H 0.019 0.981 45 H 0.051 0.949 46 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.862 -21.557 -7.623 22.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.008 4.008 3 N -0.335 5.335 4 C -0.025 4.025 5 N -0.255 5.255 6 C -0.068 4.068 7 C 0.372 3.628 8 O -0.421 6.421 9 N -0.352 5.352 10 C 0.002 3.998 11 C -0.138 4.138 12 H 0.092 0.908 13 C -0.137 4.137 14 C -0.180 4.180 15 C 0.043 3.957 16 N -0.313 5.313 17 C -0.382 4.382 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.547 5.547 21 Si 0.731 3.269 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.027 3.973 26 C -0.358 4.358 27 S 0.314 5.686 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.256 0.744 34 H 0.249 0.751 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.104 0.896 42 H 0.036 0.964 43 H 0.064 0.936 44 H 0.037 0.963 45 H 0.070 0.930 46 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 2.253 -22.204 -7.501 23.545 hybrid contribution -1.239 1.096 0.029 1.655 sum 1.013 -21.108 -7.472 22.414 Atomic orbital electron populations 1.21962 0.93176 1.03621 1.03424 1.21534 0.95925 0.81280 1.02035 1.44017 1.00356 1.08894 1.80188 1.24123 0.90627 0.90379 0.97364 1.66622 1.09825 1.22607 1.26447 1.19938 0.87449 0.94651 1.04807 1.17132 0.86333 0.82462 0.76921 1.90804 1.12704 1.87277 1.51267 1.45916 1.11490 1.05153 1.72690 1.21531 0.94667 0.81742 1.01879 1.22022 0.96937 0.93036 1.01794 0.90821 1.21340 0.97534 0.94474 1.00397 1.22165 0.97963 0.96140 1.01776 1.20793 0.95379 0.88799 0.90711 1.44042 1.03992 1.00475 1.82822 1.19133 0.83070 1.03146 1.32889 0.91804 1.25037 0.97926 0.99336 0.97266 1.70029 1.34476 1.14753 1.35437 0.86385 0.85745 0.77061 0.77662 1.20942 1.21648 1.21053 1.20990 0.92833 0.91115 0.92352 1.26631 1.04023 0.92909 1.12218 1.84861 0.97754 1.10934 1.75065 0.90260 0.91329 0.91428 0.91414 0.91373 0.74414 0.75075 0.91781 0.91364 0.93428 0.92454 0.92771 0.93206 0.89627 0.96448 0.93610 0.96333 0.93018 0.79552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.62 10.03 37.16 0.37 -0.25 16 2 C 0.12 0.61 6.31 -4.04 -0.03 0.58 16 3 N -0.69 -5.67 5.71 -61.01 -0.35 -6.02 16 4 C 0.35 3.83 8.42 -88.02 -0.74 3.09 16 5 N -0.53 -7.20 10.02 -10.59 -0.11 -7.30 16 6 C 0.06 0.90 6.67 -84.59 -0.56 0.33 16 7 C 0.59 9.52 7.79 -12.64 -0.10 9.42 16 8 O -0.54 -9.91 16.66 5.23 0.09 -9.83 16 9 N -0.70 -10.96 5.33 -61.46 -0.33 -11.28 16 10 C 0.13 1.97 5.06 -4.04 -0.02 1.95 16 11 C -0.12 -2.02 2.38 -90.28 -0.22 -2.24 16 12 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 13 C -0.10 -1.68 5.16 -26.69 -0.14 -1.82 16 14 C -0.14 -2.71 6.08 -26.61 -0.16 -2.87 16 15 C 0.17 4.05 5.30 -3.71 -0.02 4.04 16 16 N -0.59 -14.83 2.99 -172.05 -0.51 -15.34 16 17 C -0.25 -6.93 9.58 -15.06 -0.14 -7.08 16 18 H 0.06 1.71 7.89 -52.48 -0.41 1.30 16 19 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 20 N -0.90 -26.31 11.20 55.49 0.62 -25.69 16 21 Si 0.90 21.63 29.59 -169.99 -5.03 16.60 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.15 3.23 5.63 -3.48 -0.02 3.21 16 26 C -0.21 -2.55 10.83 29.60 0.32 -2.23 16 27 S 0.07 0.62 22.62 -107.50 -2.43 -1.81 16 28 H 0.08 0.20 8.14 -51.92 -0.42 -0.22 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.42 3.30 8.60 -40.82 -0.35 2.95 16 34 H 0.41 6.38 7.20 -40.82 -0.29 6.09 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 41 H 0.09 2.30 6.06 -51.93 -0.31 1.98 16 42 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 43 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.05 1.07 7.16 -51.93 -0.37 0.70 16 46 H 0.19 2.00 8.01 -52.49 -0.42 1.58 16 LS Contribution 386.81 15.07 5.83 5.83 Total: -1.00 -32.24 386.81 -10.98 -43.22 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -7.22 Total: 5.49 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -1.54 Total: 6.13 kcal Atomic # 7 Polarization: -64.95 SS G_CDS: -0.67 Total: -65.63 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Atomic # 16 Polarization: 0.62 SS G_CDS: -2.43 Total: -1.81 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.24 -10.98 -43.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269379174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.967 kcal (2) G-P(sol) polarization free energy of solvation -32.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds