Wall clock time and date at job start Tue Mar 31 2020 21:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.46709 * 2 1 4 4 C 1.36545 * 127.14058 * 90.02236 * 3 2 1 5 5 S 1.76195 * 126.48344 * 0.02562 * 4 3 2 6 6 N 1.31280 * 107.03099 * 179.73555 * 4 3 2 7 7 N 1.28525 * 109.85761 * 0.27153 * 6 4 3 8 8 C 1.30300 * 110.07877 * 359.97438 * 7 6 4 9 9 C 1.50704 * 126.34227 * 180.02562 * 8 7 6 10 10 C 1.53043 * 109.45669 * 60.09717 * 9 8 7 11 11 C 1.53194 * 109.30866 * 178.61591 * 10 9 8 12 12 N 1.46926 * 108.77898 * 54.63300 * 11 10 9 13 13 C 1.34768 * 120.62973 * 126.36664 * 12 11 10 14 14 O 1.21284 * 120.00285 * 180.02562 * 13 12 11 15 15 C 1.50700 * 120.00088 * 0.02719 * 13 12 11 16 16 C 1.53005 * 109.47350 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.47097 * 179.97438 * 16 15 13 18 18 H 1.08003 * 120.00310 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99897 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00024 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99733 * 0.02562 * 19 17 16 22 22 H 1.48508 * 109.47166 * 90.00168 * 21 19 17 23 23 H 1.48502 * 109.47124 * 209.99596 * 21 19 17 24 24 H 1.48492 * 109.47584 * 329.99677 * 21 19 17 25 25 C 1.46921 * 118.73486 * 306.39374 * 12 11 10 26 26 C 1.53042 * 109.45913 * 300.02976 * 9 8 7 27 27 H 1.08999 * 109.47199 * 60.00186 * 1 2 3 28 28 H 1.09006 * 109.46965 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47556 * 299.99365 * 1 2 3 30 30 H 1.08988 * 109.47299 * 240.00303 * 2 1 3 31 31 H 1.08999 * 109.47199 * 119.99814 * 2 1 3 32 32 H 1.41005 * 99.99931 * 269.70773 * 5 4 3 33 33 H 1.08996 * 109.45914 * 180.02562 * 9 8 7 34 34 H 1.08993 * 109.49517 * 298.56397 * 10 9 8 35 35 H 1.09002 * 109.49576 * 58.66239 * 10 9 8 36 36 H 1.09006 * 109.58231 * 294.84238 * 11 10 9 37 37 H 1.09001 * 109.58546 * 174.42682 * 11 10 9 38 38 H 1.09001 * 109.47099 * 299.99551 * 15 13 12 39 39 H 1.09007 * 109.47314 * 59.99919 * 15 13 12 40 40 H 1.08994 * 109.47390 * 300.00348 * 16 15 13 41 41 H 1.09002 * 109.46620 * 60.00460 * 16 15 13 42 42 H 0.97003 * 119.99998 * 180.02562 * 20 19 17 43 43 H 1.08995 * 109.58758 * 293.81465 * 25 12 11 44 44 H 1.09008 * 109.58339 * 173.39516 * 25 12 11 45 45 H 1.08996 * 109.49716 * 301.33638 * 26 9 8 46 46 H 1.08993 * 109.49891 * 61.43409 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2934 2.1584 1.0885 5 16 2.1291 1.6896 2.7789 6 7 2.7095 3.3188 0.6371 7 7 2.7052 3.3144 -0.6481 8 6 2.2902 2.1610 -1.0901 9 6 2.1432 1.7586 -2.5349 10 6 3.5035 1.8490 -3.2302 11 6 3.3570 1.4062 -4.6895 12 7 2.3010 2.2076 -5.3231 13 6 2.5414 2.8792 -6.4665 14 8 1.6615 3.5376 -6.9796 15 6 3.9036 2.8120 -7.1077 16 6 3.9088 3.6560 -8.3839 17 6 5.2711 3.5893 -9.0247 18 1 6.0548 3.0033 -8.5677 19 6 5.5168 4.2757 -10.1950 20 7 6.7056 4.2171 -10.7545 21 14 4.1611 5.2887 -10.9858 22 1 4.2054 6.6750 -10.4551 23 1 4.3577 5.3156 -12.4575 24 1 2.8427 4.6810 -10.6736 25 6 0.9782 2.2632 -4.6861 26 6 1.1513 2.6965 -3.2270 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.8934 -0.5137 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 0.7991 2.0932 3.0168 33 1 1.7747 0.7344 -2.5909 34 1 3.8617 2.8778 -3.1964 35 1 4.2156 1.1984 -2.7223 36 1 3.0864 0.3509 -4.7256 37 1 4.2991 1.5621 -5.2150 38 1 4.6510 3.1972 -6.4140 39 1 4.1376 1.7768 -7.3562 40 1 3.1614 3.2706 -9.0774 41 1 3.6746 4.6912 -8.1358 42 1 6.8785 4.7003 -11.5777 43 1 0.5136 1.2779 -4.7221 44 1 0.3507 2.9847 -5.2095 45 1 0.1893 2.6492 -2.7168 46 1 1.5317 3.7173 -3.1932 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291738247.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:39 Heat of formation + Delta-G solvation = 10.552692 kcal Electronic energy + Delta-G solvation = -27099.859821 eV Core-core repulsion = 23343.879168 eV Total energy + Delta-G solvation = -3755.980653 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.15091 -41.18429 -38.69781 -36.85421 -35.57997 -34.79804 -33.41383 -32.08739 -31.62969 -31.17540 -28.33500 -26.59964 -25.22125 -24.40178 -23.94282 -23.23838 -22.31451 -21.13492 -19.89808 -19.28276 -19.01137 -17.92165 -17.71652 -17.41983 -16.71386 -16.63664 -16.29898 -16.16825 -15.90349 -15.21749 -15.10702 -15.00137 -14.80228 -14.57729 -14.37769 -14.18132 -13.79392 -13.50151 -13.38078 -13.28102 -12.93564 -12.83658 -12.82139 -12.41421 -12.33116 -12.22453 -12.01385 -11.96408 -11.89649 -11.79811 -11.74354 -11.53516 -11.37596 -11.24673 -10.77559 -10.68416 -10.32179 -9.65706 -9.45086 -8.30907 -6.33286 -0.11307 0.26004 1.24650 1.33128 1.34815 1.49824 1.49946 1.68023 1.76278 2.05843 2.35252 3.04706 3.04784 3.46457 3.59946 3.65145 3.80766 3.96530 3.99214 4.04449 4.08334 4.29842 4.31274 4.34554 4.36832 4.42563 4.47794 4.56243 4.69214 4.71177 4.74203 4.82161 4.83165 4.89347 4.99490 5.06764 5.08813 5.15618 5.33106 5.34422 5.45050 5.61471 5.63732 5.65217 6.24067 6.39108 6.72897 7.24869 7.31951 7.43977 8.84612 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025107 B = 0.002152 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.971185 B =13010.650913 C =13359.541720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.082 3.918 3 N -0.449 5.449 4 C 0.137 3.863 5 S 0.005 5.995 6 N -0.289 5.289 7 N -0.330 5.330 8 C 0.214 3.786 9 C 0.009 3.991 10 C -0.120 4.120 11 C 0.106 3.894 12 N -0.613 5.613 13 C 0.514 3.486 14 O -0.588 6.588 15 C -0.115 4.115 16 C 0.005 3.995 17 C -0.527 4.527 18 H 0.052 0.948 19 C 0.013 3.987 20 N -0.942 5.942 21 Si 0.936 3.064 22 H -0.272 1.272 23 H -0.277 1.277 24 H -0.261 1.261 25 C 0.114 3.886 26 C -0.112 4.112 27 H 0.060 0.940 28 H 0.110 0.890 29 H 0.049 0.951 30 H 0.129 0.871 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.133 0.867 34 H 0.053 0.947 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.011 0.989 41 H 0.003 0.997 42 H 0.267 0.733 43 H 0.102 0.898 44 H 0.070 0.930 45 H 0.090 0.910 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.508 -17.522 29.596 37.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.038 4.038 3 N -0.141 5.141 4 C -0.239 4.239 5 S 0.154 5.846 6 N -0.133 5.133 7 N -0.172 5.172 8 C -0.056 4.056 9 C -0.012 4.012 10 C -0.160 4.160 11 C -0.016 4.016 12 N -0.347 5.347 13 C 0.304 3.696 14 O -0.468 6.468 15 C -0.154 4.154 16 C -0.033 4.033 17 C -0.565 4.565 18 H 0.070 0.930 19 C -0.184 4.184 20 N -0.583 5.583 21 Si 0.761 3.239 22 H -0.197 1.197 23 H -0.202 1.202 24 H -0.185 1.185 25 C -0.008 4.008 26 C -0.152 4.152 27 H 0.079 0.921 28 H 0.129 0.871 29 H 0.068 0.932 30 H 0.147 0.853 31 H 0.141 0.859 32 H 0.085 0.915 33 H 0.151 0.849 34 H 0.072 0.928 35 H 0.117 0.883 36 H 0.128 0.872 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.124 0.876 40 H 0.029 0.971 41 H 0.022 0.978 42 H 0.076 0.924 43 H 0.120 0.880 44 H 0.089 0.911 45 H 0.108 0.892 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -15.231 -16.074 30.074 37.348 hybrid contribution -1.278 0.550 -1.352 1.940 sum -16.509 -15.524 28.722 36.586 Atomic orbital electron populations 1.22173 0.92570 1.05300 1.02379 1.22553 0.96758 0.76355 1.08115 1.47440 1.47170 1.15033 1.04445 1.26306 1.09532 0.92050 0.96049 1.86951 1.22472 1.78916 0.96270 1.74736 1.16449 1.18586 1.03522 1.74071 1.20049 1.19873 1.03174 1.25462 0.99156 0.87992 0.92966 1.19819 0.97591 1.01914 0.81876 1.21920 0.95834 1.03040 0.95173 1.22026 0.91377 0.96205 0.92000 1.48244 1.13735 1.49062 1.23619 1.21208 0.90429 0.77432 0.80499 1.90625 1.48501 1.43282 1.64411 1.21508 0.93017 1.03237 0.97668 1.19229 0.95035 0.95250 0.93804 1.21424 0.97153 1.29815 1.08074 0.92962 1.25790 0.97445 0.97518 0.97679 1.70019 1.23111 1.44503 1.20675 0.85858 0.80633 0.79617 0.77781 1.19710 1.20223 1.18526 1.21634 0.84267 1.03364 0.91582 1.21816 0.99585 0.98918 0.94853 0.92089 0.87119 0.93218 0.85340 0.85885 0.91458 0.84926 0.92797 0.88295 0.87226 0.88712 0.88505 0.87581 0.97069 0.97817 0.92406 0.87951 0.91144 0.89201 0.93278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.29 10.24 71.98 0.74 0.44 16 2 C 0.08 0.27 6.47 86.38 0.56 0.83 16 3 N -0.45 -6.02 2.81 -513.13 -1.44 -7.46 16 4 C 0.14 2.55 8.37 179.55 1.50 4.05 16 5 S 0.00 0.05 25.77 -56.49 -1.46 -1.40 16 6 N -0.29 -7.91 12.23 -56.85 -0.70 -8.60 16 7 N -0.33 -9.07 12.17 -49.52 -0.60 -9.67 16 8 C 0.21 3.90 6.58 137.63 0.91 4.80 16 9 C 0.01 0.11 2.52 -11.51 -0.03 0.09 16 10 C -0.12 -1.84 5.34 30.67 0.16 -1.68 16 11 C 0.11 1.68 6.34 86.36 0.55 2.23 16 12 N -0.61 -14.81 2.97 -818.91 -2.43 -17.24 16 13 C 0.51 18.30 7.70 87.66 0.67 18.97 16 14 O -0.59 -26.16 15.40 -3.04 -0.05 -26.20 16 15 C -0.11 -4.35 3.99 29.85 0.12 -4.23 16 16 C 0.00 0.24 3.33 29.85 0.10 0.34 16 17 C -0.53 -30.57 9.66 25.60 0.25 -30.32 16 18 H 0.05 3.17 7.99 -2.91 -0.02 3.14 16 19 C 0.01 0.80 5.47 84.66 0.46 1.26 16 20 N -0.94 -59.35 13.96 21.45 0.30 -59.05 16 21 Si 0.94 47.42 27.47 68.60 1.88 49.30 16 22 H -0.27 -13.46 7.11 99.48 0.71 -12.75 16 23 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 24 H -0.26 -13.11 6.54 99.48 0.65 -12.46 16 25 C 0.11 2.20 6.43 86.36 0.56 2.75 16 26 C -0.11 -1.91 5.34 30.67 0.16 -1.75 16 27 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 28 H 0.11 -0.30 8.14 -2.38 -0.02 -0.32 16 29 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.13 -0.18 7.24 -2.39 -0.02 -0.20 16 31 H 0.12 0.10 7.86 -2.39 -0.02 0.09 16 32 H 0.12 0.92 9.55 73.80 0.70 1.62 16 33 H 0.13 0.62 6.95 -2.39 -0.02 0.60 16 34 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.09 1.67 5.93 -2.39 -0.01 1.66 16 38 H 0.10 3.44 7.69 -2.39 -0.02 3.42 16 39 H 0.11 3.55 7.94 -2.38 -0.02 3.53 16 40 H 0.01 0.58 7.16 -2.39 -0.02 0.56 16 41 H 0.00 0.18 7.53 -2.39 -0.02 0.16 16 42 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 43 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.07 1.80 7.01 -2.38 -0.02 1.78 16 45 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -86.03 385.74 3.86 -82.18 By element: Atomic # 1 Polarization: -1.27 SS G_CDS: 1.64 Total: 0.37 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: 6.71 Total: -2.21 kcal Atomic # 7 Polarization: -97.15 SS G_CDS: -4.88 Total: -102.03 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.05 Total: -26.20 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 1.88 Total: 49.30 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -1.46 Total: -1.40 kcal Total: -86.03 3.86 -82.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291738247.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.728 kcal (2) G-P(sol) polarization free energy of solvation -86.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds