Wall clock time and date at job start Tue Mar 31 2020 21:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46733 * 2 1 4 4 C 1.37846 * 119.99456 * 179.97438 * 3 2 1 5 5 N 1.30224 * 124.74931 * 0.04337 * 4 3 2 6 6 C 1.30886 * 117.26111 * 179.68945 * 5 4 3 7 7 C 1.36707 * 114.02741 * 0.48305 * 6 5 4 8 8 C 1.46221 * 126.10662 * 179.81926 * 7 6 5 9 9 O 1.21749 * 120.00160 * 359.71825 * 8 7 6 10 10 N 1.34774 * 120.00103 * 179.71370 * 8 7 6 11 11 C 1.46499 * 120.00141 * 180.02562 * 10 8 7 12 12 C 1.53007 * 109.47178 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.51960 * 305.08379 * 12 11 10 14 14 C 1.53038 * 109.50110 * 185.00202 * 12 11 10 15 15 C 1.53036 * 109.54003 * 178.68265 * 14 12 11 16 16 C 1.53192 * 109.31293 * 61.36202 * 15 14 12 17 17 N 1.46924 * 108.77591 * 305.36430 * 16 15 14 18 18 C 1.36939 * 120.62993 * 233.58522 * 17 16 15 19 19 H 1.08002 * 119.99754 * 151.83452 * 18 17 16 20 20 C 1.38804 * 119.99958 * 331.83412 * 18 17 16 21 21 N 1.31622 * 120.00247 * 343.08098 * 20 18 17 22 22 Si 1.86810 * 119.99877 * 163.08052 * 20 18 17 23 23 H 1.48493 * 109.47005 * 90.00021 * 22 20 18 24 24 H 1.48501 * 109.47040 * 209.99959 * 22 20 18 25 25 H 1.48500 * 109.46752 * 329.99813 * 22 20 18 26 26 C 1.46920 * 118.73855 * 53.86375 * 17 16 15 27 27 S 1.70924 * 124.74224 * 179.97438 * 4 3 2 28 28 H 1.09004 * 109.47191 * 300.00012 * 1 2 3 29 29 H 1.09002 * 109.47305 * 59.99944 * 1 2 3 30 30 H 1.08999 * 109.47019 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46811 * 240.00290 * 2 1 3 32 32 H 1.08996 * 109.46964 * 119.99826 * 2 1 3 33 33 H 0.97000 * 119.99935 * 0.02562 * 3 2 1 34 34 H 1.08005 * 122.98508 * 180.28173 * 6 5 4 35 35 H 0.97003 * 119.99813 * 0.02562 * 10 8 7 36 36 H 1.08996 * 109.47340 * 60.00547 * 11 10 8 37 37 H 1.09003 * 109.47133 * 299.99741 * 11 10 8 38 38 H 1.08998 * 109.46122 * 58.65861 * 14 12 11 39 39 H 1.09004 * 109.44451 * 298.69553 * 14 12 11 40 40 H 1.08996 * 109.49733 * 301.41024 * 15 14 12 41 41 H 1.09005 * 109.52294 * 181.33131 * 15 14 12 42 42 H 1.09001 * 109.58625 * 185.57745 * 16 15 14 43 43 H 1.08997 * 109.70196 * 65.22177 * 16 15 14 44 44 H 0.97001 * 120.00021 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.58855 * 65.92358 * 26 17 16 46 46 H 1.08998 * 109.58990 * 186.35233 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3735 1.6331 0.0005 5 7 4.2988 0.7168 0.0003 6 6 5.5435 1.1216 -0.0055 7 6 5.6867 2.4811 0.0001 8 6 6.9518 3.2143 -0.0004 9 8 8.0072 2.6073 -0.0011 10 7 6.9496 4.5620 -0.0003 11 6 8.2172 5.2966 -0.0014 12 6 7.9351 6.8004 -0.0003 13 1 7.2866 7.0500 -0.8402 14 6 9.2533 7.5675 -0.1273 15 6 8.9695 9.0710 -0.1593 16 6 8.2923 9.4868 1.1504 17 7 7.1003 8.6519 1.3522 18 6 5.8766 9.2250 1.5748 19 1 4.9760 8.7069 1.2801 20 6 5.7939 10.4718 2.1792 21 7 6.8284 10.9563 2.8331 22 14 4.2141 11.4623 2.0646 23 1 3.3333 11.1236 3.2110 24 1 4.5352 12.9118 2.0983 25 1 3.5184 11.1389 0.7931 26 6 7.2471 7.1905 1.3167 27 16 4.0746 3.1920 0.0000 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.3879 2.1185 0.0004 34 1 6.3828 0.4419 -0.0107 35 1 6.1088 5.0456 0.0006 36 1 8.7883 5.0344 -0.8919 37 1 8.7900 5.0341 0.8881 38 1 9.7574 7.2734 -1.0478 39 1 9.8912 7.3364 0.7259 40 1 8.3114 9.2992 -0.9976 41 1 9.9065 9.6162 -0.2735 42 1 7.9989 10.5350 1.0932 43 1 8.9825 9.3454 1.9820 44 1 6.7704 11.8274 3.2557 45 1 7.8550 6.8638 2.1604 46 1 6.2639 6.7231 1.3694 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269506674.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:52 Heat of formation + Delta-G solvation = 20.377632 kcal Electronic energy + Delta-G solvation = -26461.386864 eV Core-core repulsion = 22705.832252 eV Total energy + Delta-G solvation = -3755.554612 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.16196 -39.26933 -37.73270 -36.66927 -34.77273 -33.00876 -31.71899 -30.58161 -30.43155 -29.12693 -25.84493 -25.29385 -24.85566 -23.54117 -22.17130 -21.54396 -20.80852 -19.76802 -19.44204 -18.84955 -17.07452 -16.76824 -16.55252 -15.91298 -15.43386 -15.32877 -15.26453 -14.84022 -14.51226 -14.36501 -14.02470 -13.70437 -13.53902 -13.42475 -12.84531 -12.78619 -12.36798 -12.34574 -12.30180 -12.17517 -12.10054 -11.66717 -11.27733 -11.02940 -10.71291 -10.54686 -10.49332 -10.26703 -10.21438 -10.16567 -9.94433 -9.79975 -9.57471 -9.55380 -9.41941 -8.92877 -8.47764 -8.02164 -6.67771 -5.80434 -3.23552 0.36739 0.75348 1.46587 2.47720 2.74935 3.29570 3.32480 3.34809 3.42107 3.43782 4.27537 4.46448 4.47895 4.60987 4.86981 4.95379 5.13271 5.24302 5.30215 5.31898 5.41959 5.44164 5.48035 5.51865 5.62274 5.77350 5.84222 5.96648 6.00981 6.24737 6.33026 6.37556 6.40816 6.50581 6.59335 6.62396 6.70563 6.77788 6.86267 6.96614 7.39557 7.53466 7.65885 7.67131 7.76992 8.26166 8.43307 9.19415 9.82939 10.40207 11.27768 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011179 B = 0.002819 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.089763 B = 9931.387975 C =12173.866849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.127 3.873 3 N -0.687 5.687 4 C 0.322 3.678 5 N -0.554 5.554 6 C 0.173 3.827 7 C -0.338 4.338 8 C 0.602 3.398 9 O -0.541 6.541 10 N -0.720 5.720 11 C 0.128 3.872 12 C -0.118 4.118 13 H 0.073 0.927 14 C -0.099 4.099 15 C -0.141 4.141 16 C 0.169 3.831 17 N -0.591 5.591 18 C -0.254 4.254 19 H 0.064 0.936 20 C 0.003 3.997 21 N -0.901 5.901 22 Si 0.901 3.099 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.153 3.847 27 S 0.140 5.860 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.416 0.584 34 H 0.188 0.812 35 H 0.399 0.601 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.047 0.953 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.050 0.950 42 H 0.086 0.914 43 H 0.018 0.982 44 H 0.254 0.746 45 H 0.020 0.980 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.739 -18.404 -7.660 21.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.001 3.999 3 N -0.326 5.326 4 C -0.047 4.047 5 N -0.279 5.279 6 C 0.014 3.986 7 C -0.464 4.464 8 C 0.388 3.612 9 O -0.421 6.421 10 N -0.371 5.371 11 C 0.005 3.995 12 C -0.139 4.139 13 H 0.091 0.909 14 C -0.137 4.137 15 C -0.181 4.181 16 C 0.043 3.957 17 N -0.314 5.314 18 C -0.383 4.383 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.731 3.269 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.027 3.973 27 S 0.391 5.609 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.254 0.746 34 H 0.204 0.796 35 H 0.234 0.766 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.104 0.896 43 H 0.036 0.964 44 H 0.064 0.936 45 H 0.038 0.962 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.656 -18.337 -7.555 21.639 hybrid contribution -0.788 0.515 0.055 0.943 sum -9.444 -17.822 -7.500 21.519 Atomic orbital electron populations 1.22037 0.94172 1.03566 1.02761 1.21408 0.94099 0.81544 1.02827 1.44022 1.00334 1.09364 1.78873 1.23880 0.90641 0.93582 0.96548 1.66239 0.99791 1.34294 1.27557 1.22070 0.92793 0.91947 0.91805 1.25313 0.95824 0.97558 1.27742 1.16545 0.86618 0.81825 0.76235 1.90823 1.31366 1.68403 1.51496 1.45960 1.10528 1.05567 1.75028 1.21498 0.84661 0.91383 1.01986 1.22045 0.98786 0.91355 1.01728 0.90859 1.21336 0.95635 0.96313 1.00451 1.22166 0.99627 0.94501 1.01764 1.20793 0.87048 0.97123 0.90709 1.44047 1.05648 0.98869 1.82799 1.19137 0.84648 1.01576 1.32952 0.91808 1.25050 0.97243 1.00049 0.97255 1.70036 1.30250 1.18895 1.35372 0.86327 0.83144 0.79583 0.77892 1.21407 1.21565 1.20483 1.20990 0.97231 0.86668 0.92450 1.84124 0.98752 1.06066 1.71942 0.91760 0.91818 0.90358 0.91193 0.91162 0.74617 0.79566 0.76617 0.91727 0.91323 0.93388 0.92419 0.92758 0.93171 0.89602 0.96420 0.93622 0.96218 0.93256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.58 10.03 37.16 0.37 -0.21 16 2 C 0.13 0.76 6.64 -4.04 -0.03 0.73 16 3 N -0.69 -4.95 5.68 -62.40 -0.35 -5.31 16 4 C 0.32 3.31 8.05 -87.98 -0.71 2.61 16 5 N -0.55 -6.62 10.06 -14.76 -0.15 -6.77 16 6 C 0.17 2.15 11.14 -18.51 -0.21 1.94 16 7 C -0.34 -4.43 6.50 -36.93 -0.24 -4.67 16 8 C 0.60 9.21 7.77 -13.06 -0.10 9.11 16 9 O -0.54 -9.78 16.87 5.14 0.09 -9.69 16 10 N -0.72 -10.42 5.33 -61.76 -0.33 -10.75 16 11 C 0.13 1.93 5.07 -4.04 -0.02 1.91 16 12 C -0.12 -1.96 2.39 -90.27 -0.22 -2.18 16 13 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 14 C -0.10 -1.63 5.16 -26.69 -0.14 -1.77 16 15 C -0.14 -2.64 6.08 -26.61 -0.16 -2.81 16 16 C 0.17 3.97 5.30 -3.71 -0.02 3.95 16 17 N -0.59 -14.45 2.99 -172.06 -0.51 -14.97 16 18 C -0.25 -6.78 9.58 -15.06 -0.14 -6.92 16 19 H 0.06 1.66 7.89 -52.49 -0.41 1.24 16 20 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 21 N -0.90 -25.88 11.20 55.49 0.62 -25.26 16 22 Si 0.90 21.22 29.59 -169.99 -5.03 16.19 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 C 0.15 3.10 5.63 -3.49 -0.02 3.08 16 27 S 0.14 1.48 22.33 -107.50 -2.40 -0.92 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.42 2.08 8.59 -40.82 -0.35 1.73 16 34 H 0.19 2.10 8.06 -52.48 -0.42 1.67 16 35 H 0.40 5.41 6.89 -40.82 -0.28 5.12 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.09 2.26 6.06 -51.93 -0.31 1.95 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.05 0.96 7.16 -51.93 -0.37 0.59 16 LS Contribution 386.55 15.07 5.83 5.83 Total: -1.00 -32.28 386.55 -11.17 -43.44 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -7.21 Total: 3.45 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -1.71 Total: 4.76 kcal Atomic # 7 Polarization: -62.34 SS G_CDS: -0.72 Total: -63.06 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.40 Total: -0.92 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.28 -11.17 -43.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269506674.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.821 kcal (2) G-P(sol) polarization free energy of solvation -32.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds