Wall clock time and date at job start Tue Mar 31 2020 21:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.46709 * 2 1 4 4 C 1.36545 * 127.14058 * 90.02236 * 3 2 1 5 5 S 1.76195 * 126.48344 * 0.02562 * 4 3 2 6 6 N 1.31280 * 107.03099 * 179.73555 * 4 3 2 7 7 N 1.28525 * 109.85761 * 0.27153 * 6 4 3 8 8 C 1.30300 * 110.07877 * 359.97438 * 7 6 4 9 9 C 1.50704 * 126.34227 * 180.02562 * 8 7 6 10 10 H 1.09001 * 109.49455 * 180.02562 * 9 8 7 11 11 C 1.53035 * 109.49582 * 300.14184 * 9 8 7 12 12 C 1.53044 * 109.53603 * 181.31625 * 11 9 8 13 13 C 1.53192 * 109.31145 * 298.63403 * 12 11 9 14 14 N 1.46929 * 108.77394 * 54.63760 * 13 12 11 15 15 C 1.34777 * 120.63022 * 126.37046 * 14 13 12 16 16 O 1.21288 * 119.99537 * 180.02562 * 15 14 13 17 17 C 1.50698 * 120.00109 * 0.02562 * 15 14 13 18 18 C 1.53001 * 109.47096 * 180.02562 * 17 15 14 19 19 C 1.50699 * 109.47420 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99674 * 0.02562 * 19 18 17 21 21 C 1.37869 * 120.00333 * 179.97438 * 19 18 17 22 22 N 1.31518 * 120.00170 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00054 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47131 * 90.00430 * 23 21 19 25 25 H 1.48505 * 109.47198 * 210.00197 * 23 21 19 26 26 H 1.48495 * 109.47431 * 330.00811 * 23 21 19 27 27 C 1.46927 * 118.73790 * 306.38717 * 14 13 12 28 28 H 1.09000 * 109.47556 * 299.99365 * 1 2 3 29 29 H 1.08999 * 109.47199 * 60.00186 * 1 2 3 30 30 H 1.09006 * 109.46965 * 179.97438 * 1 2 3 31 31 H 1.08988 * 109.47299 * 240.00303 * 2 1 3 32 32 H 1.08999 * 109.47199 * 119.99814 * 2 1 3 33 33 H 1.41005 * 99.99931 * 269.70773 * 5 4 3 34 34 H 1.09002 * 109.46312 * 301.33679 * 11 9 8 35 35 H 1.09004 * 109.46514 * 61.29838 * 11 9 8 36 36 H 1.08998 * 109.49962 * 178.68566 * 12 11 9 37 37 H 1.09004 * 109.52483 * 58.60131 * 12 11 9 38 38 H 1.08998 * 109.58632 * 294.84854 * 13 12 11 39 39 H 1.09001 * 109.58902 * 174.41944 * 13 12 11 40 40 H 1.08991 * 109.47402 * 300.00090 * 17 15 14 41 41 H 1.09002 * 109.47171 * 60.00343 * 17 15 14 42 42 H 1.09004 * 109.46872 * 300.00110 * 18 17 15 43 43 H 1.09001 * 109.47409 * 59.99837 * 18 17 15 44 44 H 0.96994 * 119.99917 * 179.97438 * 22 21 19 45 45 H 1.09005 * 109.58472 * 293.82622 * 27 14 13 46 46 H 1.08994 * 109.58351 * 173.39829 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2934 2.1584 1.0885 5 16 2.1291 1.6896 2.7789 6 7 2.7095 3.3188 0.6371 7 7 2.7052 3.3144 -0.6481 8 6 2.2902 2.1610 -1.0901 9 6 2.1432 1.7586 -2.5349 10 1 1.7747 0.7343 -2.5916 11 6 1.1536 2.6977 -3.2285 12 6 0.9786 2.2698 -4.6874 13 6 2.3261 2.3685 -5.4094 14 7 3.3200 1.5829 -4.6652 15 6 4.0490 0.6337 -5.2850 16 8 4.8660 -0.0083 -4.6594 17 6 3.8489 0.3701 -6.7552 18 6 4.7922 -0.7469 -7.2061 19 6 4.5926 -1.0101 -8.6764 20 1 3.8660 -0.4376 -9.2337 21 6 5.3384 -1.9811 -9.3104 22 7 6.2237 -2.6780 -8.6320 23 14 5.0905 -2.3077 -11.1329 24 1 6.0055 -1.4425 -11.9198 25 1 5.3846 -3.7338 -11.4247 26 1 3.6843 -2.0065 -11.5030 27 6 3.5039 1.8515 -3.2325 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 0.7991 2.0932 3.0168 34 1 0.1912 2.6519 -2.7187 35 1 1.5351 3.7181 -3.1927 36 1 0.2562 2.9246 -5.1745 37 1 0.6203 1.2410 -4.7249 38 1 2.6421 3.4108 -5.4526 39 1 2.2292 1.9717 -6.4200 40 1 2.8170 0.0676 -6.9330 41 1 4.0639 1.2775 -7.3196 42 1 5.8243 -0.4448 -7.0282 43 1 4.5769 -1.6543 -6.6417 44 1 6.7480 -3.3613 -9.0780 45 1 3.9158 2.8517 -3.0982 46 1 4.1839 1.1137 -2.8068 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290916260.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:24 Heat of formation + Delta-G solvation = 8.842173 kcal Electronic energy + Delta-G solvation = -27267.522525 eV Core-core repulsion = 23511.467697 eV Total energy + Delta-G solvation = -3756.054827 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.21871 -41.22131 -38.66875 -36.93482 -35.60056 -34.75836 -33.00777 -32.79800 -31.71543 -30.58960 -28.06466 -26.22728 -25.66551 -24.97073 -23.76462 -23.39977 -22.45429 -21.07648 -19.80191 -19.27985 -18.83331 -17.86184 -17.68183 -17.47439 -16.80145 -16.70348 -16.42394 -16.05352 -15.92542 -15.37521 -15.08911 -15.03169 -14.61655 -14.51670 -14.25687 -14.17685 -13.76869 -13.58473 -13.44803 -13.21424 -12.90990 -12.81166 -12.71756 -12.49983 -12.45240 -12.28165 -11.99584 -11.98506 -11.90751 -11.78675 -11.63419 -11.49950 -11.33883 -11.28249 -10.71656 -10.55341 -10.41266 -9.68458 -9.47893 -8.16382 -6.30275 -0.13927 0.17470 1.21201 1.36802 1.43868 1.46334 1.57109 1.67028 1.72227 1.98934 2.44508 3.02088 3.16931 3.39063 3.52301 3.56402 3.86953 3.91122 3.93965 3.99762 4.05622 4.16633 4.23457 4.27980 4.43646 4.50061 4.51349 4.55066 4.63100 4.68850 4.76909 4.79114 4.88603 4.96179 4.98635 5.03091 5.09031 5.16371 5.38043 5.46731 5.52012 5.59447 5.64349 5.86906 6.18933 6.37560 6.88483 7.23405 7.34854 7.40163 8.96356 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020760 B = 0.002261 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.404049 B =12378.770875 C =12765.801461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.082 3.918 3 N -0.451 5.451 4 C 0.139 3.861 5 S 0.003 5.997 6 N -0.281 5.281 7 N -0.314 5.314 8 C 0.211 3.789 9 C -0.005 4.005 10 H 0.103 0.897 11 C -0.100 4.100 12 C -0.124 4.124 13 C 0.093 3.907 14 N -0.609 5.609 15 C 0.512 3.488 16 O -0.590 6.590 17 C -0.114 4.114 18 C 0.042 3.958 19 C -0.540 4.540 20 H 0.078 0.922 21 C -0.008 4.008 22 N -0.939 5.939 23 Si 0.973 3.027 24 H -0.274 1.274 25 H -0.288 1.288 26 H -0.253 1.253 27 C 0.127 3.873 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.112 0.888 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.103 0.897 42 H -0.022 1.022 43 H -0.017 1.017 44 H 0.262 0.738 45 H 0.075 0.925 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.140 9.645 18.655 29.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.039 4.039 3 N -0.142 5.142 4 C -0.237 4.237 5 S 0.152 5.848 6 N -0.125 5.125 7 N -0.156 5.156 8 C -0.060 4.060 9 C -0.027 4.027 10 H 0.121 0.879 11 C -0.138 4.138 12 C -0.162 4.162 13 C -0.028 4.028 14 N -0.343 5.343 15 C 0.303 3.697 16 O -0.470 6.470 17 C -0.153 4.153 18 C 0.005 3.995 19 C -0.578 4.578 20 H 0.097 0.903 21 C -0.205 4.205 22 N -0.579 5.579 23 Si 0.797 3.203 24 H -0.199 1.199 25 H -0.213 1.213 26 H -0.176 1.176 27 C 0.002 3.998 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.142 0.858 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.130 0.870 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.121 0.879 40 H 0.127 0.873 41 H 0.121 0.879 42 H -0.003 1.003 43 H 0.001 0.999 44 H 0.071 0.929 45 H 0.093 0.907 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.961 10.239 19.839 29.290 hybrid contribution -0.391 -1.165 -1.268 1.766 sum -19.352 9.074 18.571 28.315 Atomic orbital electron populations 1.22131 0.91636 1.05329 1.02763 1.22473 0.97484 0.76703 1.07259 1.47405 1.47111 1.14814 1.04919 1.26324 1.09422 0.91992 0.95939 1.87026 1.22773 1.79189 0.95811 1.74709 1.16144 1.18267 1.03335 1.74017 1.19329 1.19057 1.03194 1.25163 0.99951 0.88345 0.92493 1.20061 0.97537 1.02144 0.82956 0.87906 1.21518 0.97901 0.98585 0.95811 1.21920 0.96588 1.03608 0.94088 1.22176 0.87507 0.96471 0.96636 1.48202 1.39947 1.37035 1.09080 1.21473 0.79273 0.78029 0.90902 1.90650 1.37283 1.50569 1.68501 1.21641 1.02794 1.01387 0.89485 1.18699 0.93209 0.92559 0.95072 1.21712 1.21669 1.19357 0.95026 0.90348 1.26139 0.94739 0.95790 1.03856 1.70182 1.25189 1.24039 1.38492 0.85335 0.79433 0.77069 0.78495 1.19910 1.21340 1.17617 1.21329 0.95736 1.01795 0.80909 0.92149 0.92006 0.87434 0.87513 0.85771 0.90897 0.90134 0.90688 0.86986 0.90845 0.89611 0.87867 0.87282 0.87871 1.00346 0.99854 0.92931 0.90665 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 10.24 71.98 0.74 -0.39 16 2 C 0.08 0.91 6.47 86.38 0.56 1.47 16 3 N -0.45 -8.50 2.81 -513.13 -1.44 -9.95 16 4 C 0.14 3.00 8.37 179.55 1.50 4.50 16 5 S 0.00 0.04 25.77 -56.49 -1.46 -1.42 16 6 N -0.28 -7.96 12.23 -56.85 -0.70 -8.65 16 7 N -0.31 -8.86 12.17 -49.52 -0.60 -9.47 16 8 C 0.21 4.75 6.58 137.63 0.91 5.65 16 9 C 0.00 -0.10 2.70 -11.46 -0.03 -0.13 16 10 H 0.10 1.79 6.95 -2.39 -0.02 1.77 16 11 C -0.10 -1.44 5.15 30.62 0.16 -1.29 16 12 C -0.12 -1.52 6.08 30.67 0.19 -1.34 16 13 C 0.09 1.66 6.34 86.36 0.55 2.21 16 14 N -0.61 -16.72 2.97 -818.90 -2.43 -19.15 16 15 C 0.51 19.71 7.70 87.66 0.67 20.38 16 16 O -0.59 -29.05 15.40 -3.05 -0.05 -29.09 16 17 C -0.11 -4.41 3.99 29.85 0.12 -4.29 16 18 C 0.04 2.32 4.26 29.85 0.13 2.45 16 19 C -0.54 -30.10 9.11 25.60 0.23 -29.87 16 20 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 21 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 22 N -0.94 -59.27 13.29 21.44 0.28 -58.99 16 23 Si 0.97 43.61 29.54 68.60 2.03 45.64 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 26 H -0.25 -10.37 7.11 99.48 0.71 -9.67 16 27 C 0.13 3.36 5.70 86.36 0.49 3.86 16 28 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.11 0.35 8.14 -2.38 -0.02 0.34 16 31 H 0.11 1.19 7.24 -2.39 -0.02 1.18 16 32 H 0.12 1.05 7.86 -2.39 -0.02 1.03 16 33 H 0.13 1.11 9.55 73.80 0.70 1.82 16 34 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 36 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.07 0.92 8.14 -2.38 -0.02 0.91 16 38 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.10 1.74 5.93 -2.39 -0.01 1.72 16 40 H 0.11 3.59 7.69 -2.39 -0.02 3.57 16 41 H 0.10 3.54 7.94 -2.39 -0.02 3.52 16 42 H -0.02 -1.38 8.10 -2.38 -0.02 -1.40 16 43 H -0.02 -1.05 8.10 -2.39 -0.02 -1.07 16 44 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 45 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 46 H 0.06 2.05 7.00 -2.39 -0.02 2.04 16 Total: -1.00 -83.62 389.35 4.00 -79.62 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: 1.70 Total: 8.24 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 6.67 Total: 3.22 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -4.89 Total: -106.21 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.05 Total: -29.09 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -1.46 Total: -1.42 kcal Total: -83.62 4.00 -79.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290916260.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.463 kcal (2) G-P(sol) polarization free energy of solvation -83.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds