Wall clock time and date at job start Tue Mar 31 2020 21:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.47600 * 2 1 4 4 C 1.37839 * 120.00384 * 180.02562 * 3 2 1 5 5 N 1.30232 * 124.74823 * 0.04429 * 4 3 2 6 6 C 1.30878 * 117.26646 * 179.66616 * 5 4 3 7 7 C 1.36711 * 114.02321 * 0.52808 * 6 5 4 8 8 C 1.46226 * 126.10545 * 179.78328 * 7 6 5 9 9 O 1.21754 * 120.00323 * 359.71289 * 8 7 6 10 10 N 1.34774 * 120.00126 * 179.71592 * 8 7 6 11 11 C 1.46499 * 120.00204 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.46954 * 179.97438 * 11 10 8 13 13 H 1.08994 * 109.49750 * 54.93231 * 12 11 10 14 14 C 1.53040 * 109.49666 * 174.99905 * 12 11 10 15 15 C 1.53039 * 109.52638 * 181.35378 * 14 12 11 16 16 C 1.53188 * 109.31180 * 298.61146 * 15 14 12 17 17 N 1.46924 * 108.76395 * 54.66285 * 16 15 14 18 18 C 1.36934 * 120.63505 * 126.40273 * 17 16 15 19 19 H 1.08001 * 120.00234 * 332.58400 * 18 17 16 20 20 C 1.38815 * 120.00129 * 152.58154 * 18 17 16 21 21 N 1.31620 * 120.00110 * 159.34084 * 20 18 17 22 22 Si 1.86801 * 120.00183 * 339.34443 * 20 18 17 23 23 H 1.48499 * 109.47090 * 92.95872 * 22 20 18 24 24 H 1.48496 * 109.47264 * 212.96211 * 22 20 18 25 25 H 1.48503 * 109.46848 * 332.95760 * 22 20 18 26 26 C 1.46931 * 118.73519 * 306.37490 * 17 16 15 27 27 S 1.70915 * 124.74998 * 179.97438 * 4 3 2 28 28 H 1.08992 * 109.47480 * 59.99388 * 1 2 3 29 29 H 1.09000 * 109.47436 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46472 * 299.99784 * 1 2 3 31 31 H 1.09003 * 109.46913 * 239.99924 * 2 1 3 32 32 H 1.09005 * 109.47296 * 120.00333 * 2 1 3 33 33 H 0.97001 * 119.99604 * 0.02562 * 3 2 1 34 34 H 1.07996 * 122.98949 * 180.32691 * 6 5 4 35 35 H 0.97006 * 119.99433 * 359.97438 * 10 8 7 36 36 H 1.08997 * 109.47191 * 59.99967 * 11 10 8 37 37 H 1.08995 * 109.47090 * 299.99857 * 11 10 8 38 38 H 1.09002 * 109.46098 * 301.37087 * 14 12 11 39 39 H 1.09008 * 109.45814 * 61.34036 * 14 12 11 40 40 H 1.09002 * 109.49901 * 58.58147 * 15 14 12 41 41 H 1.09004 * 109.49708 * 178.67634 * 15 14 12 42 42 H 1.08998 * 109.60519 * 294.86713 * 16 15 14 43 43 H 1.09007 * 109.70187 * 174.50664 * 16 15 14 44 44 H 0.96996 * 120.00050 * 180.02562 * 21 20 18 45 45 H 1.08998 * 109.58832 * 293.82428 * 26 17 16 46 46 H 1.09001 * 109.70177 * 173.46737 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 3.3736 1.6330 -0.0005 5 7 4.2989 0.7166 -0.0019 6 6 5.5435 1.1212 -0.0090 7 6 5.6868 2.4808 -0.0026 8 6 6.9520 3.2139 -0.0035 9 8 8.0074 2.6068 -0.0053 10 7 6.9499 4.5616 -0.0024 11 6 8.2175 5.2961 -0.0039 12 6 7.9354 6.8000 -0.0028 13 1 7.2895 7.0483 0.8392 14 6 9.2540 7.5668 0.1213 15 6 8.9701 9.0702 0.1565 16 6 8.2894 9.4879 -1.1508 17 7 7.0968 8.6534 -1.3503 18 6 5.8725 9.2268 -1.5686 19 1 5.6597 10.2108 -1.1777 20 6 4.9051 8.5433 -2.2922 21 7 3.6367 8.8732 -2.1707 22 14 5.4032 7.1550 -3.4386 23 1 5.3282 5.8621 -2.7120 24 1 4.4839 7.1217 -4.6044 25 1 6.7934 7.3777 -3.9107 26 6 7.2427 7.1919 -1.3118 27 16 4.0748 3.1917 -0.0012 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.3881 2.1184 0.0004 34 1 6.3828 0.4415 -0.0159 35 1 6.1090 5.0453 -0.0013 36 1 8.7879 5.0345 -0.8951 37 1 8.7909 5.0330 0.8848 38 1 9.7608 7.2714 1.0400 39 1 9.8896 7.3372 -0.7340 40 1 8.3142 9.2971 0.9970 41 1 9.9075 9.6150 0.2685 42 1 8.9783 9.3458 -1.9834 43 1 7.9964 10.5363 -1.0939 44 1 2.9607 8.3954 -2.6761 45 1 7.8463 6.8625 -2.1575 46 1 6.2599 6.7231 -1.3597 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269506672.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:48 Heat of formation + Delta-G solvation = 3.234968 kcal Electronic energy + Delta-G solvation = -27103.605714 eV Core-core repulsion = 23347.307741 eV Total energy + Delta-G solvation = -3756.297974 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.22487 -40.47257 -39.47474 -37.41752 -36.24219 -34.84102 -32.99394 -32.41895 -32.01038 -30.21940 -27.36194 -27.08839 -25.89259 -24.41601 -24.00875 -22.75331 -22.19552 -21.03884 -20.59680 -20.15128 -18.83591 -18.05548 -17.78415 -17.27689 -16.74622 -16.52983 -16.34023 -16.09333 -15.88711 -15.51081 -15.48380 -15.16238 -14.91244 -14.78756 -14.64600 -14.48178 -13.94040 -13.63458 -13.37284 -13.25964 -13.08592 -12.77812 -12.68805 -12.61951 -12.55431 -12.20172 -12.09010 -11.69672 -11.61780 -11.48144 -11.31247 -11.27932 -11.23174 -10.79188 -10.64919 -10.54988 -10.19486 -8.91916 -8.89033 -8.16931 -5.47189 -0.61157 -0.14869 0.51820 1.25159 1.38410 1.43799 1.44975 1.98237 2.13089 2.16896 2.37958 3.03512 3.32347 3.42622 3.77890 3.87468 3.91749 3.98701 4.03829 4.19235 4.24396 4.31516 4.45898 4.49028 4.49736 4.60193 4.71769 4.74038 4.77300 4.88744 4.98265 4.98719 5.01506 5.10513 5.17667 5.21289 5.23982 5.30972 5.36768 5.59734 5.63610 5.87857 5.93977 6.13666 6.30438 6.73775 6.92340 7.00870 7.62867 8.04529 9.02865 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012384 B = 0.003534 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.403613 B = 7921.666333 C = 9564.192252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.123 3.877 3 N -0.671 5.671 4 C 0.331 3.669 5 N -0.567 5.567 6 C 0.186 3.814 7 C -0.372 4.372 8 C 0.604 3.396 9 O -0.569 6.569 10 N -0.726 5.726 11 C 0.132 3.868 12 C -0.107 4.107 13 H 0.074 0.926 14 C -0.098 4.098 15 C -0.124 4.124 16 C 0.137 3.863 17 N -0.620 5.620 18 C -0.247 4.247 19 H 0.056 0.944 20 C -0.022 4.022 21 N -0.949 5.949 22 Si 0.930 3.070 23 H -0.271 1.271 24 H -0.312 1.312 25 H -0.272 1.272 26 C 0.131 3.869 27 S 0.136 5.864 28 H 0.066 0.934 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.427 0.573 34 H 0.198 0.802 35 H 0.399 0.601 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.053 0.947 41 H 0.090 0.910 42 H 0.031 0.969 43 H 0.054 0.946 44 H 0.262 0.738 45 H 0.023 0.977 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.901 -15.787 7.259 17.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.001 4.001 3 N -0.309 5.309 4 C -0.038 4.038 5 N -0.293 5.293 6 C 0.025 3.975 7 C -0.498 4.498 8 C 0.392 3.608 9 O -0.451 6.451 10 N -0.376 5.376 11 C 0.008 3.992 12 C -0.128 4.128 13 H 0.092 0.908 14 C -0.136 4.136 15 C -0.163 4.163 16 C 0.013 3.987 17 N -0.344 5.344 18 C -0.377 4.377 19 H 0.074 0.926 20 C -0.218 4.218 21 N -0.595 5.595 22 Si 0.760 3.240 23 H -0.197 1.197 24 H -0.241 1.241 25 H -0.197 1.197 26 C 0.005 3.995 27 S 0.387 5.613 28 H 0.085 0.915 29 H 0.110 0.890 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.267 0.733 34 H 0.215 0.785 35 H 0.234 0.766 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.108 0.892 42 H 0.049 0.951 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.041 0.959 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.014 -15.876 7.207 17.465 hybrid contribution -0.243 -0.391 -0.963 1.067 sum -1.257 -16.267 6.244 17.469 Atomic orbital electron populations 1.22002 0.91848 1.04614 1.03272 1.21578 0.95925 0.80245 1.02394 1.44333 0.99285 1.10820 1.76500 1.24095 0.91686 0.93003 0.95055 1.66311 0.99739 1.34347 1.28950 1.22280 0.93379 0.91669 0.90136 1.25130 0.95860 0.98014 1.30819 1.16724 0.87012 0.81702 0.75396 1.90777 1.32378 1.68800 1.53192 1.46061 1.10731 1.05826 1.74985 1.21481 0.84773 0.90157 1.02779 1.21818 0.99380 0.92849 0.98726 0.90791 1.21380 0.94648 0.94571 1.02991 1.21888 1.00680 0.96196 0.97558 1.21193 0.87235 0.94337 0.95983 1.44498 1.04841 1.01068 1.84038 1.18901 0.89140 1.02563 1.27092 0.92636 1.25718 0.95126 1.00801 1.00116 1.69937 1.00313 1.45080 1.44188 0.86183 0.77318 0.80777 0.79755 1.19712 1.24111 1.19733 1.21362 0.98135 0.84352 0.95611 1.84375 0.98191 1.06320 1.72401 0.91456 0.88955 0.91140 0.91751 0.91372 0.73299 0.78519 0.76592 0.91706 0.89602 0.89535 0.91448 0.92783 0.89156 0.95080 0.92726 0.92901 0.95922 0.93381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 10.03 71.98 0.72 -0.41 16 2 C 0.12 1.58 6.64 86.38 0.57 2.15 16 3 N -0.67 -11.02 5.68 -351.35 -2.00 -13.01 16 4 C 0.33 7.76 8.05 179.43 1.44 9.20 16 5 N -0.57 -14.74 10.06 -200.64 -2.02 -16.76 16 6 C 0.19 5.06 11.14 84.48 0.94 6.00 16 7 C -0.37 -11.15 6.50 23.99 0.16 -10.99 16 8 C 0.60 20.34 7.77 86.32 0.67 21.01 16 9 O -0.57 -21.44 16.87 -4.52 -0.08 -21.51 16 10 N -0.73 -23.61 5.33 -467.50 -2.49 -26.10 16 11 C 0.13 3.94 5.07 86.38 0.44 4.38 16 12 C -0.11 -3.43 2.37 -10.71 -0.03 -3.45 16 13 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 14 C -0.10 -2.58 5.17 30.62 0.16 -2.42 16 15 C -0.12 -3.53 6.08 30.67 0.19 -3.34 16 16 C 0.14 5.07 6.52 86.36 0.56 5.64 16 17 N -0.62 -28.48 2.77 -699.09 -1.94 -30.41 16 18 C -0.25 -13.72 10.03 84.03 0.84 -12.88 16 19 H 0.06 3.36 8.06 -2.91 -0.02 3.33 16 20 C -0.02 -1.27 5.23 84.86 0.44 -0.82 16 21 N -0.95 -57.69 13.97 21.65 0.30 -57.39 16 22 Si 0.93 46.22 24.35 68.60 1.67 47.89 16 23 H -0.27 -12.59 6.62 99.48 0.66 -11.93 16 24 H -0.31 -15.85 7.11 99.48 0.71 -15.15 16 25 H -0.27 -13.41 6.64 99.48 0.66 -12.75 16 26 C 0.13 5.39 3.29 86.36 0.28 5.67 16 27 S 0.14 3.61 22.33 -56.49 -1.26 2.35 16 28 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.09 0.44 8.14 -2.39 -0.02 0.43 16 30 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.43 5.26 8.59 -92.71 -0.80 4.46 16 34 H 0.20 4.75 8.06 -2.91 -0.02 4.73 16 35 H 0.40 13.26 6.87 -92.70 -0.64 12.63 16 36 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.09 2.30 8.14 -2.39 -0.02 2.29 16 38 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 40 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 42 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.05 2.07 7.93 -2.38 -0.02 2.05 16 44 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 45 H 0.02 0.96 7.07 -2.39 -0.02 0.94 16 46 H 0.05 2.18 3.71 -2.39 -0.01 2.17 16 Total: -1.00 -71.42 380.04 -0.93 -72.35 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: -0.52 Total: 22.88 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: 7.40 Total: 19.73 kcal Atomic # 7 Polarization: -135.54 SS G_CDS: -8.14 Total: -143.68 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.08 Total: -21.51 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.67 Total: 47.89 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -1.26 Total: 2.35 kcal Total: -71.42 -0.93 -72.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269506672.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.580 kcal (2) G-P(sol) polarization free energy of solvation -71.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds