Wall clock time and date at job start Tue Mar 31 2020 21:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46789 * 2 1 4 4 S 1.81000 * 109.47260 * 120.00564 * 2 1 3 5 5 C 1.76204 * 99.99786 * 294.99545 * 4 2 1 6 6 N 1.32389 * 126.25914 * 0.03042 * 5 4 2 7 7 N 1.28516 * 110.20242 * 179.97438 * 6 5 4 8 8 C 1.33098 * 109.74574 * 359.97438 * 7 6 5 9 9 C 1.39776 * 126.56257 * 180.02562 * 8 7 6 10 10 H 1.07999 * 119.99778 * 186.09356 * 9 8 7 11 11 C 1.40085 * 120.00068 * 6.08606 * 9 8 7 12 12 N 1.30808 * 119.99942 * 184.12744 * 11 9 8 13 13 Si 1.86799 * 119.99669 * 4.13543 * 11 9 8 14 14 H 1.48509 * 109.46950 * 179.97438 * 13 11 9 15 15 H 1.48495 * 109.47355 * 299.99259 * 13 11 9 16 16 H 1.48501 * 109.47215 * 59.99928 * 13 11 9 17 17 N 1.36671 * 126.25846 * 180.29350 * 5 4 2 18 18 C 1.46504 * 127.15199 * 0.04162 * 17 5 4 19 19 C 1.50703 * 109.46654 * 240.00071 * 2 1 3 20 20 O 1.21276 * 120.00208 * 264.99801 * 19 2 1 21 21 N 1.34779 * 119.99831 * 85.00415 * 19 2 1 22 22 C 1.46497 * 119.99990 * 179.97438 * 21 19 2 23 23 C 1.52994 * 109.47204 * 274.99619 * 22 21 19 24 24 C 1.53001 * 109.47657 * 180.02562 * 23 22 21 25 25 C 1.53004 * 109.46774 * 59.99846 * 24 23 22 26 26 C 1.53000 * 109.47130 * 299.99942 * 25 24 23 27 27 C 1.53000 * 109.46933 * 60.00560 * 26 25 24 28 28 H 1.09003 * 109.47104 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46629 * 299.99597 * 1 2 3 30 30 H 1.08998 * 109.47344 * 59.99573 * 1 2 3 31 31 H 0.97000 * 120.00392 * 354.84969 * 12 11 9 32 32 H 1.09000 * 109.46642 * 270.17152 * 18 17 5 33 33 H 1.08991 * 109.47275 * 30.17219 * 18 17 5 34 34 H 1.08996 * 109.46979 * 150.17779 * 18 17 5 35 35 H 0.97003 * 120.00178 * 359.97438 * 21 19 2 36 36 H 1.08999 * 109.47236 * 34.99850 * 22 21 19 37 37 H 1.08999 * 109.47213 * 300.00245 * 23 22 21 38 38 H 1.09000 * 109.46842 * 59.99544 * 23 22 21 39 39 H 1.08999 * 109.46924 * 300.00317 * 24 23 22 40 40 H 1.08997 * 109.47180 * 179.97438 * 24 23 22 41 41 H 1.09001 * 109.46550 * 180.02562 * 25 24 23 42 42 H 1.08999 * 109.47011 * 60.00525 * 25 24 23 43 43 H 1.08999 * 109.47650 * 300.00191 * 26 25 24 44 44 H 1.08998 * 109.47020 * 180.02562 * 26 25 24 45 45 H 1.09000 * 109.47362 * 179.97438 * 27 26 25 46 46 H 1.08999 * 109.47254 * 59.99389 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 16 2.1334 -0.8534 1.4778 5 6 1.5441 0.2421 2.7257 6 7 0.8574 1.3567 2.5286 7 7 0.5854 1.9153 3.6536 8 6 1.0844 1.1869 4.6495 9 6 0.9926 1.4699 6.0153 10 1 1.5214 0.8573 6.7304 11 6 0.2147 2.5482 6.4564 12 7 0.1929 2.8628 7.7259 13 14 -0.7914 3.5367 5.2316 14 1 -1.5209 4.6150 5.9462 15 1 0.1129 4.1375 4.2186 16 1 -1.7668 2.6431 4.5567 17 7 1.7166 0.0992 4.0739 18 6 2.4214 -0.9828 4.7660 19 6 2.0323 -0.7104 -1.2305 20 8 2.3207 -1.8871 -1.1761 21 7 2.1610 -0.0380 -2.3915 22 6 2.6497 -0.7284 -3.5876 23 6 4.1797 -0.7279 -3.5873 24 6 4.6902 -1.4484 -4.8368 25 6 4.1801 -0.7267 -6.0858 26 6 2.6501 -0.7274 -6.0861 27 6 2.1397 -0.0068 -4.8366 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 0.6547 2.3056 8.3717 32 1 1.7211 -1.7874 4.9902 33 1 3.2194 -1.3628 4.1283 34 1 2.8478 -0.6031 5.6944 35 1 1.9300 0.9031 -2.4351 36 1 2.2867 -1.7562 -3.5876 37 1 4.5427 0.2999 -3.5873 38 1 4.5430 -1.2416 -2.6973 39 1 4.3272 -2.4762 -4.8373 40 1 5.7802 -1.4476 -4.8368 41 1 4.5435 -1.2403 -6.9759 42 1 4.5431 0.3010 -6.0853 43 1 2.2872 -1.7552 -6.0866 44 1 2.2868 -0.2137 -6.9761 45 1 1.0497 -0.0068 -4.8370 46 1 2.5027 1.0209 -4.8361 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279867113.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:10 Heat of formation + Delta-G solvation = -21.632459 kcal Electronic energy + Delta-G solvation = -26803.958477 eV Core-core repulsion = 23046.582171 eV Total energy + Delta-G solvation = -3757.376306 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.84507 -41.22505 -39.05176 -35.95081 -35.44255 -35.33230 -34.16475 -31.92224 -31.68901 -30.18137 -28.42053 -27.22743 -25.86328 -23.61944 -23.36078 -23.21756 -22.24066 -21.53569 -20.70037 -20.18191 -18.83261 -18.01669 -17.52226 -16.93976 -16.86202 -16.40977 -15.95770 -15.76283 -15.64063 -15.28697 -15.06701 -14.91101 -14.85967 -14.70379 -14.24733 -13.93950 -13.74733 -13.60137 -13.42311 -13.37276 -13.12038 -13.06273 -12.89668 -12.79377 -12.24525 -12.06113 -11.93231 -11.65648 -11.56315 -11.46886 -11.38283 -11.33060 -11.21768 -10.93459 -10.90794 -10.55353 -10.35331 -10.12727 -9.48411 -8.73656 -6.85040 0.13520 0.97492 0.98826 1.46269 1.55800 1.61381 1.95377 2.05033 2.13373 2.21727 2.42705 3.05258 3.49807 3.72420 3.76086 3.83288 3.92441 4.01120 4.04636 4.22270 4.31033 4.31883 4.45307 4.46717 4.54459 4.55176 4.57388 4.61688 4.67130 4.69855 4.75857 4.89182 5.06729 5.12558 5.19606 5.20586 5.22458 5.25522 5.32716 5.37607 5.38995 5.44128 5.55640 5.69611 6.01239 6.36334 6.39751 6.57103 7.04326 7.93026 8.15299 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024984 B = 0.002436 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.426643 B =11489.643602 C =12145.678845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.097 4.097 3 H 0.124 0.876 4 S 0.039 5.961 5 C 0.074 3.926 6 N -0.295 5.295 7 N -0.444 5.444 8 C 0.326 3.674 9 C -0.508 4.508 10 H 0.081 0.919 11 C 0.040 3.960 12 N -0.823 5.823 13 Si 1.147 2.853 14 H -0.300 1.300 15 H -0.274 1.274 16 H -0.292 1.292 17 N -0.514 5.514 18 C 0.092 3.908 19 C 0.546 3.454 20 O -0.559 6.559 21 N -0.705 5.705 22 C 0.146 3.854 23 C -0.128 4.128 24 C -0.116 4.116 25 C -0.119 4.119 26 C -0.115 4.115 27 C -0.120 4.120 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.285 0.715 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.416 0.584 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.041 0.959 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.491 -6.887 -25.256 26.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.229 4.229 3 H 0.142 0.858 4 S 0.265 5.735 5 C -0.301 4.301 6 N -0.138 5.138 7 N -0.293 5.293 8 C 0.079 3.921 9 C -0.549 4.549 10 H 0.100 0.900 11 C -0.180 4.180 12 N -0.448 5.448 13 Si 0.975 3.025 14 H -0.229 1.229 15 H -0.200 1.200 16 H -0.220 1.220 17 N -0.214 5.214 18 C -0.050 4.050 19 C 0.330 3.670 20 O -0.438 6.438 21 N -0.356 5.356 22 C 0.042 3.958 23 C -0.167 4.167 24 C -0.154 4.154 25 C -0.156 4.156 26 C -0.153 4.153 27 C -0.158 4.158 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.113 0.887 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.103 0.897 35 H 0.253 0.747 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.100 0.900 45 H 0.094 0.906 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.684 -6.348 -25.923 27.287 hybrid contribution 1.057 -0.982 1.738 2.259 sum 6.741 -7.330 -24.184 26.154 Atomic orbital electron populations 1.21920 0.89509 1.03253 1.04723 1.23369 1.02491 1.04060 0.93023 0.85836 1.85185 1.69602 1.26516 0.92191 1.26522 1.11771 1.03667 0.88148 1.74128 1.14472 1.04975 1.20193 1.73867 1.33423 1.27265 0.94711 1.21774 0.90915 0.83795 0.95569 1.19392 1.30679 1.16503 0.88344 0.90047 1.27834 0.94895 0.95631 0.99604 1.70669 1.35616 1.35872 1.02685 0.82201 0.75086 0.74422 0.70766 1.22885 1.20013 1.21991 1.46161 1.48019 1.22535 1.04670 1.21892 0.97027 0.87939 0.98156 1.19603 0.76735 0.86427 0.84249 1.90712 1.50986 1.16920 1.85165 1.45915 1.66257 1.14831 1.08645 1.21113 0.93987 0.97002 0.83732 1.21901 0.94899 1.01544 0.98370 1.21490 1.00749 0.99206 0.93920 1.21570 0.95569 1.01131 0.97363 1.21494 0.95703 1.00868 0.97226 1.21797 1.01358 1.00195 0.92488 0.91821 0.91550 0.88678 0.90345 0.90378 0.88643 0.89714 0.74653 0.91256 0.90873 0.93985 0.92420 0.91289 0.90939 0.91263 0.92083 0.89993 0.90649 0.89944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 8.99 71.98 0.65 -3.11 16 2 C -0.10 -2.74 2.69 29.85 0.08 -2.66 16 3 H 0.12 3.38 8.14 -2.40 -0.02 3.36 16 4 S 0.04 1.34 20.54 -56.49 -1.16 0.18 16 5 C 0.07 3.23 7.77 179.18 1.39 4.62 16 6 N -0.30 -14.41 9.74 -56.17 -0.55 -14.96 16 7 N -0.44 -24.20 7.51 -55.02 -0.41 -24.61 16 8 C 0.33 17.29 7.27 133.23 0.97 18.26 16 9 C -0.51 -27.40 9.50 23.09 0.22 -27.18 16 10 H 0.08 4.28 7.47 -2.91 -0.02 4.26 16 11 C 0.04 2.18 5.52 85.29 0.47 2.65 16 12 N -0.82 -44.29 13.65 21.86 0.30 -43.99 16 13 Si 1.15 57.21 25.90 68.60 1.78 58.99 16 14 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 15 H -0.27 -14.10 6.76 99.48 0.67 -13.43 16 16 H -0.29 -14.99 7.11 99.48 0.71 -14.28 16 17 N -0.51 -23.35 3.26 -543.63 -1.77 -25.12 16 18 C 0.09 3.17 10.89 127.77 1.39 4.56 16 19 C 0.55 14.08 6.92 87.66 0.61 14.69 16 20 O -0.56 -18.24 15.80 -3.02 -0.05 -18.29 16 21 N -0.70 -12.55 5.08 -442.54 -2.25 -14.80 16 22 C 0.15 2.33 2.46 44.99 0.11 2.44 16 23 C -0.13 -2.08 5.49 30.59 0.17 -1.92 16 24 C -0.12 -1.47 5.92 30.60 0.18 -1.29 16 25 C -0.12 -1.08 5.92 30.60 0.18 -0.90 16 26 C -0.11 -1.00 5.92 30.59 0.18 -0.82 16 27 C -0.12 -1.20 5.39 30.60 0.16 -1.04 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.07 2.33 5.89 -2.39 -0.01 2.32 16 30 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.29 14.66 8.72 -92.71 -0.81 13.85 16 32 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.10 2.79 7.85 -2.39 -0.02 2.77 16 34 H 0.08 2.83 7.48 -2.39 -0.02 2.81 16 35 H 0.42 5.20 8.60 -92.71 -0.80 4.41 16 36 H 0.07 1.42 7.58 -2.39 -0.02 1.40 16 37 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -69.80 380.68 2.77 -67.04 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: 0.12 Total: 7.25 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 6.76 Total: 8.31 kcal Atomic # 7 Polarization: -118.79 SS G_CDS: -4.68 Total: -123.47 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.05 Total: -18.29 kcal Atomic # 14 Polarization: 57.21 SS G_CDS: 1.78 Total: 58.99 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -1.16 Total: 0.18 kcal Total: -69.80 2.77 -67.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279867113.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.403 kcal (2) G-P(sol) polarization free energy of solvation -69.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds