Wall clock time and date at job start Tue Mar 31 2020 21:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.46939 * 2 1 4 4 C 1.38469 * 119.99812 * 179.97438 * 3 2 1 5 5 N 1.29443 * 125.18286 * 180.32583 * 4 3 2 6 6 C 1.33634 * 116.88934 * 180.18965 * 5 4 3 7 7 C 1.47166 * 122.47353 * 179.74793 * 6 5 4 8 8 O 1.21657 * 119.99843 * 179.71790 * 7 6 5 9 9 N 1.34774 * 120.00244 * 359.71786 * 7 6 5 10 10 C 1.46499 * 120.00141 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47477 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.49218 * 305.06443 * 11 10 9 13 13 C 1.53032 * 109.49995 * 184.99769 * 11 10 9 14 14 C 1.53043 * 109.53877 * 178.68217 * 13 11 10 15 15 C 1.53186 * 109.31437 * 61.36566 * 14 13 11 16 16 N 1.46927 * 108.77479 * 305.36434 * 15 14 13 17 17 C 1.36936 * 120.63328 * 233.58439 * 16 15 14 18 18 H 1.08004 * 119.99687 * 151.83020 * 17 16 15 19 19 C 1.38804 * 119.99782 * 331.83092 * 17 16 15 20 20 N 1.31622 * 120.00247 * 343.08514 * 19 17 16 21 21 Si 1.86810 * 119.99877 * 163.08468 * 19 17 16 22 22 H 1.48499 * 109.47137 * 59.99982 * 21 19 17 23 23 H 1.48496 * 109.47053 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46625 * 300.00079 * 21 19 17 25 25 C 1.46933 * 118.73465 * 53.86032 * 16 15 14 26 26 C 1.35050 * 115.04401 * 359.48785 * 6 5 4 27 27 S 1.76048 * 125.18873 * 359.97438 * 4 3 2 28 28 H 1.09007 * 109.46921 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46608 * 299.99209 * 1 2 3 30 30 H 1.08997 * 109.47213 * 59.99905 * 1 2 3 31 31 H 1.09005 * 109.46990 * 240.00237 * 2 1 3 32 32 H 1.08994 * 109.47303 * 120.00858 * 2 1 3 33 33 H 0.97002 * 120.00312 * 0.02562 * 3 2 1 34 34 H 0.97002 * 119.99805 * 359.97438 * 9 7 6 35 35 H 1.08995 * 109.47309 * 59.99182 * 10 9 7 36 36 H 1.09002 * 109.46648 * 299.99953 * 10 9 7 37 37 H 1.09003 * 109.46153 * 58.66055 * 13 11 10 38 38 H 1.08997 * 109.44923 * 298.69567 * 13 11 10 39 39 H 1.08996 * 109.49433 * 301.41091 * 14 13 11 40 40 H 1.09007 * 109.52229 * 181.32916 * 14 13 11 41 41 H 1.09001 * 109.59236 * 185.57892 * 15 14 13 42 42 H 1.09008 * 109.70642 * 65.21545 * 15 14 13 43 43 H 0.97001 * 120.00021 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.58974 * 65.93163 * 25 16 15 45 45 H 1.09003 * 109.58500 * 186.35202 * 25 16 15 46 46 H 1.08002 * 125.86657 * 180.27076 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3797 1.6342 0.0005 5 7 3.9197 2.8106 0.0066 6 6 5.2550 2.8628 0.0021 7 6 5.9961 4.1342 0.0026 8 8 7.2127 4.1292 0.0036 9 7 5.3271 5.3042 0.0020 10 6 6.0649 6.5699 0.0020 11 6 5.0756 7.7370 0.0006 12 1 4.3908 7.6323 -0.8409 13 6 5.8416 9.0558 -0.1251 14 6 4.8509 10.2218 -0.1596 15 6 4.0540 10.2485 1.1483 16 7 3.4309 8.9331 1.3493 17 6 2.0836 8.8255 1.5692 18 1 1.5581 7.9294 1.2736 19 6 1.3933 9.8681 2.1719 20 7 2.0511 10.8012 2.8268 21 14 -0.4693 9.9468 2.0535 22 1 -1.0562 8.7273 2.6647 23 1 -0.9608 11.1482 2.7747 24 1 -0.8715 10.0277 0.6263 25 6 4.2820 7.7358 1.3160 26 6 5.8740 1.6625 0.0026 27 16 4.6400 0.4051 0.0019 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8898 33 1 1.3880 2.1185 0.0004 34 1 4.3571 5.3082 0.0009 35 1 6.6922 6.6247 -0.8876 36 1 6.6914 6.6252 0.8923 37 1 6.4272 9.0495 -1.0444 38 1 6.5084 9.1711 0.7293 39 1 4.1679 10.0941 -0.9993 40 1 5.3955 11.1593 -0.2729 41 1 3.2803 11.0140 1.0894 42 1 4.7220 10.4674 1.9814 43 1 1.5687 11.5296 3.2482 44 1 4.9701 7.7530 2.1611 45 1 3.6589 6.8430 1.3676 46 1 6.9419 1.5013 0.0036 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269379174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:44 Heat of formation + Delta-G solvation = 0.548655 kcal Electronic energy + Delta-G solvation = -26723.664024 eV Core-core repulsion = 22967.249563 eV Total energy + Delta-G solvation = -3756.414461 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.37256 -39.91501 -39.18812 -37.31542 -36.28759 -34.66882 -32.40969 -32.28896 -31.83417 -29.76397 -27.61692 -27.19013 -25.39141 -23.92733 -23.79674 -23.10135 -22.28720 -21.06513 -20.41675 -19.60617 -18.65876 -17.81990 -17.46290 -16.86111 -16.74443 -16.66091 -16.27909 -16.11413 -15.80234 -15.54146 -15.13143 -15.05151 -14.75639 -14.51151 -14.15517 -14.01285 -13.75118 -13.57868 -13.25587 -13.06917 -13.02376 -12.85642 -12.67144 -12.63872 -12.48433 -12.31011 -11.98448 -11.83405 -11.59740 -11.46362 -11.34007 -11.16023 -11.07501 -10.75763 -10.52685 -10.28435 -10.07639 -8.82361 -8.67269 -7.86681 -5.33096 -0.32921 0.01525 0.52137 1.08159 1.46082 1.48944 1.55705 1.90129 2.28828 2.36825 2.51152 3.27599 3.41478 3.59619 3.98234 3.99225 4.00060 4.06057 4.17188 4.23410 4.32942 4.41451 4.45945 4.56083 4.60124 4.72754 4.76313 4.87258 4.88463 4.91366 5.01199 5.01235 5.10811 5.21947 5.26489 5.32443 5.37375 5.45246 5.56465 5.60708 5.66543 5.78781 6.20164 6.38893 6.43900 6.78677 7.11098 7.15192 7.86163 8.38609 9.19296 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009708 B = 0.003100 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.466780 B = 9028.994426 C =11610.851534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.110 3.890 3 N -0.687 5.687 4 C 0.334 3.666 5 N -0.560 5.560 6 C 0.038 3.962 7 C 0.587 3.413 8 O -0.570 6.570 9 N -0.702 5.702 10 C 0.135 3.865 11 C -0.100 4.100 12 H 0.073 0.927 13 C -0.096 4.096 14 C -0.130 4.130 15 C 0.173 3.827 16 N -0.609 5.609 17 C -0.265 4.265 18 H 0.066 0.934 19 C -0.050 4.050 20 N -0.936 5.936 21 Si 0.967 3.033 22 H -0.275 1.275 23 H -0.294 1.294 24 H -0.277 1.277 25 C 0.154 3.846 26 C -0.222 4.222 27 S 0.139 5.861 28 H 0.096 0.904 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.416 0.584 34 H 0.413 0.587 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.072 0.928 41 H 0.052 0.948 42 H -0.006 1.006 43 H 0.250 0.750 44 H 0.006 0.994 45 H 0.048 0.952 46 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.496 -23.787 -9.018 25.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.013 4.013 3 N -0.328 5.328 4 C -0.040 4.040 5 N -0.288 5.288 6 C -0.094 4.094 7 C 0.371 3.629 8 O -0.451 6.451 9 N -0.352 5.352 10 C 0.011 3.989 11 C -0.120 4.120 12 H 0.092 0.908 13 C -0.134 4.134 14 C -0.169 4.169 15 C 0.047 3.953 16 N -0.332 5.332 17 C -0.395 4.395 18 H 0.084 0.916 19 C -0.245 4.245 20 N -0.582 5.582 21 Si 0.795 3.205 22 H -0.201 1.201 23 H -0.220 1.220 24 H -0.203 1.203 25 C 0.029 3.971 26 C -0.366 4.366 27 S 0.387 5.613 28 H 0.115 0.885 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.255 0.745 34 H 0.249 0.751 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.070 0.930 42 H 0.012 0.988 43 H 0.059 0.941 44 H 0.024 0.976 45 H 0.067 0.933 46 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 1.863 -24.485 -8.913 26.123 hybrid contribution -1.153 1.656 0.501 2.079 sum 0.710 -22.829 -8.412 24.340 Atomic orbital electron populations 1.21947 0.92010 1.04633 1.03104 1.21793 0.96906 0.79755 1.02827 1.44326 0.99385 1.10190 1.78916 1.24447 0.91935 0.90729 0.96897 1.66567 1.09673 1.24370 1.28217 1.19716 0.88043 0.94295 1.07312 1.17442 0.86162 0.83178 0.76093 1.90772 1.13778 1.87786 1.52725 1.45910 1.11456 1.05198 1.72600 1.21401 0.94067 0.81155 1.02279 1.21782 0.96799 0.94282 0.99133 0.90846 1.21337 0.97030 0.92814 1.02220 1.21997 0.97995 0.98464 0.98406 1.20648 0.94400 0.87680 0.92568 1.44308 1.03943 1.01841 1.83094 1.19486 0.84510 1.03217 1.32277 0.91617 1.25811 1.02239 0.99199 0.97273 1.70193 1.35980 1.15351 1.36658 0.85348 0.80496 0.76912 0.77744 1.20062 1.22049 1.20279 1.21066 0.92429 0.89541 0.94097 1.26919 1.05322 0.93584 1.10767 1.84557 0.95009 1.08035 1.73702 0.88541 0.91841 0.91556 0.90348 0.90650 0.74490 0.75056 0.90312 0.91963 0.89912 0.92411 0.92927 0.90989 0.92974 0.98830 0.94125 0.97588 0.93314 0.78865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.87 10.03 71.98 0.72 -0.15 16 2 C 0.11 0.90 6.31 86.38 0.55 1.44 16 3 N -0.69 -10.23 5.71 -346.93 -1.98 -12.21 16 4 C 0.33 6.89 8.42 179.44 1.51 8.40 16 5 N -0.56 -15.02 10.02 -187.40 -1.88 -16.90 16 6 C 0.04 1.06 6.67 40.48 0.27 1.33 16 7 C 0.59 18.95 7.79 86.59 0.67 19.62 16 8 O -0.57 -20.79 16.66 -4.21 -0.07 -20.86 16 9 N -0.70 -21.75 5.33 -466.61 -2.49 -24.23 16 10 C 0.13 4.08 5.06 86.38 0.44 4.52 16 11 C -0.10 -3.34 2.38 -10.57 -0.03 -3.36 16 12 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 13 C -0.10 -3.06 5.16 30.62 0.16 -2.90 16 14 C -0.13 -4.84 6.08 30.67 0.19 -4.65 16 15 C 0.17 8.49 5.30 86.36 0.46 8.95 16 16 N -0.61 -31.14 2.99 -698.24 -2.09 -33.23 16 17 C -0.26 -14.77 9.58 84.03 0.81 -13.96 16 18 H 0.07 3.56 7.89 -2.91 -0.02 3.53 16 19 C -0.05 -2.82 4.92 84.86 0.42 -2.40 16 20 N -0.94 -56.21 11.20 21.65 0.24 -55.97 16 21 Si 0.97 45.04 29.59 68.60 2.03 47.07 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 23 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 25 C 0.15 6.56 5.63 86.51 0.49 7.05 16 26 C -0.22 -5.04 10.83 67.09 0.73 -4.31 16 27 S 0.14 2.26 22.62 -56.49 -1.28 0.99 16 28 H 0.10 0.22 8.14 -2.38 -0.02 0.20 16 29 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.42 6.20 8.60 -92.71 -0.80 5.40 16 34 H 0.41 12.81 7.20 -92.71 -0.67 12.14 16 35 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 41 H 0.05 2.90 6.06 -2.39 -0.01 2.88 16 42 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 43 H 0.25 14.54 8.31 -92.71 -0.77 13.76 16 44 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 45 H 0.05 2.06 7.16 -2.39 -0.02 2.04 16 46 H 0.19 3.95 8.01 -2.91 -0.02 3.93 16 Total: -1.00 -71.10 386.81 -0.60 -71.69 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: -0.46 Total: 24.06 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: 7.37 Total: 19.58 kcal Atomic # 7 Polarization: -134.35 SS G_CDS: -8.19 Total: -142.54 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.07 Total: -20.86 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -1.28 Total: 0.99 kcal Total: -71.10 -0.60 -71.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269379174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.244 kcal (2) G-P(sol) polarization free energy of solvation -71.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds