Wall clock time and date at job start Tue Mar 31 2020 21:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.46709 * 2 1 4 4 C 1.36545 * 127.14058 * 90.02236 * 3 2 1 5 5 S 1.76195 * 126.48344 * 0.02562 * 4 3 2 6 6 N 1.31280 * 107.03099 * 179.73555 * 4 3 2 7 7 N 1.28525 * 109.85761 * 0.27153 * 6 4 3 8 8 C 1.30300 * 110.07877 * 359.97438 * 7 6 4 9 9 C 1.50704 * 126.34227 * 180.02562 * 8 7 6 10 10 C 1.53043 * 109.45669 * 60.09717 * 9 8 7 11 11 C 1.53194 * 109.30866 * 178.61591 * 10 9 8 12 12 N 1.46926 * 108.77898 * 54.63300 * 11 10 9 13 13 C 1.34768 * 120.62973 * 126.36664 * 12 11 10 14 14 O 1.21284 * 120.00285 * 180.02562 * 13 12 11 15 15 C 1.50700 * 120.00088 * 0.02719 * 13 12 11 16 16 C 1.53005 * 109.47350 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.47097 * 179.97438 * 16 15 13 18 18 H 1.08003 * 120.00310 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99897 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00024 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99733 * 0.02562 * 19 17 16 22 22 H 1.48508 * 109.47166 * 90.00168 * 21 19 17 23 23 H 1.48502 * 109.47124 * 209.99596 * 21 19 17 24 24 H 1.48492 * 109.47584 * 329.99677 * 21 19 17 25 25 C 1.46921 * 118.73486 * 306.39374 * 12 11 10 26 26 C 1.53042 * 109.45913 * 300.02976 * 9 8 7 27 27 H 1.08999 * 109.47199 * 60.00186 * 1 2 3 28 28 H 1.09006 * 109.46965 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47556 * 299.99365 * 1 2 3 30 30 H 1.08988 * 109.47299 * 240.00303 * 2 1 3 31 31 H 1.08999 * 109.47199 * 119.99814 * 2 1 3 32 32 H 1.41005 * 99.99931 * 269.70773 * 5 4 3 33 33 H 1.08996 * 109.45914 * 180.02562 * 9 8 7 34 34 H 1.08993 * 109.49517 * 298.56397 * 10 9 8 35 35 H 1.09002 * 109.49576 * 58.66239 * 10 9 8 36 36 H 1.09006 * 109.58231 * 294.84238 * 11 10 9 37 37 H 1.09001 * 109.58546 * 174.42682 * 11 10 9 38 38 H 1.09001 * 109.47099 * 299.99551 * 15 13 12 39 39 H 1.09007 * 109.47314 * 59.99919 * 15 13 12 40 40 H 1.08994 * 109.47390 * 300.00348 * 16 15 13 41 41 H 1.09002 * 109.46620 * 60.00460 * 16 15 13 42 42 H 0.97003 * 119.99998 * 180.02562 * 20 19 17 43 43 H 1.08995 * 109.58758 * 293.81465 * 25 12 11 44 44 H 1.09008 * 109.58339 * 173.39516 * 25 12 11 45 45 H 1.08996 * 109.49716 * 301.33638 * 26 9 8 46 46 H 1.08993 * 109.49891 * 61.43409 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2934 2.1584 1.0885 5 16 2.1291 1.6896 2.7789 6 7 2.7095 3.3188 0.6371 7 7 2.7052 3.3144 -0.6481 8 6 2.2902 2.1610 -1.0901 9 6 2.1432 1.7586 -2.5349 10 6 3.5035 1.8490 -3.2302 11 6 3.3570 1.4062 -4.6895 12 7 2.3010 2.2076 -5.3231 13 6 2.5414 2.8792 -6.4665 14 8 1.6615 3.5376 -6.9796 15 6 3.9036 2.8120 -7.1077 16 6 3.9088 3.6560 -8.3839 17 6 5.2711 3.5893 -9.0247 18 1 6.0548 3.0033 -8.5677 19 6 5.5168 4.2757 -10.1950 20 7 6.7056 4.2171 -10.7545 21 14 4.1611 5.2887 -10.9858 22 1 4.2054 6.6750 -10.4551 23 1 4.3577 5.3156 -12.4575 24 1 2.8427 4.6810 -10.6736 25 6 0.9782 2.2632 -4.6861 26 6 1.1513 2.6965 -3.2270 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.8934 -0.5137 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 0.7991 2.0932 3.0168 33 1 1.7747 0.7344 -2.5909 34 1 3.8617 2.8778 -3.1964 35 1 4.2156 1.1984 -2.7223 36 1 3.0864 0.3509 -4.7256 37 1 4.2991 1.5621 -5.2150 38 1 4.6510 3.1972 -6.4140 39 1 4.1376 1.7768 -7.3562 40 1 3.1614 3.2706 -9.0774 41 1 3.6746 4.6912 -8.1358 42 1 6.8785 4.7003 -11.5777 43 1 0.5136 1.2779 -4.7221 44 1 0.3507 2.9847 -5.2095 45 1 0.1893 2.6492 -2.7168 46 1 1.5317 3.7173 -3.1932 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291738247.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:40 Heat of formation + Delta-G solvation = 34.618737 kcal Electronic energy + Delta-G solvation = -27098.816239 eV Core-core repulsion = 23343.879168 eV Total energy + Delta-G solvation = -3754.937071 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.44132 -40.01889 -37.59717 -36.33546 -33.83026 -33.52886 -31.78436 -31.23115 -30.88168 -30.30411 -26.74461 -25.48776 -24.75103 -23.46340 -23.18841 -22.12185 -21.06417 -20.18239 -18.83181 -18.49419 -17.35130 -17.20200 -16.77380 -16.29028 -15.66507 -15.55237 -15.35243 -15.23511 -14.63181 -14.34999 -14.20618 -13.99400 -13.82577 -13.51634 -13.19745 -13.05115 -12.65855 -12.50718 -12.43463 -12.27483 -12.15820 -11.80428 -11.69789 -11.52041 -11.41168 -11.12086 -11.02820 -10.95110 -10.83446 -10.68155 -10.12418 -10.02073 -9.77138 -9.56569 -9.23308 -9.13580 -8.94880 -8.59445 -8.48609 -6.01508 -4.00126 0.46530 0.89996 1.79406 2.05591 2.46266 3.05041 3.13261 3.39669 3.46112 3.56789 3.69394 3.87157 4.13977 4.17973 4.42859 4.47847 4.52545 4.60189 4.69005 4.77597 4.80695 4.92565 5.01714 5.05987 5.18364 5.28124 5.28802 5.34067 5.38947 5.44966 5.46582 5.52629 5.59314 5.82834 5.86614 6.04668 6.05799 6.09495 6.19400 6.58023 6.70900 7.37920 7.44626 7.58020 7.80659 8.19085 8.49637 8.60613 9.01361 9.61670 11.11261 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025107 B = 0.002152 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.971185 B =13010.650913 C =13359.541720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.094 3.906 3 N -0.459 5.459 4 C 0.136 3.864 5 S -0.009 6.009 6 N -0.236 5.236 7 N -0.281 5.281 8 C 0.212 3.788 9 C 0.001 3.999 10 C -0.126 4.126 11 C 0.111 3.889 12 N -0.624 5.624 13 C 0.515 3.485 14 O -0.538 6.538 15 C -0.121 4.121 16 C 0.001 3.999 17 C -0.524 4.524 18 H 0.073 0.927 19 C 0.069 3.931 20 N -0.903 5.903 21 Si 0.877 3.123 22 H -0.276 1.276 23 H -0.289 1.289 24 H -0.261 1.261 25 C 0.114 3.886 26 C -0.122 4.122 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.059 0.941 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.023 0.977 41 H 0.019 0.981 42 H 0.263 0.737 43 H 0.063 0.937 44 H 0.097 0.903 45 H 0.071 0.929 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.795 -14.539 27.962 34.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.029 4.029 3 N -0.152 5.152 4 C -0.239 4.239 5 S 0.141 5.859 6 N -0.081 5.081 7 N -0.123 5.123 8 C -0.056 4.056 9 C -0.020 4.020 10 C -0.165 4.165 11 C -0.013 4.013 12 N -0.360 5.360 13 C 0.306 3.694 14 O -0.414 6.414 15 C -0.161 4.161 16 C -0.037 4.037 17 C -0.562 4.562 18 H 0.091 0.909 19 C -0.133 4.133 20 N -0.542 5.542 21 Si 0.704 3.296 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.186 1.186 25 C -0.009 4.009 26 C -0.161 4.161 27 H 0.085 0.915 28 H 0.105 0.895 29 H 0.078 0.922 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.067 0.933 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.119 0.881 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.041 0.959 41 H 0.037 0.963 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.115 0.885 45 H 0.090 0.910 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.521 -13.043 28.389 34.042 hybrid contribution -1.824 -0.280 -1.016 2.107 sum -15.344 -13.323 27.373 34.092 Atomic orbital electron populations 1.22166 0.93395 1.04009 1.03165 1.22079 0.96112 0.78592 1.06110 1.47199 1.48277 1.13944 1.05741 1.25856 1.11123 0.92580 0.94329 1.87030 1.21070 1.79527 0.98311 1.74839 1.13909 1.16180 1.03137 1.74192 1.18039 1.17384 1.02670 1.25293 0.99866 0.88513 0.91961 1.19755 0.98576 1.00264 0.83425 1.21999 0.94748 1.04484 0.95301 1.21712 0.92572 0.94708 0.92269 1.48265 1.11923 1.50546 1.25307 1.21565 0.91647 0.77129 0.79101 1.90645 1.47489 1.40822 1.62452 1.21700 0.91361 1.03197 0.99862 1.19381 0.97764 0.95031 0.91507 1.21104 0.96050 1.30859 1.08197 0.90928 1.24972 0.95366 0.96135 0.96785 1.69912 1.21302 1.43134 1.19878 0.86801 0.83512 0.81114 0.78158 1.20218 1.21478 1.18553 1.21461 0.85863 1.01940 0.91672 1.21950 0.98317 1.00450 0.95387 0.91479 0.89507 0.92209 0.87840 0.87290 0.93325 0.89221 0.89496 0.90448 0.91382 0.88107 0.89515 0.89610 0.95862 0.96264 0.92734 0.91877 0.88480 0.91024 0.89735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.48 10.24 37.16 0.38 -0.09 16 2 C 0.09 0.34 6.47 -4.04 -0.03 0.32 16 3 N -0.46 -3.63 2.81 -113.54 -0.32 -3.95 16 4 C 0.14 1.34 8.37 -88.34 -0.74 0.60 16 5 S -0.01 -0.06 25.77 -107.50 -2.77 -2.83 16 6 N -0.24 -3.19 12.23 30.68 0.38 -2.82 16 7 N -0.28 -3.81 12.17 33.00 0.40 -3.40 16 8 C 0.21 2.10 6.58 -153.99 -1.01 1.09 16 9 C 0.00 0.01 2.52 -91.73 -0.23 -0.22 16 10 C -0.13 -1.11 5.34 -26.61 -0.14 -1.25 16 11 C 0.11 1.06 6.34 -3.71 -0.02 1.03 16 12 N -0.62 -8.12 2.97 -172.77 -0.51 -8.63 16 13 C 0.51 9.27 7.70 -10.99 -0.08 9.18 16 14 O -0.54 -11.79 15.40 5.55 0.09 -11.71 16 15 C -0.12 -2.32 3.99 -27.88 -0.11 -2.44 16 16 C 0.00 0.03 3.33 -27.88 -0.09 -0.07 16 17 C -0.52 -14.97 9.66 -34.44 -0.33 -15.30 16 18 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 19 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 20 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 21 Si 0.88 22.71 27.47 -169.99 -4.67 18.04 16 22 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.26 -6.72 6.54 56.52 0.37 -6.35 16 25 C 0.11 1.22 6.43 -3.71 -0.02 1.20 16 26 C -0.12 -1.13 5.34 -26.61 -0.14 -1.28 16 27 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.10 0.22 7.24 -51.94 -0.38 -0.16 16 31 H 0.11 0.27 7.86 -51.93 -0.41 -0.14 16 32 H 0.10 0.50 9.55 96.90 0.93 1.42 16 33 H 0.09 0.47 6.95 -51.93 -0.36 0.11 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.10 1.01 5.93 -51.93 -0.31 0.70 16 38 H 0.09 1.55 7.69 -51.93 -0.40 1.15 16 39 H 0.09 1.49 7.94 -51.93 -0.41 1.08 16 40 H 0.02 0.60 7.16 -51.93 -0.37 0.23 16 41 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 42 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.10 1.26 7.01 -51.92 -0.36 0.90 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 385.74 15.07 5.81 5.81 Total: -1.00 -37.26 385.74 -9.36 -46.62 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: -5.86 Total: -4.58 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -2.68 Total: -5.28 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: 0.72 Total: -46.07 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.67 Total: 18.04 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -2.77 Total: -2.83 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.26 -9.36 -46.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291738247.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.238 kcal (2) G-P(sol) polarization free energy of solvation -37.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds