Wall clock time and date at job start Tue Mar 31 2020 21:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46733 * 2 1 4 4 C 1.37846 * 119.99456 * 179.97438 * 3 2 1 5 5 N 1.30224 * 124.74931 * 0.04337 * 4 3 2 6 6 C 1.30886 * 117.26111 * 179.68945 * 5 4 3 7 7 C 1.36707 * 114.02741 * 0.48305 * 6 5 4 8 8 C 1.46221 * 126.10662 * 179.81926 * 7 6 5 9 9 O 1.21749 * 120.00160 * 359.71825 * 8 7 6 10 10 N 1.34774 * 120.00103 * 179.71370 * 8 7 6 11 11 C 1.46499 * 120.00141 * 180.02562 * 10 8 7 12 12 C 1.53007 * 109.47178 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.51960 * 305.08379 * 12 11 10 14 14 C 1.53038 * 109.50110 * 185.00202 * 12 11 10 15 15 C 1.53036 * 109.54003 * 178.68265 * 14 12 11 16 16 C 1.53192 * 109.31293 * 61.36202 * 15 14 12 17 17 N 1.46924 * 108.77591 * 305.36430 * 16 15 14 18 18 C 1.36939 * 120.62993 * 233.58522 * 17 16 15 19 19 H 1.08002 * 119.99754 * 151.83452 * 18 17 16 20 20 C 1.38804 * 119.99958 * 331.83412 * 18 17 16 21 21 N 1.31622 * 120.00247 * 343.08098 * 20 18 17 22 22 Si 1.86810 * 119.99877 * 163.08052 * 20 18 17 23 23 H 1.48493 * 109.47005 * 90.00021 * 22 20 18 24 24 H 1.48501 * 109.47040 * 209.99959 * 22 20 18 25 25 H 1.48500 * 109.46752 * 329.99813 * 22 20 18 26 26 C 1.46920 * 118.73855 * 53.86375 * 17 16 15 27 27 S 1.70924 * 124.74224 * 179.97438 * 4 3 2 28 28 H 1.09004 * 109.47191 * 300.00012 * 1 2 3 29 29 H 1.09002 * 109.47305 * 59.99944 * 1 2 3 30 30 H 1.08999 * 109.47019 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46811 * 240.00290 * 2 1 3 32 32 H 1.08996 * 109.46964 * 119.99826 * 2 1 3 33 33 H 0.97000 * 119.99935 * 0.02562 * 3 2 1 34 34 H 1.08005 * 122.98508 * 180.28173 * 6 5 4 35 35 H 0.97003 * 119.99813 * 0.02562 * 10 8 7 36 36 H 1.08996 * 109.47340 * 60.00547 * 11 10 8 37 37 H 1.09003 * 109.47133 * 299.99741 * 11 10 8 38 38 H 1.08998 * 109.46122 * 58.65861 * 14 12 11 39 39 H 1.09004 * 109.44451 * 298.69553 * 14 12 11 40 40 H 1.08996 * 109.49733 * 301.41024 * 15 14 12 41 41 H 1.09005 * 109.52294 * 181.33131 * 15 14 12 42 42 H 1.09001 * 109.58625 * 185.57745 * 16 15 14 43 43 H 1.08997 * 109.70196 * 65.22177 * 16 15 14 44 44 H 0.97001 * 120.00021 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.58855 * 65.92358 * 26 17 16 46 46 H 1.08998 * 109.58990 * 186.35233 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3735 1.6331 0.0005 5 7 4.2988 0.7168 0.0003 6 6 5.5435 1.1216 -0.0055 7 6 5.6867 2.4811 0.0001 8 6 6.9518 3.2143 -0.0004 9 8 8.0072 2.6073 -0.0011 10 7 6.9496 4.5620 -0.0003 11 6 8.2172 5.2966 -0.0014 12 6 7.9351 6.8004 -0.0003 13 1 7.2866 7.0500 -0.8402 14 6 9.2533 7.5675 -0.1273 15 6 8.9695 9.0710 -0.1593 16 6 8.2923 9.4868 1.1504 17 7 7.1003 8.6519 1.3522 18 6 5.8766 9.2250 1.5748 19 1 4.9760 8.7069 1.2801 20 6 5.7939 10.4718 2.1792 21 7 6.8284 10.9563 2.8331 22 14 4.2141 11.4623 2.0646 23 1 3.3333 11.1236 3.2110 24 1 4.5352 12.9118 2.0983 25 1 3.5184 11.1389 0.7931 26 6 7.2471 7.1905 1.3167 27 16 4.0746 3.1920 0.0000 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.3879 2.1185 0.0004 34 1 6.3828 0.4419 -0.0107 35 1 6.1088 5.0456 0.0006 36 1 8.7883 5.0344 -0.8919 37 1 8.7900 5.0341 0.8881 38 1 9.7574 7.2734 -1.0478 39 1 9.8912 7.3364 0.7259 40 1 8.3114 9.2992 -0.9976 41 1 9.9065 9.6162 -0.2735 42 1 7.9989 10.5350 1.0932 43 1 8.9825 9.3454 1.9820 44 1 6.7704 11.8274 3.2557 45 1 7.8550 6.8638 2.1604 46 1 6.2639 6.7231 1.3694 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269506674.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:51 Heat of formation + Delta-G solvation = -0.619570 kcal Electronic energy + Delta-G solvation = -26462.297371 eV Core-core repulsion = 22705.832252 eV Total energy + Delta-G solvation = -3756.465119 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.15316 -40.36898 -39.25301 -37.36312 -36.24137 -34.67678 -32.49543 -32.27726 -31.86261 -30.10663 -27.28372 -26.97297 -25.77525 -24.23919 -23.79918 -22.84119 -22.11115 -20.94696 -20.49227 -20.02119 -18.66344 -17.88430 -17.71085 -16.84147 -16.69737 -16.45043 -16.32819 -16.03974 -15.77851 -15.52183 -15.31940 -15.06497 -14.87041 -14.60879 -14.50197 -14.00305 -13.74615 -13.58502 -13.22759 -12.99997 -12.87108 -12.74289 -12.64603 -12.57012 -12.45170 -12.26465 -11.97022 -11.82045 -11.57934 -11.43511 -11.26297 -11.18589 -11.07956 -10.71037 -10.51790 -10.45714 -10.11273 -8.82131 -8.65836 -7.85167 -5.31400 -0.54466 -0.07838 0.57125 1.47886 1.49764 1.51116 1.59174 2.04580 2.19933 2.23939 2.52602 3.29783 3.48773 3.59576 3.91736 3.99931 4.01443 4.07509 4.08720 4.22319 4.31708 4.42733 4.52468 4.57529 4.63399 4.76796 4.78652 4.88759 4.90860 5.02056 5.02877 5.04574 5.12000 5.22005 5.24271 5.33456 5.37953 5.46236 5.58441 5.68097 5.68321 5.80176 6.01362 6.39722 6.43120 6.82126 7.10830 7.16503 7.87633 8.40199 9.21028 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011179 B = 0.002819 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.089763 B = 9931.387975 C =12173.866849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.124 3.876 3 N -0.671 5.671 4 C 0.325 3.675 5 N -0.572 5.572 6 C 0.180 3.820 7 C -0.369 4.369 8 C 0.603 3.397 9 O -0.576 6.576 10 N -0.718 5.718 11 C 0.138 3.862 12 C -0.101 4.101 13 H 0.077 0.923 14 C -0.097 4.097 15 C -0.130 4.130 16 C 0.173 3.827 17 N -0.609 5.609 18 C -0.261 4.261 19 H 0.071 0.929 20 C -0.053 4.053 21 N -0.937 5.937 22 Si 0.966 3.034 23 H -0.285 1.285 24 H -0.296 1.296 25 H -0.267 1.267 26 C 0.152 3.848 27 S 0.165 5.835 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.428 0.572 34 H 0.191 0.809 35 H 0.404 0.596 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.051 0.949 43 H -0.008 1.008 44 H 0.249 0.751 45 H 0.007 0.993 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.490 -19.499 -9.126 23.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.001 4.001 3 N -0.310 5.310 4 C -0.045 4.045 5 N -0.298 5.298 6 C 0.020 3.980 7 C -0.496 4.496 8 C 0.391 3.609 9 O -0.458 6.458 10 N -0.368 5.368 11 C 0.014 3.986 12 C -0.121 4.121 13 H 0.095 0.905 14 C -0.135 4.135 15 C -0.169 4.169 16 C 0.047 3.953 17 N -0.332 5.332 18 C -0.391 4.391 19 H 0.088 0.912 20 C -0.248 4.248 21 N -0.583 5.583 22 Si 0.794 3.206 23 H -0.212 1.212 24 H -0.222 1.222 25 H -0.191 1.191 26 C 0.026 3.974 27 S 0.416 5.584 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.268 0.732 34 H 0.208 0.792 35 H 0.239 0.761 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.010 0.990 44 H 0.058 0.942 45 H 0.024 0.976 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.472 -19.445 -9.039 23.864 hybrid contribution -0.348 0.756 0.548 0.997 sum -10.820 -18.689 -8.491 23.204 Atomic orbital electron populations 1.21998 0.91911 1.04501 1.03309 1.21537 0.95857 0.80526 1.02225 1.44275 0.99372 1.10631 1.76726 1.24130 0.91563 0.93488 0.95294 1.66291 0.99807 1.34779 1.28934 1.22218 0.93280 0.91952 0.90568 1.25109 0.96263 0.97892 1.30326 1.16764 0.86973 0.81803 0.75393 1.90793 1.32781 1.68978 1.53249 1.45908 1.10548 1.05507 1.74845 1.21349 0.84981 0.90063 1.02232 1.21810 0.98615 0.92420 0.99287 0.90505 1.21335 0.95625 0.94362 1.02140 1.21995 0.99917 0.96496 0.98457 1.20635 0.86696 0.95458 0.92500 1.44320 1.05241 1.00629 1.83014 1.19528 0.85833 1.01810 1.31943 0.91182 1.25832 1.00287 1.01245 0.97450 1.70202 1.32343 1.18946 1.36795 0.85294 0.79573 0.77489 0.78205 1.21178 1.22206 1.19137 1.21106 0.97792 0.84395 0.94099 1.83937 0.96966 1.05444 1.72049 0.91298 0.91127 0.89257 0.91671 0.91890 0.73184 0.79182 0.76061 0.90452 0.92122 0.90002 0.92561 0.92773 0.91180 0.93008 0.98960 0.94224 0.97555 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.70 10.03 71.98 0.72 0.02 16 2 C 0.12 1.24 6.64 86.38 0.57 1.81 16 3 N -0.67 -8.25 5.68 -351.33 -2.00 -10.25 16 4 C 0.32 6.16 8.05 179.43 1.44 7.60 16 5 N -0.57 -13.09 10.06 -200.63 -2.02 -15.11 16 6 C 0.18 4.38 11.14 84.47 0.94 5.32 16 7 C -0.37 -9.44 6.50 23.99 0.16 -9.29 16 8 C 0.60 18.15 7.77 86.32 0.67 18.82 16 9 O -0.58 -20.72 16.87 -4.51 -0.08 -20.80 16 10 N -0.72 -20.01 5.33 -467.50 -2.49 -22.51 16 11 C 0.14 3.92 5.07 86.38 0.44 4.36 16 12 C -0.10 -3.18 2.39 -10.57 -0.03 -3.21 16 13 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 14 C -0.10 -2.96 5.16 30.62 0.16 -2.80 16 15 C -0.13 -4.69 6.08 30.67 0.19 -4.50 16 16 C 0.17 8.28 5.30 86.36 0.46 8.74 16 17 N -0.61 -30.00 2.99 -698.28 -2.09 -32.09 16 18 C -0.26 -14.01 9.58 84.03 0.81 -13.20 16 19 H 0.07 3.59 7.89 -2.91 -0.02 3.57 16 20 C -0.05 -2.92 4.92 84.86 0.42 -2.50 16 21 N -0.94 -55.35 11.20 21.65 0.24 -55.11 16 22 Si 0.97 43.94 29.59 68.60 2.03 45.97 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 24 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 26 C 0.15 6.10 5.63 86.51 0.49 6.58 16 27 S 0.17 3.25 22.33 -56.49 -1.26 1.99 16 28 H 0.07 0.27 8.14 -2.38 -0.02 0.25 16 29 H 0.07 0.24 8.14 -2.39 -0.02 0.23 16 30 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.43 3.17 8.59 -92.71 -0.80 2.38 16 34 H 0.19 4.27 8.06 -2.91 -0.02 4.25 16 35 H 0.40 10.43 6.89 -92.71 -0.64 9.79 16 36 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.05 1.96 8.14 -2.39 -0.02 1.95 16 41 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 42 H 0.05 2.82 6.06 -2.39 -0.01 2.81 16 43 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 44 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 45 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 46 H 0.05 2.06 7.16 -2.39 -0.02 2.04 16 Total: -1.00 -70.61 386.55 -0.66 -71.27 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -0.44 Total: 18.88 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: 7.43 Total: 17.75 kcal Atomic # 7 Polarization: -126.71 SS G_CDS: -8.35 Total: -135.06 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.08 Total: -20.80 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -1.26 Total: 1.99 kcal Total: -70.61 -0.66 -71.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269506674.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.646 kcal (2) G-P(sol) polarization free energy of solvation -70.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds