Wall clock time and date at job start Tue Mar 31 2020 21:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50692 * 120.00322 * 2 1 4 4 C 1.50704 * 119.99541 * 179.97438 * 2 1 3 5 5 N 1.46495 * 109.47101 * 95.00110 * 4 2 1 6 6 C 1.46497 * 120.00106 * 269.99853 * 5 4 2 7 7 C 1.53002 * 109.47029 * 275.85063 * 6 5 4 8 8 C 1.34785 * 120.00249 * 89.99709 * 5 4 2 9 9 O 1.21277 * 119.99674 * 5.07825 * 8 5 4 10 10 C 1.50697 * 120.00014 * 185.07857 * 8 5 4 11 11 H 1.08998 * 109.47542 * 38.36624 * 10 8 5 12 12 C 1.52999 * 109.47239 * 278.36684 * 10 8 5 13 13 S 1.81002 * 109.46942 * 158.36585 * 10 8 5 14 14 C 1.76201 * 99.99898 * 184.99775 * 13 10 8 15 15 N 1.32389 * 126.25852 * 0.02562 * 14 13 10 16 16 N 1.28519 * 110.20234 * 179.97438 * 15 14 13 17 17 C 1.33096 * 109.74492 * 359.97438 * 16 15 14 18 18 C 1.39776 * 126.55982 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99937 * 179.97438 * 18 17 16 20 20 C 1.40082 * 120.00652 * 359.97438 * 18 17 16 21 21 N 1.30820 * 119.99238 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00447 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47125 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47191 * 119.99470 * 22 20 18 25 25 H 1.48499 * 109.46830 * 239.99520 * 22 20 18 26 26 N 1.36669 * 126.26177 * 179.97438 * 14 13 10 27 27 C 1.46510 * 127.14858 * 0.26507 * 26 14 13 28 28 H 1.08008 * 119.99722 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.00341 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47602 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47295 * 300.00134 * 3 2 1 32 32 H 1.09000 * 109.47534 * 59.99898 * 3 2 1 33 33 H 1.08996 * 109.47337 * 334.99818 * 4 2 1 34 34 H 1.09007 * 109.46984 * 215.00055 * 4 2 1 35 35 H 1.09003 * 109.47182 * 35.85081 * 6 5 4 36 36 H 1.09001 * 109.47320 * 155.84989 * 6 5 4 37 37 H 1.09002 * 109.47155 * 66.66685 * 7 6 5 38 38 H 1.08996 * 109.47254 * 186.66746 * 7 6 5 39 39 H 1.08997 * 109.47420 * 306.67090 * 7 6 5 40 40 H 1.09002 * 109.46608 * 306.95431 * 12 10 8 41 41 H 1.09000 * 109.47074 * 66.94775 * 12 10 8 42 42 H 1.08998 * 109.47277 * 186.95160 * 12 10 8 43 43 H 0.97003 * 119.99485 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.46692 * 269.68288 * 27 26 14 45 45 H 1.09008 * 109.46816 * 29.68294 * 27 26 14 46 46 H 1.09000 * 109.47151 * 149.67858 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0634 -1.3052 0.0006 5 7 2.4118 -1.6685 -1.3752 6 6 1.4914 -2.4821 -2.1734 7 6 1.7176 -3.9627 -1.8610 8 6 3.5791 -1.2543 -1.9066 9 8 4.3816 -0.6599 -1.2185 10 6 3.8870 -1.5297 -3.3559 11 1 2.9799 -1.4130 -3.9487 12 6 4.4120 -2.9593 -3.5030 13 16 5.1425 -0.3631 -3.9381 14 6 5.1967 -0.7984 -5.6447 15 7 4.4743 -1.7368 -6.2366 16 7 4.7605 -1.7936 -7.4883 17 6 5.6911 -0.8873 -7.7783 18 6 6.2567 -0.6472 -9.0338 19 1 7.0084 0.1196 -9.1497 20 6 5.8486 -1.4009 -10.1418 21 7 4.9384 -2.3300 -10.0013 22 14 6.6050 -1.0805 -11.8194 23 1 7.6034 0.0135 -11.7114 24 1 7.2730 -2.3146 -12.3051 25 1 5.5396 -0.6852 -12.7753 26 7 5.9913 -0.2286 -6.5994 27 6 6.9631 0.8517 -6.4123 28 1 -0.5400 0.9354 0.0004 29 1 -0.5401 -0.9353 0.0004 30 1 3.1352 1.1058 -0.0005 31 1 1.8002 1.8766 -0.8899 32 1 1.8002 1.8766 0.8900 33 1 1.4385 -2.0853 0.4352 34 1 2.9741 -1.1987 0.5900 35 1 0.4637 -2.2123 -1.9302 36 1 1.6732 -2.3024 -3.2330 37 1 1.4226 -4.1661 -0.8316 38 1 1.1189 -4.5724 -2.5377 39 1 2.7724 -4.2046 -1.9911 40 1 5.2450 -3.1127 -2.8170 41 1 3.6146 -3.6649 -3.2698 42 1 4.7502 -3.1186 -4.5268 43 1 4.6560 -2.8522 -10.7684 44 1 6.4726 1.8126 -6.5676 45 1 7.3644 0.8080 -5.3997 46 1 7.7754 0.7381 -7.1302 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279864931.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:08 Heat of formation + Delta-G solvation = 38.760284 kcal Electronic energy + Delta-G solvation = -27359.202676 eV Core-core repulsion = 23604.445195 eV Total energy + Delta-G solvation = -3754.757480 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.44374 -41.31464 -37.72835 -36.12163 -35.61209 -35.15988 -33.87014 -31.48460 -31.22360 -28.43872 -28.22062 -27.73980 -27.35253 -25.18186 -24.32381 -22.77106 -22.48406 -20.62166 -19.32995 -19.18688 -18.45878 -18.19844 -17.37395 -17.06008 -16.55429 -16.46395 -16.12467 -15.63920 -15.42241 -15.26573 -14.99638 -14.79118 -14.61924 -14.04595 -14.02053 -13.84292 -13.77705 -13.54311 -13.48819 -13.16014 -12.98307 -12.91240 -12.78143 -12.76163 -12.56514 -12.45543 -12.15830 -12.11274 -11.93753 -11.63123 -11.45618 -11.37834 -10.97562 -10.56988 -10.33816 -10.25615 -10.05622 -9.77151 -8.56356 -8.53568 -6.56390 0.26483 1.06314 1.18370 1.19894 1.42871 1.44936 1.60122 1.61573 2.13970 2.19676 2.45921 2.51197 3.26442 3.35338 3.73426 3.88188 3.91610 3.97217 4.07357 4.11179 4.30329 4.43800 4.46089 4.47962 4.60615 4.61194 4.66817 4.69331 4.74651 4.79101 4.88058 4.90024 4.94589 4.97928 5.05141 5.11529 5.17129 5.34234 5.43352 5.48747 5.58532 5.66356 5.88797 6.04376 6.18338 6.23447 6.77264 6.92973 6.94973 8.42173 8.65428 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020179 B = 0.002775 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.250457 B =10088.495771 C =10682.063990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.161 4.161 3 C -0.120 4.120 4 C 0.149 3.851 5 N -0.592 5.592 6 C 0.092 3.908 7 C -0.173 4.173 8 C 0.544 3.456 9 O -0.553 6.553 10 C -0.090 4.090 11 H 0.113 0.887 12 C -0.138 4.138 13 S 0.024 5.976 14 C 0.047 3.953 15 N -0.313 5.313 16 N -0.384 5.384 17 C 0.318 3.682 18 C -0.471 4.471 19 H 0.101 0.899 20 C 0.030 3.970 21 N -0.785 5.785 22 Si 1.005 2.995 23 H -0.248 1.248 24 H -0.267 1.267 25 H -0.267 1.267 26 N -0.521 5.521 27 C 0.093 3.907 28 H 0.104 0.896 29 H 0.118 0.882 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.097 0.903 42 H 0.060 0.940 43 H 0.284 0.716 44 H 0.073 0.927 45 H 0.086 0.914 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.077 1.688 16.223 17.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.162 4.162 3 C -0.177 4.177 4 C 0.028 3.972 5 N -0.324 5.324 6 C -0.030 4.030 7 C -0.231 4.231 8 C 0.330 3.670 9 O -0.431 6.431 10 C -0.223 4.223 11 H 0.131 0.869 12 C -0.197 4.197 13 S 0.251 5.749 14 C -0.326 4.326 15 N -0.158 5.158 16 N -0.231 5.231 17 C 0.072 3.928 18 C -0.511 4.511 19 H 0.119 0.881 20 C -0.191 4.191 21 N -0.410 5.410 22 Si 0.824 3.176 23 H -0.171 1.171 24 H -0.192 1.192 25 H -0.192 1.192 26 N -0.222 5.222 27 C -0.050 4.050 28 H 0.122 0.878 29 H 0.136 0.864 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.132 0.868 34 H 0.094 0.906 35 H 0.123 0.877 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.115 0.885 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.105 0.895 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.205 1.523 16.974 18.503 hybrid contribution 0.542 0.206 -1.563 1.667 sum -6.664 1.729 15.411 16.879 Atomic orbital electron populations 1.23924 0.94463 1.03188 0.98594 1.22104 0.96130 0.95784 1.02206 1.20827 0.99954 0.95145 1.01776 1.20643 1.00208 0.94683 0.81701 1.47935 1.17894 1.51732 1.14844 1.21924 0.94364 0.91128 0.95604 1.22328 1.02527 0.94732 1.03488 1.19650 0.81967 0.78146 0.87253 1.90674 1.47901 1.42472 1.62062 1.23300 1.01670 1.00425 0.96855 0.86904 1.22084 1.02281 0.91938 1.03400 1.84897 1.52627 1.46606 0.90790 1.26368 1.03709 1.04523 0.98034 1.74351 1.21853 1.16252 1.03344 1.75311 1.19844 1.24206 1.03717 1.22018 0.93682 0.89435 0.87656 1.18630 1.22713 1.20427 0.89336 0.88136 1.26932 0.94247 0.92909 1.04971 1.70152 1.22407 1.14996 1.33443 0.84826 0.78721 0.79468 0.74586 1.17072 1.19206 1.19211 1.46339 1.35647 1.33210 1.07043 1.21835 0.91483 0.88109 1.03553 0.87777 0.86427 0.93211 0.92785 0.90420 0.86809 0.90565 0.87747 0.90754 0.90693 0.89897 0.92807 0.91852 0.88462 0.92086 0.90537 0.90825 0.89547 0.89154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 13.93 67.78 0.94 -1.27 16 2 C -0.16 -2.89 5.63 -16.49 -0.09 -2.98 16 3 C -0.12 -2.51 10.05 71.23 0.72 -1.80 16 4 C 0.15 2.68 5.54 85.64 0.47 3.15 16 5 N -0.59 -12.89 2.46 -826.15 -2.03 -14.92 16 6 C 0.09 1.57 5.69 86.38 0.49 2.06 16 7 C -0.17 -2.48 9.65 71.98 0.69 -1.79 16 8 C 0.54 16.19 6.82 87.65 0.60 16.79 16 9 O -0.55 -19.35 14.63 -3.02 -0.04 -19.39 16 10 C -0.09 -3.00 1.87 29.85 0.06 -2.95 16 11 H 0.11 3.87 6.40 -2.40 -0.02 3.86 16 12 C -0.14 -4.51 8.87 71.98 0.64 -3.87 16 13 S 0.02 0.96 20.49 -56.49 -1.16 -0.20 16 14 C 0.05 2.29 7.69 179.18 1.38 3.67 16 15 N -0.31 -17.15 9.81 -56.17 -0.55 -17.70 16 16 N -0.38 -23.51 10.48 -55.03 -0.58 -24.09 16 17 C 0.32 18.13 7.53 133.23 1.00 19.13 16 18 C -0.47 -25.13 9.04 23.09 0.21 -24.92 16 19 H 0.10 4.80 7.31 -2.91 -0.02 4.78 16 20 C 0.03 1.55 5.50 85.29 0.47 2.02 16 21 N -0.78 -43.84 11.94 21.86 0.26 -43.58 16 22 Si 1.00 37.59 29.56 68.60 2.03 39.62 16 23 H -0.25 -8.60 7.11 99.48 0.71 -7.89 16 24 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 25 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 26 N -0.52 -25.55 3.26 -543.60 -1.77 -27.32 16 27 C 0.09 3.40 10.87 127.77 1.39 4.79 16 28 H 0.10 1.31 8.05 -2.91 -0.02 1.28 16 29 H 0.12 1.11 7.99 -2.91 -0.02 1.09 16 30 H 0.05 1.28 6.98 -2.39 -0.02 1.26 16 31 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.11 1.32 7.92 -2.39 -0.02 1.30 16 34 H 0.08 1.63 7.35 -2.38 -0.02 1.62 16 35 H 0.10 1.28 8.12 -2.39 -0.02 1.26 16 36 H 0.07 1.55 5.64 -2.39 -0.01 1.54 16 37 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.05 0.95 5.74 -2.39 -0.01 0.94 16 40 H 0.06 1.99 8.13 -2.39 -0.02 1.97 16 41 H 0.10 2.56 4.43 -2.39 -0.01 2.55 16 42 H 0.06 2.50 5.82 -2.39 -0.01 2.48 16 43 H 0.28 14.27 8.30 -92.71 -0.77 13.50 16 44 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.09 2.79 7.84 -2.38 -0.02 2.77 16 46 H 0.09 3.06 7.53 -2.39 -0.02 3.04 16 Total: -1.00 -75.56 386.92 6.12 -69.44 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: 0.99 Total: 26.11 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 8.97 Total: 12.04 kcal Atomic # 7 Polarization: -122.94 SS G_CDS: -4.67 Total: -127.61 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.04 Total: -19.39 kcal Atomic # 14 Polarization: 37.59 SS G_CDS: 2.03 Total: 39.62 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -1.16 Total: -0.20 kcal Total: -75.56 6.12 -69.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279864931.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.201 kcal (2) G-P(sol) polarization free energy of solvation -75.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds