Wall clock time and date at job start Tue Mar 31 2020 20:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47151 * 2 1 4 4 C 1.52999 * 109.47357 * 239.99913 * 2 1 3 5 5 C 1.50696 * 109.47589 * 174.99507 * 4 2 1 6 6 H 1.08000 * 119.99829 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00503 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99684 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00361 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47358 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47298 * 119.99945 * 9 7 5 12 12 H 1.48505 * 109.47412 * 239.99985 * 9 7 5 13 13 N 1.46897 * 109.47332 * 119.99764 * 2 1 3 14 14 C 1.46899 * 111.00406 * 295.00264 * 13 2 1 15 15 C 1.53236 * 109.34238 * 187.25665 * 14 13 2 16 16 N 1.47082 * 108.51777 * 306.16718 * 15 14 13 17 17 C 1.34784 * 120.87969 * 231.18993 * 16 15 14 18 18 O 1.21588 * 119.99884 * 0.02562 * 17 16 15 19 19 C 1.47543 * 119.99766 * 179.97438 * 17 16 15 20 20 C 1.39901 * 120.18600 * 89.72558 * 19 17 16 21 21 F 1.35103 * 120.09890 * 359.97438 * 20 19 17 22 22 C 1.38221 * 119.80479 * 179.74210 * 20 19 17 23 23 C 1.38300 * 120.18933 * 0.50841 * 22 20 19 24 24 C 1.38297 * 120.38651 * 359.76973 * 23 22 20 25 25 C 1.38227 * 120.18890 * 359.97156 * 24 23 22 26 26 F 1.35094 * 120.09566 * 179.97438 * 25 24 23 27 27 C 1.47077 * 118.24009 * 51.45917 * 16 15 14 28 28 C 1.46901 * 111.00064 * 59.30352 * 13 2 1 29 29 H 1.09001 * 109.47151 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46820 * 300.00000 * 1 2 3 31 31 H 1.08997 * 109.47616 * 59.99792 * 1 2 3 32 32 H 1.08993 * 109.47312 * 295.00438 * 4 2 1 33 33 H 1.09002 * 109.46805 * 54.99702 * 4 2 1 34 34 H 0.96999 * 119.99964 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.49144 * 67.28658 * 14 13 2 36 36 H 1.09002 * 109.50922 * 307.22536 * 14 13 2 37 37 H 1.09002 * 109.62922 * 186.46386 * 15 14 13 38 38 H 1.08992 * 109.63368 * 65.87381 * 15 14 13 39 39 H 1.08005 * 119.90503 * 180.23580 * 22 20 19 40 40 H 1.08005 * 119.80805 * 179.74078 * 23 22 20 41 41 H 1.07996 * 119.91052 * 179.97438 * 24 23 22 42 42 H 1.09000 * 109.62570 * 68.25311 * 27 16 15 43 43 H 1.09001 * 109.63406 * 188.83114 * 27 16 15 44 44 H 1.09003 * 109.49313 * 292.70979 * 28 13 2 45 45 H 1.08999 * 109.49135 * 52.78641 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5418 -0.6148 -1.3128 6 1 4.0789 -0.0860 -0.5393 7 6 4.2303 -1.1925 -2.3583 8 7 3.5762 -1.8360 -3.3005 9 14 6.0920 -1.0612 -2.4368 10 1 6.5837 -0.2917 -1.2658 11 1 6.6854 -2.4224 -2.4198 12 1 6.4869 -0.3647 -3.6874 13 7 2.0196 -0.6924 1.1994 14 6 1.6487 0.0392 2.4181 15 6 2.3278 -0.6121 3.6275 16 7 1.9934 -2.0443 3.6359 17 6 1.5019 -2.6335 4.7441 18 8 1.3290 -1.9795 5.7545 19 6 1.1725 -4.0716 4.7307 20 6 2.1417 -5.0185 5.0789 21 9 3.3841 -4.6193 5.4285 22 6 1.8230 -6.3634 5.0688 23 6 0.5534 -6.7746 4.7057 24 6 -0.4090 -5.8457 4.3545 25 6 -0.1091 -4.4964 4.3642 26 9 -1.0505 -3.5906 4.0203 27 6 2.2152 -2.8180 2.4049 28 6 1.5351 -2.0786 1.2418 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.7516 -1.7714 -1.2056 33 1 1.6053 -0.2618 -2.1369 34 1 4.0605 -2.2422 -4.0363 35 1 0.5669 0.0064 2.5469 36 1 1.9736 1.0762 2.3332 37 1 1.9671 -0.1465 4.5447 38 1 3.4081 -0.4888 3.5513 39 1 2.5689 -7.0956 5.3410 40 1 0.3123 -7.8274 4.6959 41 1 -1.3979 -6.1753 4.0718 42 1 3.2850 -2.9027 2.2135 43 1 1.7801 -3.8115 2.5133 44 1 0.4548 -2.0820 1.3870 45 1 1.7779 -2.5776 0.3037 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276350416.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:01 Heat of formation + Delta-G solvation = -102.153426 kcal Electronic energy + Delta-G solvation = -30507.740189 eV Core-core repulsion = 26160.739093 eV Total energy + Delta-G solvation = -4347.001095 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.22970 -50.20716 -41.58170 -39.93983 -39.18413 -36.77790 -34.78353 -33.20901 -32.00342 -31.86303 -31.46596 -29.24922 -27.81250 -25.61616 -24.89238 -24.73400 -23.96642 -22.74932 -21.20728 -20.12619 -19.26732 -18.61158 -18.45285 -18.30598 -17.78237 -17.06003 -16.81439 -16.60613 -16.53653 -16.50398 -16.21520 -16.17142 -15.75597 -15.54966 -15.41443 -15.07221 -14.67693 -14.31471 -13.89186 -13.83324 -13.68560 -13.37457 -13.28234 -13.09629 -13.04519 -12.93759 -12.92909 -12.72136 -12.56878 -12.37448 -12.12275 -12.01024 -11.74927 -11.29694 -11.07034 -11.01917 -10.45343 -10.18982 -9.98308 -9.90796 -9.01862 -8.07910 -6.11954 -0.35941 -0.14872 1.13659 1.42482 1.45099 1.56866 1.69625 2.24095 2.49316 2.61382 2.96863 3.05969 3.24379 3.28433 3.69484 3.70937 3.80571 3.91955 4.06631 4.10923 4.15078 4.22431 4.29174 4.39004 4.49860 4.53247 4.58636 4.60597 4.64268 4.74449 4.83426 4.87807 4.95638 4.96630 5.01220 5.10383 5.13909 5.22923 5.26852 5.50857 5.61550 5.70289 5.91999 6.05319 6.27432 6.31659 6.48444 6.73698 7.01984 7.54200 9.04098 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012551 B = 0.003591 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.341081 B = 7795.881166 C = 8338.874101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.096 3.904 3 H 0.070 0.930 4 C 0.036 3.964 5 C -0.497 4.497 6 H 0.058 0.942 7 C 0.001 3.999 8 N -0.938 5.938 9 Si 0.951 3.049 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.285 1.285 13 N -0.524 5.524 14 C 0.046 3.954 15 C 0.118 3.882 16 N -0.595 5.595 17 C 0.563 3.437 18 O -0.570 6.570 19 C -0.220 4.220 20 C 0.137 3.863 21 F -0.138 7.138 22 C -0.150 4.150 23 C -0.026 4.026 24 C -0.151 4.151 25 C 0.136 3.864 26 F -0.139 7.139 27 C 0.121 3.879 28 C 0.050 3.950 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.004 0.996 33 H -0.007 1.007 34 H 0.258 0.742 35 H 0.034 0.966 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.180 0.820 40 H 0.198 0.802 41 H 0.179 0.821 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.034 0.966 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.841 -11.663 16.727 21.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.012 4.012 3 H 0.088 0.912 4 C -0.001 4.001 5 C -0.535 4.535 6 H 0.076 0.924 7 C -0.196 4.196 8 N -0.580 5.580 9 Si 0.778 3.222 10 H -0.192 1.192 11 H -0.209 1.209 12 H -0.211 1.211 13 N -0.248 5.248 14 C -0.082 4.082 15 C -0.004 4.004 16 N -0.326 5.326 17 C 0.350 3.650 18 O -0.450 6.450 19 C -0.225 4.225 20 C 0.117 3.883 21 F -0.116 7.116 22 C -0.168 4.168 23 C -0.043 4.043 24 C -0.169 4.169 25 C 0.116 3.884 26 F -0.117 7.117 27 C -0.002 4.002 28 C -0.079 4.079 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.022 0.978 33 H 0.011 0.989 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.197 0.803 40 H 0.215 0.785 41 H 0.196 0.804 42 H 0.097 0.903 43 H 0.113 0.887 44 H 0.052 0.948 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.355 -11.328 17.069 21.766 hybrid contribution 0.235 0.789 -0.532 0.980 sum -7.120 -10.538 16.537 20.862 Atomic orbital electron populations 1.22383 0.97487 1.01465 1.01890 1.21653 0.91768 0.97609 0.90188 0.91176 1.19087 0.95234 0.94613 0.91207 1.21492 0.93119 1.32279 1.06624 0.92375 1.25750 1.02329 0.95721 0.95767 1.70085 1.36843 1.38086 1.12989 0.85605 0.81269 0.77609 0.77751 1.19161 1.20920 1.21142 1.61978 1.59766 1.01584 1.01518 1.22455 0.97629 0.98822 0.89310 1.21817 1.00848 0.78969 0.98771 1.48277 1.61611 1.10996 1.11678 1.18282 0.76679 0.87126 0.82891 1.90752 1.55296 1.65705 1.33241 1.19863 0.96083 0.93571 1.12973 1.17687 0.78658 0.93082 0.98838 1.91540 1.39017 1.91832 1.89203 1.21633 1.00409 0.92187 1.02594 1.21595 0.89581 1.02266 0.90876 1.21629 1.03968 0.88643 1.02683 1.17693 0.83797 0.88188 0.98713 1.91534 1.63203 1.67588 1.89382 1.21987 1.01760 0.94573 0.81842 1.22425 0.96356 0.90492 0.98579 0.93302 0.92116 0.92170 0.97799 0.98875 0.93308 0.94809 0.88421 0.88958 0.90093 0.80284 0.78474 0.80406 0.90323 0.88718 0.94759 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.72 8.51 71.98 0.61 -5.11 16 2 C 0.10 3.73 2.29 44.91 0.10 3.83 16 3 H 0.07 2.76 8.07 -2.39 -0.02 2.74 16 4 C 0.04 1.76 4.27 29.85 0.13 1.89 16 5 C -0.50 -27.01 8.84 25.60 0.23 -26.78 16 6 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 7 C 0.00 0.03 5.46 84.65 0.46 0.49 16 8 N -0.94 -55.57 13.29 21.45 0.28 -55.29 16 9 Si 0.95 44.30 29.54 68.60 2.03 46.32 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 13 N -0.52 -18.88 4.33 -869.10 -3.76 -22.65 16 14 C 0.05 1.40 5.14 86.38 0.44 1.85 16 15 C 0.12 3.55 6.60 86.35 0.57 4.12 16 16 N -0.59 -18.65 3.00 -820.80 -2.46 -21.12 16 17 C 0.56 18.56 6.43 86.70 0.56 19.12 16 18 O -0.57 -22.36 16.56 -3.99 -0.07 -22.42 16 19 C -0.22 -5.77 3.69 -20.02 -0.07 -5.84 16 20 C 0.14 3.00 7.29 22.67 0.17 3.17 16 21 F -0.14 -3.58 16.83 44.97 0.76 -2.83 16 22 C -0.15 -1.80 10.01 22.28 0.22 -1.58 16 23 C -0.03 -0.19 10.03 22.30 0.22 0.03 16 24 C -0.15 -1.86 10.01 22.28 0.22 -1.63 16 25 C 0.14 3.01 7.13 22.67 0.16 3.17 16 26 F -0.14 -3.69 16.83 44.97 0.76 -2.93 16 27 C 0.12 3.65 6.53 86.50 0.56 4.22 16 28 C 0.05 1.71 4.78 86.54 0.41 2.13 16 29 H 0.05 1.62 6.56 -2.39 -0.02 1.61 16 30 H 0.06 1.77 6.69 -2.38 -0.02 1.75 16 31 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.00 0.20 6.02 -2.39 -0.01 0.19 16 33 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 34 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 35 H 0.03 1.03 6.81 -2.39 -0.02 1.01 16 36 H 0.10 2.70 8.05 -2.39 -0.02 2.68 16 37 H 0.09 2.77 7.06 -2.39 -0.02 2.75 16 38 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.18 1.08 8.06 -2.91 -0.02 1.06 16 40 H 0.20 -0.32 8.06 -2.91 -0.02 -0.35 16 41 H 0.18 1.16 8.06 -2.91 -0.02 1.13 16 42 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 43 H 0.09 2.49 6.28 -2.39 -0.01 2.48 16 44 H 0.03 1.14 6.71 -2.39 -0.02 1.12 16 45 H 0.08 3.23 5.87 -2.39 -0.01 3.21 16 Total: -1.00 -72.74 369.61 3.55 -69.19 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 1.02 Total: 8.63 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 5.00 Total: 3.08 kcal Atomic # 7 Polarization: -93.11 SS G_CDS: -5.94 Total: -99.05 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.07 Total: -22.42 kcal Atomic # 9 Polarization: -7.27 SS G_CDS: 1.51 Total: -5.76 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -72.74 3.55 -69.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276350416.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.962 kcal (2) G-P(sol) polarization free energy of solvation -72.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds