Wall clock time and date at job start Tue Mar 31 2020 20:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47151 * 2 1 4 4 C 1.52999 * 109.47357 * 239.99913 * 2 1 3 5 5 C 1.50696 * 109.47589 * 174.99507 * 4 2 1 6 6 H 1.08000 * 119.99829 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00503 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99684 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00361 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47358 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47298 * 119.99945 * 9 7 5 12 12 H 1.48505 * 109.47412 * 239.99985 * 9 7 5 13 13 N 1.46897 * 109.47332 * 119.99764 * 2 1 3 14 14 C 1.46899 * 111.00406 * 295.00264 * 13 2 1 15 15 C 1.53236 * 109.34238 * 187.25665 * 14 13 2 16 16 N 1.47082 * 108.51777 * 306.16718 * 15 14 13 17 17 C 1.34784 * 120.87969 * 231.18993 * 16 15 14 18 18 O 1.21588 * 119.99884 * 0.02562 * 17 16 15 19 19 C 1.47543 * 119.99766 * 179.97438 * 17 16 15 20 20 C 1.39901 * 120.18600 * 89.72558 * 19 17 16 21 21 F 1.35103 * 120.09890 * 359.97438 * 20 19 17 22 22 C 1.38221 * 119.80479 * 179.74210 * 20 19 17 23 23 C 1.38300 * 120.18933 * 0.50841 * 22 20 19 24 24 C 1.38297 * 120.38651 * 359.76973 * 23 22 20 25 25 C 1.38227 * 120.18890 * 359.97156 * 24 23 22 26 26 F 1.35094 * 120.09566 * 179.97438 * 25 24 23 27 27 C 1.47077 * 118.24009 * 51.45917 * 16 15 14 28 28 C 1.46901 * 111.00064 * 59.30352 * 13 2 1 29 29 H 1.09001 * 109.47151 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46820 * 300.00000 * 1 2 3 31 31 H 1.08997 * 109.47616 * 59.99792 * 1 2 3 32 32 H 1.08993 * 109.47312 * 295.00438 * 4 2 1 33 33 H 1.09002 * 109.46805 * 54.99702 * 4 2 1 34 34 H 0.96999 * 119.99964 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.49144 * 67.28658 * 14 13 2 36 36 H 1.09002 * 109.50922 * 307.22536 * 14 13 2 37 37 H 1.09002 * 109.62922 * 186.46386 * 15 14 13 38 38 H 1.08992 * 109.63368 * 65.87381 * 15 14 13 39 39 H 1.08005 * 119.90503 * 180.23580 * 22 20 19 40 40 H 1.08005 * 119.80805 * 179.74078 * 23 22 20 41 41 H 1.07996 * 119.91052 * 179.97438 * 24 23 22 42 42 H 1.09000 * 109.62570 * 68.25311 * 27 16 15 43 43 H 1.09001 * 109.63406 * 188.83114 * 27 16 15 44 44 H 1.09003 * 109.49313 * 292.70979 * 28 13 2 45 45 H 1.08999 * 109.49135 * 52.78641 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5418 -0.6148 -1.3128 6 1 4.0789 -0.0860 -0.5393 7 6 4.2303 -1.1925 -2.3583 8 7 3.5762 -1.8360 -3.3005 9 14 6.0920 -1.0612 -2.4368 10 1 6.5837 -0.2917 -1.2658 11 1 6.6854 -2.4224 -2.4198 12 1 6.4869 -0.3647 -3.6874 13 7 2.0196 -0.6924 1.1994 14 6 1.6487 0.0392 2.4181 15 6 2.3278 -0.6121 3.6275 16 7 1.9934 -2.0443 3.6359 17 6 1.5019 -2.6335 4.7441 18 8 1.3290 -1.9795 5.7545 19 6 1.1725 -4.0716 4.7307 20 6 2.1417 -5.0185 5.0789 21 9 3.3841 -4.6193 5.4285 22 6 1.8230 -6.3634 5.0688 23 6 0.5534 -6.7746 4.7057 24 6 -0.4090 -5.8457 4.3545 25 6 -0.1091 -4.4964 4.3642 26 9 -1.0505 -3.5906 4.0203 27 6 2.2152 -2.8180 2.4049 28 6 1.5351 -2.0786 1.2418 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.7516 -1.7714 -1.2056 33 1 1.6053 -0.2618 -2.1369 34 1 4.0605 -2.2422 -4.0363 35 1 0.5669 0.0064 2.5469 36 1 1.9736 1.0762 2.3332 37 1 1.9671 -0.1465 4.5447 38 1 3.4081 -0.4888 3.5513 39 1 2.5689 -7.0956 5.3410 40 1 0.3123 -7.8274 4.6959 41 1 -1.3979 -6.1753 4.0718 42 1 3.2850 -2.9027 2.2135 43 1 1.7801 -3.8115 2.5133 44 1 0.4548 -2.0820 1.3870 45 1 1.7779 -2.5776 0.3037 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276350416.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:02 Heat of formation + Delta-G solvation = -82.561546 kcal Electronic energy + Delta-G solvation = -30506.890621 eV Core-core repulsion = 26160.739093 eV Total energy + Delta-G solvation = -4346.151528 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.34151 -49.32494 -40.38907 -38.89840 -38.03483 -35.33908 -32.87007 -32.05121 -30.77942 -30.73684 -30.52504 -27.41355 -26.53755 -24.47377 -23.52086 -23.23245 -23.09562 -21.49256 -19.84241 -18.89458 -18.35893 -17.65571 -17.38751 -16.68967 -16.19796 -16.03095 -15.99087 -15.61192 -15.45165 -15.18677 -14.92998 -14.73516 -14.66411 -14.23008 -14.03096 -13.92597 -13.16308 -13.09030 -12.92541 -12.43328 -12.31402 -12.25413 -12.10796 -12.04284 -11.86534 -11.73274 -11.37365 -11.23505 -10.87622 -10.62417 -10.57602 -10.40434 -10.08693 -9.99319 -9.40120 -9.24878 -9.18968 -9.02359 -8.67231 -8.30977 -7.58747 -5.94048 -3.92221 0.38583 0.54808 2.33382 2.76603 2.97993 3.34761 3.39340 3.42959 3.48381 3.96441 4.05862 4.31728 4.38230 4.43105 4.52716 4.66924 5.04883 5.18651 5.22087 5.32966 5.35209 5.42861 5.44947 5.48424 5.54421 5.59379 5.63001 5.69589 5.75422 5.86972 5.90776 5.97733 6.06408 6.23397 6.24811 6.28931 6.42286 6.53180 6.66522 6.89434 7.26450 7.46327 7.58104 7.80092 7.91920 7.96368 8.07009 8.51760 9.14495 9.70298 11.17751 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012551 B = 0.003591 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.341081 B = 7795.881166 C = 8338.874101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.087 3.913 3 H 0.073 0.927 4 C 0.028 3.972 5 C -0.491 4.491 6 H 0.062 0.938 7 C 0.052 3.948 8 N -0.903 5.903 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.509 5.509 14 C 0.039 3.961 15 C 0.118 3.882 16 N -0.593 5.593 17 C 0.565 3.435 18 O -0.531 6.531 19 C -0.191 4.191 20 C 0.162 3.838 21 F -0.120 7.120 22 C -0.164 4.164 23 C -0.047 4.047 24 C -0.164 4.164 25 C 0.161 3.839 26 F -0.120 7.120 27 C 0.111 3.889 28 C 0.042 3.958 29 H 0.050 0.950 30 H 0.040 0.960 31 H 0.057 0.943 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.257 0.743 35 H 0.032 0.968 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.030 0.970 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.624 -9.596 15.703 19.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.020 4.020 3 H 0.091 0.909 4 C -0.009 4.009 5 C -0.530 4.530 6 H 0.080 0.920 7 C -0.148 4.148 8 N -0.544 5.544 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.214 1.214 13 N -0.233 5.233 14 C -0.091 4.091 15 C -0.004 4.004 16 N -0.325 5.325 17 C 0.351 3.649 18 O -0.408 6.408 19 C -0.196 4.196 20 C 0.141 3.859 21 F -0.098 7.098 22 C -0.183 4.183 23 C -0.065 4.065 24 C -0.183 4.183 25 C 0.141 3.859 26 F -0.098 7.098 27 C -0.012 4.012 28 C -0.086 4.086 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.168 0.832 40 H 0.167 0.833 41 H 0.167 0.833 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.048 0.952 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.141 -9.262 16.045 19.855 hybrid contribution 0.203 0.221 -0.231 0.379 sum -6.938 -9.041 15.814 19.493 Atomic orbital electron populations 1.22521 0.99668 1.01280 1.00819 1.21940 0.90092 0.98550 0.91465 0.90904 1.19245 0.96495 0.95253 0.89869 1.21207 0.91684 1.33047 1.07054 0.92006 1.24996 0.98006 0.95838 0.95940 1.69971 1.35161 1.36969 1.12296 0.86593 0.86412 0.77579 0.77732 1.19757 1.21326 1.21402 1.62065 1.59124 1.00990 1.01109 1.22471 0.97548 0.98460 0.90575 1.21823 1.00821 0.78845 0.98939 1.48199 1.61894 1.10829 1.11583 1.17764 0.77770 0.85765 0.83616 1.90796 1.53703 1.64307 1.32043 1.19938 0.94507 0.95206 1.09945 1.17319 0.79404 0.91786 0.97344 1.91588 1.38002 1.91453 1.88772 1.21192 0.98993 0.93596 1.04528 1.20995 0.91170 1.00352 0.94015 1.21194 1.02250 0.90342 1.04528 1.17324 0.84548 0.86924 0.97088 1.91587 1.62706 1.66613 1.88934 1.22096 1.02379 0.93948 0.82746 1.22561 0.96006 0.91001 0.99058 0.93050 0.94074 0.92416 0.96229 0.96214 0.93342 0.94949 0.89725 0.89116 0.90183 0.83246 0.83309 0.83257 0.89548 0.90616 0.95159 0.87517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.09 8.51 37.15 0.32 -2.77 16 2 C 0.09 1.69 2.29 -67.72 -0.16 1.53 16 3 H 0.07 1.44 8.07 -51.93 -0.42 1.02 16 4 C 0.03 0.68 4.27 -27.89 -0.12 0.56 16 5 C -0.49 -13.17 8.84 -34.44 -0.30 -13.48 16 6 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.90 -26.32 13.29 55.43 0.74 -25.59 16 9 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 N -0.51 -9.15 4.33 -226.05 -0.98 -10.13 16 14 C 0.04 0.59 5.14 -3.70 -0.02 0.57 16 15 C 0.12 1.76 6.60 -3.60 -0.02 1.74 16 16 N -0.59 -9.18 3.00 -173.41 -0.52 -9.70 16 17 C 0.57 9.12 6.43 -12.46 -0.08 9.04 16 18 O -0.53 -10.07 16.56 5.29 0.09 -9.98 16 19 C -0.19 -2.53 3.69 -104.86 -0.39 -2.91 16 20 C 0.16 1.86 7.29 -38.97 -0.28 1.57 16 21 F -0.12 -1.56 16.83 2.25 0.04 -1.53 16 22 C -0.16 -1.28 10.01 -39.56 -0.40 -1.67 16 23 C -0.05 -0.29 10.03 -39.54 -0.40 -0.69 16 24 C -0.16 -1.30 10.01 -39.56 -0.40 -1.69 16 25 C 0.16 1.87 7.13 -38.96 -0.28 1.60 16 26 F -0.12 -1.61 16.83 2.25 0.04 -1.57 16 27 C 0.11 1.66 6.53 -3.37 -0.02 1.64 16 28 C 0.04 0.72 4.78 -3.46 -0.02 0.70 16 29 H 0.05 0.86 6.56 -51.93 -0.34 0.52 16 30 H 0.04 0.63 6.69 -51.93 -0.35 0.28 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.02 0.49 6.02 -51.93 -0.31 0.18 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.03 0.51 6.81 -51.93 -0.35 0.15 16 36 H 0.08 1.21 8.05 -51.93 -0.42 0.80 16 37 H 0.09 1.34 7.06 -51.93 -0.37 0.97 16 38 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.15 0.79 8.06 -52.48 -0.42 0.37 16 40 H 0.15 0.41 8.06 -52.48 -0.42 -0.01 16 41 H 0.15 0.82 8.06 -52.49 -0.42 0.39 16 42 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 43 H 0.08 1.00 6.28 -51.93 -0.33 0.67 16 44 H 0.03 0.50 6.71 -51.93 -0.35 0.15 16 45 H 0.11 2.03 5.87 -51.93 -0.31 1.73 16 LS Contribution 369.61 15.07 5.57 5.57 Total: -1.00 -32.23 369.61 -8.75 -40.98 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -6.04 Total: -1.57 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -2.66 Total: -2.92 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: -0.76 Total: -45.42 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.08 Total: -3.09 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.23 -8.75 -40.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276350416.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.586 kcal (2) G-P(sol) polarization free energy of solvation -32.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds