Wall clock time and date at job start Tue Mar 31 2020 21:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46789 * 2 1 4 4 S 1.81000 * 109.47260 * 120.00564 * 2 1 3 5 5 C 1.76204 * 99.99786 * 294.99545 * 4 2 1 6 6 N 1.32389 * 126.25914 * 0.03042 * 5 4 2 7 7 N 1.28516 * 110.20242 * 179.97438 * 6 5 4 8 8 C 1.33098 * 109.74574 * 359.97438 * 7 6 5 9 9 C 1.39776 * 126.56257 * 180.02562 * 8 7 6 10 10 H 1.07999 * 119.99778 * 186.09356 * 9 8 7 11 11 C 1.40085 * 120.00068 * 6.08606 * 9 8 7 12 12 N 1.30808 * 119.99942 * 184.12744 * 11 9 8 13 13 Si 1.86799 * 119.99669 * 4.13543 * 11 9 8 14 14 H 1.48509 * 109.46950 * 179.97438 * 13 11 9 15 15 H 1.48495 * 109.47355 * 299.99259 * 13 11 9 16 16 H 1.48501 * 109.47215 * 59.99928 * 13 11 9 17 17 N 1.36671 * 126.25846 * 180.29350 * 5 4 2 18 18 C 1.46504 * 127.15199 * 0.04162 * 17 5 4 19 19 C 1.50703 * 109.46654 * 240.00071 * 2 1 3 20 20 O 1.21276 * 120.00208 * 264.99801 * 19 2 1 21 21 N 1.34779 * 119.99831 * 85.00415 * 19 2 1 22 22 C 1.46497 * 119.99990 * 179.97438 * 21 19 2 23 23 C 1.52994 * 109.47204 * 274.99619 * 22 21 19 24 24 C 1.53001 * 109.47657 * 180.02562 * 23 22 21 25 25 C 1.53004 * 109.46774 * 59.99846 * 24 23 22 26 26 C 1.53000 * 109.47130 * 299.99942 * 25 24 23 27 27 C 1.53000 * 109.46933 * 60.00560 * 26 25 24 28 28 H 1.09003 * 109.47104 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46629 * 299.99597 * 1 2 3 30 30 H 1.08998 * 109.47344 * 59.99573 * 1 2 3 31 31 H 0.97000 * 120.00392 * 354.84969 * 12 11 9 32 32 H 1.09000 * 109.46642 * 270.17152 * 18 17 5 33 33 H 1.08991 * 109.47275 * 30.17219 * 18 17 5 34 34 H 1.08996 * 109.46979 * 150.17779 * 18 17 5 35 35 H 0.97003 * 120.00178 * 359.97438 * 21 19 2 36 36 H 1.08999 * 109.47236 * 34.99850 * 22 21 19 37 37 H 1.08999 * 109.47213 * 300.00245 * 23 22 21 38 38 H 1.09000 * 109.46842 * 59.99544 * 23 22 21 39 39 H 1.08999 * 109.46924 * 300.00317 * 24 23 22 40 40 H 1.08997 * 109.47180 * 179.97438 * 24 23 22 41 41 H 1.09001 * 109.46550 * 180.02562 * 25 24 23 42 42 H 1.08999 * 109.47011 * 60.00525 * 25 24 23 43 43 H 1.08999 * 109.47650 * 300.00191 * 26 25 24 44 44 H 1.08998 * 109.47020 * 180.02562 * 26 25 24 45 45 H 1.09000 * 109.47362 * 179.97438 * 27 26 25 46 46 H 1.08999 * 109.47254 * 59.99389 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 16 2.1334 -0.8534 1.4778 5 6 1.5441 0.2421 2.7257 6 7 0.8574 1.3567 2.5286 7 7 0.5854 1.9153 3.6536 8 6 1.0844 1.1869 4.6495 9 6 0.9926 1.4699 6.0153 10 1 1.5214 0.8573 6.7304 11 6 0.2147 2.5482 6.4564 12 7 0.1929 2.8628 7.7259 13 14 -0.7914 3.5367 5.2316 14 1 -1.5209 4.6150 5.9462 15 1 0.1129 4.1375 4.2186 16 1 -1.7668 2.6431 4.5567 17 7 1.7166 0.0992 4.0739 18 6 2.4214 -0.9828 4.7660 19 6 2.0323 -0.7104 -1.2305 20 8 2.3207 -1.8871 -1.1761 21 7 2.1610 -0.0380 -2.3915 22 6 2.6497 -0.7284 -3.5876 23 6 4.1797 -0.7279 -3.5873 24 6 4.6902 -1.4484 -4.8368 25 6 4.1801 -0.7267 -6.0858 26 6 2.6501 -0.7274 -6.0861 27 6 2.1397 -0.0068 -4.8366 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 0.6547 2.3056 8.3717 32 1 1.7211 -1.7874 4.9902 33 1 3.2194 -1.3628 4.1283 34 1 2.8478 -0.6031 5.6944 35 1 1.9300 0.9031 -2.4351 36 1 2.2867 -1.7562 -3.5876 37 1 4.5427 0.2999 -3.5873 38 1 4.5430 -1.2416 -2.6973 39 1 4.3272 -2.4762 -4.8373 40 1 5.7802 -1.4476 -4.8368 41 1 4.5435 -1.2403 -6.9759 42 1 4.5431 0.3010 -6.0853 43 1 2.2872 -1.7552 -6.0866 44 1 2.2868 -0.2137 -6.9761 45 1 1.0497 -0.0068 -4.8370 46 1 2.5027 1.0209 -4.8361 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279867113.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:11 Heat of formation + Delta-G solvation = -2.946180 kcal Electronic energy + Delta-G solvation = -26803.148180 eV Core-core repulsion = 23046.582171 eV Total energy + Delta-G solvation = -3756.566008 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.96088 -40.24525 -38.28619 -34.41499 -34.00583 -33.63575 -32.97095 -31.12893 -30.02218 -29.41281 -26.75112 -25.35322 -24.74635 -23.02625 -22.49351 -21.47505 -20.71281 -20.37142 -19.89098 -18.22141 -17.50103 -16.92433 -16.32695 -15.45950 -15.29844 -15.09361 -14.99681 -14.50823 -14.36421 -14.25727 -14.04572 -13.72251 -13.33135 -13.12847 -12.98966 -12.81760 -12.66376 -12.56806 -12.33906 -12.09105 -11.92069 -11.73418 -11.60125 -11.51292 -11.07524 -11.03844 -10.87528 -10.81134 -10.58505 -10.20564 -9.88640 -9.82273 -9.58149 -9.39700 -9.24553 -9.11011 -8.69446 -8.42224 -7.44735 -7.09454 -4.85964 1.60004 2.45265 2.63027 2.88406 3.04341 3.54602 3.57031 3.85142 4.02387 4.11453 4.29624 4.37651 4.38328 4.49109 4.65891 4.78455 4.87845 4.99601 5.08044 5.08567 5.12980 5.13424 5.24412 5.26064 5.38394 5.40803 5.65374 5.70042 5.72290 5.72540 5.73086 5.75312 5.86876 5.91547 5.95940 5.99503 6.06016 6.30175 6.32238 6.43039 6.67391 7.10261 7.27448 7.37907 7.51008 8.02770 8.05054 8.32763 8.53552 9.93904 10.07834 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024984 B = 0.002436 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.426643 B =11489.643602 C =12145.678845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 H 0.116 0.884 4 S 0.022 5.978 5 C 0.057 3.943 6 N -0.271 5.271 7 N -0.416 5.416 8 C 0.345 3.655 9 C -0.491 4.491 10 H 0.083 0.917 11 C 0.064 3.936 12 N -0.807 5.807 13 Si 1.113 2.887 14 H -0.312 1.312 15 H -0.260 1.260 16 H -0.280 1.280 17 N -0.511 5.511 18 C 0.101 3.899 19 C 0.540 3.460 20 O -0.525 6.525 21 N -0.724 5.724 22 C 0.147 3.853 23 C -0.131 4.131 24 C -0.117 4.117 25 C -0.122 4.122 26 C -0.115 4.115 27 C -0.127 4.127 28 H 0.064 0.936 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.283 0.717 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.402 0.598 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.967 -6.646 -22.527 24.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.231 4.231 3 H 0.134 0.866 4 S 0.248 5.752 5 C -0.317 4.317 6 N -0.114 5.114 7 N -0.266 5.266 8 C 0.102 3.898 9 C -0.532 4.532 10 H 0.101 0.899 11 C -0.159 4.159 12 N -0.431 5.431 13 Si 0.942 3.058 14 H -0.242 1.242 15 H -0.186 1.186 16 H -0.207 1.207 17 N -0.212 5.212 18 C -0.044 4.044 19 C 0.325 3.675 20 O -0.401 6.401 21 N -0.376 5.376 22 C 0.042 3.958 23 C -0.170 4.170 24 C -0.155 4.155 25 C -0.160 4.160 26 C -0.153 4.153 27 C -0.165 4.165 28 H 0.083 0.917 29 H 0.116 0.884 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.237 0.763 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.155 -6.131 -23.181 24.526 hybrid contribution 1.118 -0.894 1.120 1.817 sum 6.272 -7.025 -22.061 23.987 Atomic orbital electron populations 1.22017 0.89958 1.03340 1.04671 1.23238 1.02094 1.03918 0.93856 0.86580 1.85132 1.70206 1.27650 0.92198 1.25684 1.14493 1.04252 0.87262 1.74164 1.12641 1.03663 1.20979 1.73968 1.32690 1.26123 0.93834 1.21712 0.89883 0.82568 0.95598 1.19396 1.29844 1.15972 0.88012 0.89906 1.27365 0.94431 0.95011 0.99101 1.70672 1.34562 1.35300 1.02566 0.82687 0.76133 0.75001 0.71963 1.24199 1.18609 1.20696 1.45814 1.48737 1.22399 1.04203 1.21557 0.96236 0.88880 0.97702 1.19882 0.76813 0.86987 0.83853 1.90716 1.49129 1.15559 1.84679 1.45995 1.67862 1.14236 1.09461 1.20991 0.93850 0.97616 0.83314 1.21940 0.95101 1.01245 0.98695 1.21495 1.00464 0.99583 0.93947 1.21582 0.95512 1.00920 0.97937 1.21476 0.95817 1.00963 0.97091 1.21818 1.01055 0.99848 0.93794 0.91684 0.88430 0.92004 0.90540 0.92033 0.91128 0.90229 0.76317 0.89363 0.91719 0.91206 0.91717 0.91712 0.91893 0.91878 0.91646 0.91514 0.91172 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.99 37.16 0.33 -1.74 16 2 C -0.10 -1.48 2.69 -27.88 -0.07 -1.55 16 3 H 0.12 1.70 8.14 -51.92 -0.42 1.28 16 4 S 0.02 0.39 20.54 -107.50 -2.21 -1.82 16 5 C 0.06 1.27 7.77 -87.28 -0.68 0.59 16 6 N -0.27 -6.64 9.74 30.89 0.30 -6.34 16 7 N -0.42 -11.27 7.51 31.26 0.23 -11.04 16 8 C 0.35 9.11 7.27 -154.81 -1.13 7.99 16 9 C -0.49 -13.10 9.50 -38.31 -0.36 -13.46 16 10 H 0.08 2.15 7.47 -52.49 -0.39 1.76 16 11 C 0.06 1.71 5.52 -17.29 -0.10 1.61 16 12 N -0.81 -21.56 13.65 55.56 0.76 -20.80 16 13 Si 1.11 27.69 25.90 -169.99 -4.40 23.29 16 14 H -0.31 -7.48 7.11 56.52 0.40 -7.08 16 15 H -0.26 -6.64 6.76 56.52 0.38 -6.26 16 16 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 17 N -0.51 -11.78 3.26 -123.18 -0.40 -12.18 16 18 C 0.10 1.81 10.89 59.85 0.65 2.46 16 19 C 0.54 7.42 6.92 -10.98 -0.08 7.35 16 20 O -0.53 -8.83 15.80 5.56 0.09 -8.74 16 21 N -0.72 -7.25 5.08 -53.81 -0.27 -7.52 16 22 C 0.15 1.31 2.46 -67.93 -0.17 1.14 16 23 C -0.13 -1.16 5.49 -26.73 -0.15 -1.30 16 24 C -0.12 -0.84 5.92 -26.73 -0.16 -0.99 16 25 C -0.12 -0.72 5.92 -26.73 -0.16 -0.87 16 26 C -0.12 -0.67 5.92 -26.73 -0.16 -0.83 16 27 C -0.13 -0.82 5.39 -26.73 -0.14 -0.97 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.10 1.76 5.89 -51.93 -0.31 1.45 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.28 7.20 8.72 -40.82 -0.36 6.84 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.11 7.85 -51.93 -0.41 0.70 16 34 H 0.08 1.37 7.48 -51.93 -0.39 0.98 16 35 H 0.40 3.13 8.60 -40.82 -0.35 2.78 16 36 H 0.09 0.95 7.58 -51.93 -0.39 0.56 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 380.68 15.07 5.74 5.74 Total: -1.00 -32.14 380.68 -9.86 -42.00 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -7.33 Total: -2.00 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -2.36 Total: -0.58 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: 0.62 Total: -57.88 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.09 Total: -8.74 kcal Atomic # 14 Polarization: 27.69 SS G_CDS: -4.40 Total: 23.29 kcal Atomic # 16 Polarization: 0.39 SS G_CDS: -2.21 Total: -1.82 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.14 -9.86 -42.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279867113.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.051 kcal (2) G-P(sol) polarization free energy of solvation -32.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds