Wall clock time and date at job start Tue Mar 31 2020 21:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47550 * 2 1 4 4 C 1.36538 * 127.14107 * 270.14961 * 3 2 1 5 5 S 1.76195 * 126.48452 * 0.02562 * 4 3 2 6 6 N 1.31279 * 107.02840 * 180.22901 * 4 3 2 7 7 N 1.28532 * 109.85984 * 359.77307 * 6 4 3 8 8 C 1.30296 * 110.07391 * 359.97438 * 7 6 4 9 9 C 1.50703 * 126.33867 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.52312 * 179.97438 * 9 8 7 11 11 C 1.53041 * 109.49834 * 59.86309 * 9 8 7 12 12 C 1.53033 * 109.53898 * 178.68474 * 11 9 8 13 13 C 1.53192 * 109.31270 * 61.36218 * 12 11 9 14 14 N 1.46926 * 108.77820 * 305.36633 * 13 12 11 15 15 C 1.34772 * 120.62994 * 233.62963 * 14 13 12 16 16 O 1.21285 * 120.00006 * 180.02562 * 15 14 13 17 17 C 1.50702 * 120.00175 * 359.97438 * 15 14 13 18 18 C 1.52999 * 109.47036 * 180.02562 * 17 15 14 19 19 C 1.50702 * 109.47036 * 179.97438 * 18 17 15 20 20 H 1.07993 * 120.00218 * 359.97438 * 19 18 17 21 21 C 1.37876 * 119.99756 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00447 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99978 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47118 * 89.99597 * 23 21 19 25 25 H 1.48494 * 109.47433 * 210.00056 * 23 21 19 26 26 H 1.48499 * 109.47044 * 330.00046 * 23 21 19 27 27 C 1.46927 * 118.73580 * 53.60911 * 14 13 12 28 28 H 1.09002 * 109.46891 * 59.99523 * 1 2 3 29 29 H 1.08990 * 109.47432 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46561 * 300.00177 * 1 2 3 31 31 H 1.08998 * 109.47028 * 239.99754 * 2 1 3 32 32 H 1.09002 * 109.46891 * 120.00476 * 2 1 3 33 33 H 1.41003 * 99.99943 * 270.24320 * 5 4 3 34 34 H 1.08999 * 109.45610 * 298.70272 * 11 9 8 35 35 H 1.09001 * 109.45659 * 58.66073 * 11 9 8 36 36 H 1.09000 * 109.49457 * 301.41562 * 12 11 9 37 37 H 1.08995 * 109.50116 * 181.31732 * 12 11 9 38 38 H 1.09006 * 109.58809 * 185.57967 * 13 12 11 39 39 H 1.09002 * 109.58657 * 65.15954 * 13 12 11 40 40 H 1.08997 * 109.46858 * 299.99583 * 17 15 14 41 41 H 1.08989 * 109.47225 * 60.00023 * 17 15 14 42 42 H 1.09003 * 109.47101 * 299.99816 * 18 17 15 43 43 H 1.09001 * 109.47608 * 59.99930 * 18 17 15 44 44 H 0.97004 * 120.00146 * 180.02562 * 22 21 19 45 45 H 1.08997 * 109.58859 * 66.17990 * 27 14 13 46 46 H 1.09001 * 109.58530 * 186.46228 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2906 2.1594 -1.0884 5 16 2.1203 1.6927 -2.7789 6 7 2.7075 3.3195 -0.6370 7 7 2.7072 3.3136 0.6483 8 6 2.2933 2.1598 1.0901 9 6 2.1507 1.7558 2.5350 10 1 1.7822 0.7316 2.5921 11 6 1.1635 2.6942 3.2328 12 6 0.9930 2.2647 4.6917 13 6 2.3428 2.3623 5.4096 14 7 3.3342 1.5774 4.6614 15 6 4.0649 0.6274 5.2778 16 8 4.8805 -0.0135 4.6492 17 6 3.8693 0.3621 6.7483 18 6 4.8147 -0.7548 7.1952 19 6 4.6195 -1.0197 8.6659 20 1 3.8942 -0.4483 9.2259 21 6 5.3671 -1.9916 9.2964 22 7 6.2501 -2.6878 8.6144 23 14 5.1258 -2.3194 11.1195 24 1 4.0794 -3.3573 11.3016 25 1 6.4025 -2.7948 11.7103 26 1 4.7035 -1.0668 11.7961 27 6 3.5136 1.8477 3.2284 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0275 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.4037 1.1591 -3.0161 34 1 1.5452 3.7146 3.1969 35 1 0.1996 2.6492 2.7259 36 1 0.6349 1.2359 4.7285 37 1 0.2722 2.9191 5.1818 38 1 2.2489 1.9644 6.4201 39 1 2.6591 3.4045 5.4530 40 1 4.0862 1.2688 7.3130 41 1 2.8379 0.0595 6.9289 42 1 4.5982 -1.6617 6.6305 43 1 5.8460 -0.4519 7.0147 44 1 6.7758 -3.3718 9.0579 45 1 3.9254 2.8479 3.0939 46 1 4.1941 1.1117 2.8001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290916258.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:20 Heat of formation + Delta-G solvation = 8.578628 kcal Electronic energy + Delta-G solvation = -27266.641868 eV Core-core repulsion = 23510.575613 eV Total energy + Delta-G solvation = -3756.066255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.22133 -41.23098 -38.67364 -36.92614 -35.60888 -34.76206 -33.01309 -32.80100 -31.68553 -30.59184 -28.07032 -26.23028 -25.64615 -24.96044 -23.78436 -23.40502 -22.46478 -21.07289 -19.80810 -19.14860 -18.83707 -18.15459 -17.72214 -17.32967 -16.71745 -16.64726 -16.39814 -16.09330 -15.95385 -15.43922 -15.07731 -15.04907 -14.61380 -14.50001 -14.20797 -14.16493 -13.78139 -13.63101 -13.41849 -13.21492 -12.82028 -12.79388 -12.69317 -12.51198 -12.46749 -12.29107 -12.01026 -11.98647 -11.91162 -11.80493 -11.61386 -11.50710 -11.34221 -11.29194 -10.72382 -10.55993 -10.41764 -9.69154 -9.48042 -8.17235 -6.31084 -0.15793 0.20099 1.15733 1.41506 1.43357 1.45845 1.56727 1.64088 1.70331 1.98365 2.43895 3.02117 3.16135 3.38245 3.51720 3.55975 3.88552 3.92890 3.94729 3.99730 4.06086 4.16276 4.23478 4.28843 4.44648 4.49714 4.52851 4.55033 4.63909 4.70994 4.77059 4.79879 4.90766 4.96326 5.00122 5.06494 5.15736 5.16948 5.38948 5.46293 5.51474 5.58985 5.63376 5.85941 6.18126 6.36594 6.87661 7.22121 7.34609 7.39399 8.95477 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020588 B = 0.002265 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.681220 B =12357.503174 C =12754.097534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.085 3.915 3 N -0.451 5.451 4 C 0.138 3.862 5 S 0.009 5.991 6 N -0.280 5.280 7 N -0.314 5.314 8 C 0.211 3.789 9 C -0.005 4.005 10 H 0.103 0.897 11 C -0.100 4.100 12 C -0.124 4.124 13 C 0.093 3.907 14 N -0.609 5.609 15 C 0.513 3.487 16 O -0.591 6.591 17 C -0.114 4.114 18 C 0.042 3.958 19 C -0.540 4.540 20 H 0.079 0.921 21 C -0.008 4.008 22 N -0.939 5.939 23 Si 0.973 3.027 24 H -0.270 1.270 25 H -0.289 1.289 26 H -0.254 1.254 27 C 0.127 3.873 28 H 0.066 0.934 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.119 0.881 32 H 0.106 0.894 33 H 0.121 0.879 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.112 0.888 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.109 0.891 42 H -0.017 1.017 43 H -0.022 1.022 44 H 0.262 0.738 45 H 0.075 0.925 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.665 9.153 -18.577 27.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.036 4.036 3 N -0.143 5.143 4 C -0.238 4.238 5 S 0.158 5.842 6 N -0.125 5.125 7 N -0.156 5.156 8 C -0.059 4.059 9 C -0.027 4.027 10 H 0.121 0.879 11 C -0.139 4.139 12 C -0.162 4.162 13 C -0.028 4.028 14 N -0.342 5.342 15 C 0.304 3.696 16 O -0.471 6.471 17 C -0.153 4.153 18 C 0.005 3.995 19 C -0.578 4.578 20 H 0.097 0.903 21 C -0.205 4.205 22 N -0.579 5.579 23 Si 0.797 3.203 24 H -0.196 1.196 25 H -0.215 1.215 26 H -0.178 1.178 27 C 0.003 3.997 28 H 0.085 0.915 29 H 0.124 0.876 30 H 0.079 0.921 31 H 0.137 0.863 32 H 0.124 0.876 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.130 0.870 38 H 0.121 0.879 39 H 0.104 0.896 40 H 0.121 0.879 41 H 0.128 0.872 42 H 0.001 0.999 43 H -0.003 1.003 44 H 0.071 0.929 45 H 0.093 0.907 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.932 9.917 -19.760 28.467 hybrid contribution 1.333 -1.809 1.253 2.573 sum -16.599 8.108 -18.507 26.149 Atomic orbital electron populations 1.22128 0.91381 1.05220 1.03153 1.22439 0.97909 0.76540 1.06749 1.47419 1.47162 1.14747 1.04939 1.26339 1.09363 0.92087 0.95966 1.86892 1.22244 1.79297 0.95749 1.74712 1.16307 1.18097 1.03335 1.74020 1.19471 1.18896 1.03191 1.25155 0.99788 0.88507 0.92481 1.20061 0.97505 1.02167 0.82964 0.87903 1.21523 0.98007 0.98570 0.95775 1.21919 0.96546 1.03617 0.94114 1.22183 0.87563 0.96480 0.96573 1.48200 1.40008 1.36976 1.09052 1.21471 0.79233 0.78014 0.90931 1.90644 1.37409 1.50691 1.68357 1.21642 1.02812 1.01388 0.89481 1.18698 0.93196 0.92547 0.95083 1.21714 1.21674 1.19357 0.95020 0.90337 1.26141 0.94700 0.95808 1.03866 1.70183 1.25223 1.23990 1.38537 0.85333 0.77406 0.79140 0.78451 1.19584 1.21473 1.17791 1.21319 0.95711 1.01748 0.80950 0.91490 0.87611 0.92098 0.86256 0.87624 0.91520 0.90683 0.90052 0.90840 0.86954 0.87861 0.89600 0.87874 0.87250 0.99886 1.00341 0.92933 0.90685 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 10.24 71.98 0.74 -0.53 16 2 C 0.08 0.95 6.47 86.38 0.56 1.51 16 3 N -0.45 -8.51 2.81 -513.12 -1.44 -9.95 16 4 C 0.14 2.98 8.37 179.55 1.50 4.48 16 5 S 0.01 0.13 25.78 -56.49 -1.46 -1.33 16 6 N -0.28 -7.95 12.23 -56.86 -0.70 -8.64 16 7 N -0.31 -8.85 12.18 -49.53 -0.60 -9.46 16 8 C 0.21 4.75 6.58 137.63 0.91 5.66 16 9 C 0.00 -0.10 2.70 -11.46 -0.03 -0.13 16 10 H 0.10 1.79 6.95 -2.39 -0.02 1.78 16 11 C -0.10 -1.47 5.15 30.62 0.16 -1.32 16 12 C -0.12 -1.53 6.08 30.67 0.19 -1.35 16 13 C 0.09 1.66 6.34 86.36 0.55 2.20 16 14 N -0.61 -16.65 2.97 -818.89 -2.43 -19.08 16 15 C 0.51 19.64 7.70 87.66 0.67 20.32 16 16 O -0.59 -28.95 15.39 -3.05 -0.05 -29.00 16 17 C -0.11 -4.41 3.99 29.85 0.12 -4.29 16 18 C 0.04 2.32 4.26 29.85 0.13 2.45 16 19 C -0.54 -30.06 9.11 25.60 0.23 -29.83 16 20 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 21 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 22 N -0.94 -59.19 13.29 21.45 0.28 -58.91 16 23 Si 0.97 43.55 29.54 68.60 2.03 45.57 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 26 H -0.25 -10.51 7.11 99.48 0.71 -9.80 16 27 C 0.13 3.35 5.70 86.36 0.49 3.84 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.12 0.95 7.86 -2.39 -0.02 0.93 16 32 H 0.11 1.16 7.24 -2.39 -0.02 1.15 16 33 H 0.12 1.31 9.55 73.80 0.70 2.02 16 34 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.10 1.74 5.93 -2.38 -0.01 1.72 16 39 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.10 3.53 7.94 -2.39 -0.02 3.51 16 41 H 0.11 3.59 7.69 -2.39 -0.02 3.57 16 42 H -0.02 -1.07 8.10 -2.39 -0.02 -1.09 16 43 H -0.02 -1.38 8.10 -2.39 -0.02 -1.40 16 44 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 45 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.06 2.01 7.00 -2.39 -0.02 1.99 16 Total: -1.00 -83.16 389.35 4.00 -79.16 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: 1.70 Total: 8.61 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: 6.67 Total: 3.03 kcal Atomic # 7 Polarization: -101.15 SS G_CDS: -4.89 Total: -106.04 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -0.05 Total: -29.00 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -1.46 Total: -1.33 kcal Total: -83.16 4.00 -79.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290916258.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.736 kcal (2) G-P(sol) polarization free energy of solvation -83.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds