Wall clock time and date at job start Tue Mar 31 2020 21:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50692 * 120.00322 * 2 1 4 4 C 1.50704 * 119.99541 * 179.97438 * 2 1 3 5 5 N 1.46495 * 109.47101 * 95.00110 * 4 2 1 6 6 C 1.46497 * 120.00106 * 269.99853 * 5 4 2 7 7 C 1.53002 * 109.47029 * 275.85063 * 6 5 4 8 8 C 1.34785 * 120.00249 * 89.99709 * 5 4 2 9 9 O 1.21277 * 119.99674 * 5.07825 * 8 5 4 10 10 C 1.50697 * 120.00014 * 185.07857 * 8 5 4 11 11 H 1.08998 * 109.47542 * 38.36624 * 10 8 5 12 12 C 1.52999 * 109.47239 * 278.36684 * 10 8 5 13 13 S 1.81002 * 109.46942 * 158.36585 * 10 8 5 14 14 C 1.76201 * 99.99898 * 184.99775 * 13 10 8 15 15 N 1.32389 * 126.25852 * 0.02562 * 14 13 10 16 16 N 1.28519 * 110.20234 * 179.97438 * 15 14 13 17 17 C 1.33096 * 109.74492 * 359.97438 * 16 15 14 18 18 C 1.39776 * 126.55982 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99937 * 179.97438 * 18 17 16 20 20 C 1.40082 * 120.00652 * 359.97438 * 18 17 16 21 21 N 1.30820 * 119.99238 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00447 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47125 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47191 * 119.99470 * 22 20 18 25 25 H 1.48499 * 109.46830 * 239.99520 * 22 20 18 26 26 N 1.36669 * 126.26177 * 179.97438 * 14 13 10 27 27 C 1.46510 * 127.14858 * 0.26507 * 26 14 13 28 28 H 1.08008 * 119.99722 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.00341 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47602 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47295 * 300.00134 * 3 2 1 32 32 H 1.09000 * 109.47534 * 59.99898 * 3 2 1 33 33 H 1.08996 * 109.47337 * 334.99818 * 4 2 1 34 34 H 1.09007 * 109.46984 * 215.00055 * 4 2 1 35 35 H 1.09003 * 109.47182 * 35.85081 * 6 5 4 36 36 H 1.09001 * 109.47320 * 155.84989 * 6 5 4 37 37 H 1.09002 * 109.47155 * 66.66685 * 7 6 5 38 38 H 1.08996 * 109.47254 * 186.66746 * 7 6 5 39 39 H 1.08997 * 109.47420 * 306.67090 * 7 6 5 40 40 H 1.09002 * 109.46608 * 306.95431 * 12 10 8 41 41 H 1.09000 * 109.47074 * 66.94775 * 12 10 8 42 42 H 1.08998 * 109.47277 * 186.95160 * 12 10 8 43 43 H 0.97003 * 119.99485 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.46692 * 269.68288 * 27 26 14 45 45 H 1.09008 * 109.46816 * 29.68294 * 27 26 14 46 46 H 1.09000 * 109.47151 * 149.67858 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0634 -1.3052 0.0006 5 7 2.4118 -1.6685 -1.3752 6 6 1.4914 -2.4821 -2.1734 7 6 1.7176 -3.9627 -1.8610 8 6 3.5791 -1.2543 -1.9066 9 8 4.3816 -0.6599 -1.2185 10 6 3.8870 -1.5297 -3.3559 11 1 2.9799 -1.4130 -3.9487 12 6 4.4120 -2.9593 -3.5030 13 16 5.1425 -0.3631 -3.9381 14 6 5.1967 -0.7984 -5.6447 15 7 4.4743 -1.7368 -6.2366 16 7 4.7605 -1.7936 -7.4883 17 6 5.6911 -0.8873 -7.7783 18 6 6.2567 -0.6472 -9.0338 19 1 7.0084 0.1196 -9.1497 20 6 5.8486 -1.4009 -10.1418 21 7 4.9384 -2.3300 -10.0013 22 14 6.6050 -1.0805 -11.8194 23 1 7.6034 0.0135 -11.7114 24 1 7.2730 -2.3146 -12.3051 25 1 5.5396 -0.6852 -12.7753 26 7 5.9913 -0.2286 -6.5994 27 6 6.9631 0.8517 -6.4123 28 1 -0.5400 0.9354 0.0004 29 1 -0.5401 -0.9353 0.0004 30 1 3.1352 1.1058 -0.0005 31 1 1.8002 1.8766 -0.8899 32 1 1.8002 1.8766 0.8900 33 1 1.4385 -2.0853 0.4352 34 1 2.9741 -1.1987 0.5900 35 1 0.4637 -2.2123 -1.9302 36 1 1.6732 -2.3024 -3.2330 37 1 1.4226 -4.1661 -0.8316 38 1 1.1189 -4.5724 -2.5377 39 1 2.7724 -4.2046 -1.9911 40 1 5.2450 -3.1127 -2.8170 41 1 3.6146 -3.6649 -3.2698 42 1 4.7502 -3.1186 -4.5268 43 1 4.6560 -2.8522 -10.7684 44 1 6.4726 1.8126 -6.5676 45 1 7.3644 0.8080 -5.3997 46 1 7.7754 0.7381 -7.1302 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279864931.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:09 Heat of formation + Delta-G solvation = 57.023641 kcal Electronic energy + Delta-G solvation = -27358.410717 eV Core-core repulsion = 23604.445195 eV Total energy + Delta-G solvation = -3753.965522 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.51789 -40.21041 -36.74486 -35.19226 -33.73285 -33.37024 -32.58513 -30.64964 -29.28184 -27.55940 -26.87726 -26.46551 -25.50760 -23.98419 -23.43373 -20.87304 -20.64363 -19.58012 -18.35390 -17.45717 -17.23995 -16.88429 -15.92563 -15.54601 -15.36604 -14.78194 -14.56177 -14.50825 -14.27259 -14.10617 -13.87398 -13.58355 -13.25589 -13.18848 -12.88590 -12.45299 -12.32982 -12.27997 -12.17550 -11.89617 -11.76953 -11.70400 -11.56011 -11.38638 -11.35284 -11.29457 -11.14982 -10.93908 -10.36387 -9.95446 -9.80981 -9.68375 -9.61486 -9.27345 -8.82064 -8.69959 -8.41613 -8.38251 -6.81033 -6.66366 -4.57636 1.70117 2.00045 2.60665 2.80317 2.89677 3.05938 3.10288 3.14447 3.34928 3.86593 4.23807 4.36827 4.40789 4.64600 4.72155 4.75453 5.03232 5.12430 5.21322 5.26057 5.31432 5.37055 5.43061 5.52988 5.53709 5.57536 5.63370 5.69678 5.73989 5.79777 5.90527 5.95536 6.06579 6.08275 6.12974 6.35403 6.38721 6.59265 6.64687 6.77414 6.90728 7.20897 7.23989 7.48754 7.88395 8.09416 8.17631 8.69497 8.85371 10.26221 10.62179 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020179 B = 0.002775 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.250457 B =10088.495771 C =10682.063990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.136 4.136 3 C -0.123 4.123 4 C 0.149 3.851 5 N -0.604 5.604 6 C 0.097 3.903 7 C -0.177 4.177 8 C 0.542 3.458 9 O -0.524 6.524 10 C -0.093 4.093 11 H 0.116 0.884 12 C -0.148 4.148 13 S 0.009 5.991 14 C 0.037 3.963 15 N -0.286 5.286 16 N -0.333 5.333 17 C 0.347 3.653 18 C -0.447 4.447 19 H 0.084 0.916 20 C 0.078 3.922 21 N -0.737 5.737 22 Si 0.920 3.080 23 H -0.262 1.262 24 H -0.272 1.272 25 H -0.272 1.272 26 N -0.513 5.513 27 C 0.100 3.900 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.097 0.903 43 H 0.278 0.722 44 H 0.056 0.944 45 H 0.067 0.933 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.257 1.322 15.317 16.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.137 4.137 3 C -0.180 4.180 4 C 0.027 3.973 5 N -0.337 5.337 6 C -0.025 4.025 7 C -0.235 4.235 8 C 0.329 3.671 9 O -0.399 6.399 10 C -0.226 4.226 11 H 0.134 0.866 12 C -0.206 4.206 13 S 0.236 5.764 14 C -0.335 4.335 15 N -0.133 5.133 16 N -0.181 5.181 17 C 0.102 3.898 18 C -0.487 4.487 19 H 0.102 0.898 20 C -0.147 4.147 21 N -0.361 5.361 22 Si 0.744 3.256 23 H -0.185 1.185 24 H -0.197 1.197 25 H -0.198 1.198 26 N -0.215 5.215 27 C -0.045 4.045 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.116 0.884 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.358 1.159 16.039 17.292 hybrid contribution 0.402 0.297 -1.510 1.591 sum -5.956 1.457 14.529 15.770 Atomic orbital electron populations 1.23699 0.95152 1.01841 1.01717 1.22174 0.95530 0.96488 0.99501 1.20888 1.01398 0.94186 1.01526 1.20482 1.00203 0.93454 0.83180 1.47869 1.19079 1.52793 1.14007 1.21722 0.93573 0.90526 0.96727 1.22369 1.03346 0.95799 1.01989 1.19972 0.80947 0.77890 0.88336 1.90681 1.46628 1.40807 1.61805 1.23218 1.02903 1.01004 0.95471 0.86594 1.22211 1.01219 0.91438 1.05777 1.84956 1.51473 1.45730 0.94285 1.25579 1.05546 1.06235 0.96150 1.74446 1.20287 1.14643 1.03886 1.75436 1.18058 1.22330 1.02239 1.21616 0.93209 0.88803 0.86169 1.18140 1.21986 1.19457 0.89118 0.89786 1.25788 0.94301 0.93849 1.00752 1.70021 1.20655 1.13657 1.31755 0.86077 0.79554 0.79247 0.80734 1.18549 1.19748 1.19760 1.46018 1.35071 1.32545 1.07891 1.21513 0.91965 0.88982 1.01994 0.88389 0.88536 0.90711 0.91785 0.91834 0.90027 0.89070 0.90385 0.89139 0.92539 0.91035 0.91236 0.92134 0.91278 0.88421 0.91083 0.92515 0.91448 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.57 13.93 29.02 0.40 -1.17 16 2 C -0.14 -1.36 5.63 -101.07 -0.57 -1.93 16 3 C -0.12 -1.32 10.05 36.00 0.36 -0.96 16 4 C 0.15 1.50 5.54 -5.19 -0.03 1.48 16 5 N -0.60 -7.07 2.46 -175.06 -0.43 -7.50 16 6 C 0.10 0.94 5.69 -4.04 -0.02 0.92 16 7 C -0.18 -1.50 9.65 37.16 0.36 -1.14 16 8 C 0.54 8.18 6.82 -10.98 -0.07 8.11 16 9 O -0.52 -9.16 14.63 5.56 0.08 -9.07 16 10 C -0.09 -1.55 1.87 -27.89 -0.05 -1.60 16 11 H 0.12 1.96 6.40 -51.92 -0.33 1.62 16 12 C -0.15 -2.37 8.87 37.16 0.33 -2.04 16 13 S 0.01 0.17 20.49 -107.50 -2.20 -2.03 16 14 C 0.04 0.87 7.69 -87.28 -0.67 0.20 16 15 N -0.29 -7.53 9.81 30.89 0.30 -7.22 16 16 N -0.33 -9.77 10.48 31.26 0.33 -9.44 16 17 C 0.35 9.57 7.53 -154.82 -1.17 8.41 16 18 C -0.45 -11.74 9.04 -38.32 -0.35 -12.08 16 19 H 0.08 2.02 7.31 -52.48 -0.38 1.63 16 20 C 0.08 1.98 5.50 -17.29 -0.10 1.89 16 21 N -0.74 -19.93 11.94 55.56 0.66 -19.27 16 22 Si 0.92 18.38 29.56 -169.99 -5.03 13.36 16 23 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 24 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 25 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 26 N -0.51 -12.39 3.26 -123.17 -0.40 -12.79 16 27 C 0.10 1.87 10.87 59.85 0.65 2.52 16 28 H 0.10 0.77 8.05 -52.48 -0.42 0.35 16 29 H 0.10 0.69 7.99 -52.49 -0.42 0.27 16 30 H 0.07 0.95 6.98 -51.93 -0.36 0.59 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.63 7.92 -51.93 -0.41 0.22 16 34 H 0.09 1.02 7.35 -51.93 -0.38 0.64 16 35 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 36 H 0.09 0.99 5.64 -51.93 -0.29 0.70 16 37 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.68 5.74 -51.93 -0.30 0.38 16 40 H 0.06 0.95 8.13 -51.93 -0.42 0.52 16 41 H 0.07 0.92 4.43 -51.93 -0.23 0.69 16 42 H 0.10 1.93 5.82 -51.93 -0.30 1.63 16 43 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.07 1.12 7.84 -51.92 -0.41 0.72 16 46 H 0.08 1.37 7.53 -51.93 -0.39 0.97 16 LS Contribution 386.92 15.07 5.83 5.83 Total: -1.00 -32.97 386.92 -8.50 -41.47 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -6.73 Total: 4.09 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -0.92 Total: 2.58 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: 0.46 Total: -56.22 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.08 Total: -9.07 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.36 kcal Atomic # 16 Polarization: 0.17 SS G_CDS: -2.20 Total: -2.03 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.97 -8.50 -41.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279864931.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.494 kcal (2) G-P(sol) polarization free energy of solvation -32.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds