Wall clock time and date at job start Tue Mar 31 2020 20:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47447 * 2 1 4 4 C 1.50698 * 109.46717 * 239.99414 * 2 1 3 5 5 N 1.29025 * 124.91996 * 284.69689 * 4 2 1 6 6 C 1.31783 * 117.12223 * 179.81638 * 5 4 2 7 7 C 1.33635 * 114.50344 * 0.47338 * 6 5 4 8 8 S 1.70983 * 124.91170 * 105.00754 * 4 2 1 9 9 N 1.46898 * 109.46555 * 119.99936 * 2 1 3 10 10 C 1.46898 * 111.00317 * 294.99325 * 9 2 1 11 11 C 1.53243 * 109.34165 * 172.74605 * 10 9 2 12 12 N 1.47077 * 108.51471 * 53.83582 * 11 10 9 13 13 C 1.34783 * 120.88019 * 128.83862 * 12 11 10 14 14 O 1.21587 * 119.99952 * 354.77079 * 13 12 11 15 15 N 1.34775 * 120.00030 * 174.77393 * 13 12 11 16 16 C 1.46501 * 120.00044 * 184.97308 * 15 13 12 17 17 C 1.53000 * 109.46961 * 179.97438 * 16 15 13 18 18 C 1.50703 * 109.47082 * 180.02562 * 17 16 15 19 19 H 1.08007 * 119.99845 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00476 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99471 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00294 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47358 * 89.99644 * 22 20 18 24 24 H 1.48500 * 109.47112 * 209.99862 * 22 20 18 25 25 H 1.48505 * 109.47132 * 329.99459 * 22 20 18 26 26 C 1.47078 * 118.24152 * 308.80809 * 12 11 10 27 27 C 1.46906 * 110.99751 * 170.69669 * 9 2 1 28 28 H 1.08995 * 109.47447 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46801 * 300.00558 * 1 2 3 30 30 H 1.08998 * 109.46678 * 59.99849 * 1 2 3 31 31 H 1.08004 * 122.74823 * 180.22752 * 6 5 4 32 32 H 1.07999 * 126.03992 * 179.71968 * 7 6 5 33 33 H 1.09002 * 109.48832 * 52.79020 * 10 9 2 34 34 H 1.09001 * 109.51669 * 292.72657 * 10 9 2 35 35 H 1.08995 * 109.62449 * 173.53952 * 11 10 9 36 36 H 1.08993 * 109.63278 * 294.12780 * 11 10 9 37 37 H 0.97002 * 120.00264 * 4.97522 * 15 13 12 38 38 H 1.09000 * 109.47252 * 300.00001 * 16 15 13 39 39 H 1.09003 * 109.46945 * 60.00106 * 16 15 13 40 40 H 1.09000 * 109.47190 * 300.00101 * 17 16 15 41 41 H 1.09003 * 109.47154 * 60.00296 * 17 16 15 42 42 H 0.97003 * 119.99689 * 180.02562 * 21 20 18 43 43 H 1.08998 * 109.63259 * 291.48072 * 26 12 11 44 44 H 1.08999 * 109.62995 * 170.89586 * 26 12 11 45 45 H 1.09002 * 109.48899 * 307.21243 * 27 9 2 46 46 H 1.08995 * 109.49196 * 67.29370 * 27 9 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 7 2.0253 -1.9897 -1.3991 6 6 2.4998 -2.4478 -2.5401 7 6 2.9401 -1.5031 -3.3764 8 16 2.7007 0.0614 -2.6019 9 7 2.0196 -0.6925 1.1995 10 6 1.6487 0.0392 2.4181 11 6 2.0156 -0.8010 3.6460 12 7 3.4358 -1.1715 3.5511 13 6 4.2777 -0.9541 4.5808 14 8 3.8898 -0.3601 5.5683 15 7 5.5497 -1.3950 4.5160 16 6 6.4332 -1.2559 5.6762 17 6 7.8103 -1.8322 5.3405 18 6 8.7190 -1.6896 6.5343 19 1 8.3513 -1.2333 7.4415 20 6 10.0202 -2.1408 6.4680 21 7 10.4681 -2.6961 5.3631 22 14 11.1464 -1.9648 7.9479 23 1 11.0329 -3.1737 8.8029 24 1 12.5499 -1.8146 7.4867 25 1 10.7515 -0.7661 8.7306 26 6 3.9127 -1.7861 2.3029 27 6 3.4711 -0.9072 1.1278 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 2.5339 -3.5007 -2.7780 32 1 3.3677 -1.6691 -4.3542 33 1 0.5755 0.2299 2.4153 34 1 2.1864 0.9868 2.4517 35 1 1.8491 -0.2178 4.5516 36 1 1.4029 -1.7021 3.6695 37 1 5.8801 -1.8045 3.7011 38 1 6.5330 -0.2012 5.9326 39 1 6.0097 -1.7971 6.5224 40 1 7.7102 -2.8869 5.0844 41 1 8.2340 -1.2914 4.4943 42 1 11.3834 -3.0139 5.3166 43 1 3.4823 -2.7819 2.1973 44 1 5.0004 -1.8542 2.3206 45 1 3.7195 -1.4028 0.1893 46 1 3.9837 0.0533 1.1792 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344311847.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:51 Heat of formation + Delta-G solvation = 36.261395 kcal Electronic energy + Delta-G solvation = -26909.092209 eV Core-core repulsion = 23154.226369 eV Total energy + Delta-G solvation = -3754.865840 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.57879 -39.86331 -38.27957 -35.37664 -34.82724 -32.90238 -31.89910 -31.41822 -29.88372 -29.22841 -26.84000 -25.94958 -24.61518 -23.54733 -22.65815 -21.58230 -20.89023 -19.91071 -19.22129 -18.42092 -17.89466 -16.46918 -16.20825 -15.96596 -15.62487 -15.44152 -15.24095 -14.99246 -14.62649 -14.48172 -14.13718 -14.05297 -13.71888 -13.62159 -13.41571 -12.83991 -12.54508 -12.50451 -12.28563 -12.19485 -11.93780 -11.83386 -11.51242 -11.28144 -11.21488 -11.08881 -11.01657 -10.61182 -10.29964 -9.89836 -9.85654 -9.74199 -9.51719 -9.27597 -9.24070 -8.87317 -8.57411 -8.41975 -8.12912 -6.07568 -4.09989 0.32263 0.94908 1.36277 2.50839 2.89423 3.30934 3.36903 3.41468 3.48582 3.60652 3.68814 4.24575 4.41046 4.45645 4.65466 4.72508 4.82433 4.85754 4.88768 5.07280 5.10834 5.13175 5.18757 5.25009 5.29574 5.29800 5.48023 5.54175 5.69591 5.75159 5.78511 5.87003 5.95633 6.27702 6.42720 6.56139 6.62890 6.73123 6.79909 7.03385 7.23513 7.43992 7.57977 7.65347 7.91712 8.27065 8.40200 8.94463 9.01286 9.54604 11.04170 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015708 B = 0.002271 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.132895 B =12327.781732 C =13670.138149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.161 3.839 3 H 0.060 0.940 4 C 0.055 3.945 5 N -0.445 5.445 6 C 0.038 3.962 7 C -0.258 4.258 8 S 0.111 5.889 9 N -0.515 5.515 10 C 0.038 3.962 11 C 0.138 3.862 12 N -0.637 5.637 13 C 0.703 3.297 14 O -0.597 6.597 15 N -0.739 5.739 16 C 0.139 3.861 17 C 0.013 3.987 18 C -0.520 4.520 19 H 0.060 0.940 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.272 1.272 26 C 0.121 3.879 27 C 0.043 3.957 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.177 0.823 32 H 0.177 0.823 33 H 0.091 0.909 34 H 0.041 0.959 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.392 0.608 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.022 0.978 41 H 0.021 0.979 42 H 0.262 0.738 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.848 4.460 -20.527 29.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.049 3.951 3 H 0.078 0.922 4 C -0.224 4.224 5 N -0.159 5.159 6 C -0.113 4.113 7 C -0.397 4.397 8 S 0.365 5.635 9 N -0.241 5.241 10 C -0.090 4.090 11 C 0.014 3.986 12 N -0.377 5.377 13 C 0.405 3.595 14 O -0.476 6.476 15 N -0.394 5.394 16 C 0.017 3.983 17 C -0.024 4.024 18 C -0.558 4.558 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.725 3.275 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 C -0.003 4.003 27 C -0.086 4.086 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.194 0.806 32 H 0.195 0.805 33 H 0.109 0.891 34 H 0.059 0.941 35 H 0.116 0.884 36 H 0.089 0.911 37 H 0.227 0.773 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.040 0.960 41 H 0.039 0.961 42 H 0.071 0.929 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.103 0.897 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -21.157 5.045 -19.671 29.326 hybrid contribution 1.464 -0.415 -0.249 1.542 sum -19.693 4.631 -19.920 28.391 Atomic orbital electron populations 1.21856 0.91837 1.03889 1.02177 1.20178 0.96598 0.93558 0.84793 0.92219 1.26975 1.02574 0.92605 1.00249 1.66259 1.16889 1.11928 1.20780 1.21959 0.99088 1.01631 0.88598 1.27131 1.11480 0.94432 1.06638 1.84143 1.56460 1.11062 1.11851 1.61932 1.13536 1.48157 1.00474 1.22650 1.01483 0.95430 0.89444 1.21454 0.80300 0.99221 0.97609 1.47328 1.09308 1.66350 1.14665 1.15959 0.81232 0.79616 0.82703 1.90867 1.76935 1.47261 1.32532 1.45699 1.10495 1.64680 1.18565 1.21594 0.90533 1.00624 0.85578 1.19320 0.88853 0.96418 0.97833 1.21055 0.96059 1.39779 0.98946 0.92211 1.24998 0.98132 0.95037 0.96161 1.69961 1.16690 1.40332 1.26400 0.86508 0.79740 0.78635 0.82650 1.20555 1.21201 1.19723 1.21625 0.99257 0.96806 0.82617 1.22507 0.87319 0.99266 0.99502 0.90581 0.91172 0.92007 0.80593 0.80525 0.89061 0.94099 0.88413 0.91105 0.77292 0.92765 0.92827 0.95997 0.96061 0.92884 0.90463 0.89895 0.89734 0.94375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.09 37.16 0.34 -0.59 16 2 C 0.16 1.32 2.59 -68.86 -0.18 1.14 16 3 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 4 C 0.05 0.48 4.51 -13.46 -0.06 0.42 16 5 N -0.45 -4.44 9.81 -11.86 -0.12 -4.55 16 6 C 0.04 0.31 11.35 -19.19 -0.22 0.09 16 7 C -0.26 -1.73 11.37 29.12 0.33 -1.40 16 8 S 0.11 0.80 23.18 -107.50 -2.49 -1.69 16 9 N -0.51 -5.01 4.46 -227.73 -1.02 -6.03 16 10 C 0.04 0.36 5.46 -3.70 -0.02 0.34 16 11 C 0.14 1.65 6.61 -3.60 -0.02 1.62 16 12 N -0.64 -9.12 3.01 -178.19 -0.54 -9.65 16 13 C 0.70 13.05 8.31 -86.91 -0.72 12.33 16 14 O -0.60 -13.18 15.80 5.29 0.08 -13.10 16 15 N -0.74 -13.85 5.46 -65.22 -0.36 -14.21 16 16 C 0.14 3.09 5.62 -4.04 -0.02 3.07 16 17 C 0.01 0.34 5.09 -27.88 -0.14 0.19 16 18 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16 19 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 22 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 26 C 0.12 1.44 6.54 -3.60 -0.02 1.42 16 27 C 0.04 0.46 5.32 -3.70 -0.02 0.44 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.39 6.38 -51.93 -0.33 0.06 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.18 1.04 8.06 -52.48 -0.42 0.61 16 32 H 0.18 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.09 0.66 6.13 -51.93 -0.32 0.34 16 34 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.10 1.29 7.04 -51.93 -0.37 0.92 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.39 6.49 6.01 -40.82 -0.25 6.25 16 38 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.08 0.97 5.74 -51.93 -0.30 0.67 16 45 H 0.08 0.91 6.07 -51.93 -0.32 0.60 16 46 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 381.37 15.07 5.75 5.75 Total: -1.00 -33.56 381.37 -11.05 -44.62 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -6.91 Total: 2.19 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -1.17 Total: 5.72 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: -1.29 Total: -60.04 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.08 Total: -13.10 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.49 Total: -1.69 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.56 -11.05 -44.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344311847.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.878 kcal (2) G-P(sol) polarization free energy of solvation -33.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds