Wall clock time and date at job start Tue Mar 31 2020 20:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47447 * 2 1 4 4 C 1.50698 * 109.46717 * 239.99414 * 2 1 3 5 5 N 1.29025 * 124.91996 * 284.69689 * 4 2 1 6 6 C 1.31783 * 117.12223 * 179.81638 * 5 4 2 7 7 C 1.33635 * 114.50344 * 0.47338 * 6 5 4 8 8 S 1.70983 * 124.91170 * 105.00754 * 4 2 1 9 9 N 1.46898 * 109.46555 * 119.99936 * 2 1 3 10 10 C 1.46898 * 111.00317 * 294.99325 * 9 2 1 11 11 C 1.53243 * 109.34165 * 172.74605 * 10 9 2 12 12 N 1.47077 * 108.51471 * 53.83582 * 11 10 9 13 13 C 1.34783 * 120.88019 * 128.83862 * 12 11 10 14 14 O 1.21587 * 119.99952 * 354.77079 * 13 12 11 15 15 N 1.34775 * 120.00030 * 174.77393 * 13 12 11 16 16 C 1.46501 * 120.00044 * 184.97308 * 15 13 12 17 17 C 1.53000 * 109.46961 * 179.97438 * 16 15 13 18 18 C 1.50703 * 109.47082 * 180.02562 * 17 16 15 19 19 H 1.08007 * 119.99845 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00476 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99471 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00294 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47358 * 89.99644 * 22 20 18 24 24 H 1.48500 * 109.47112 * 209.99862 * 22 20 18 25 25 H 1.48505 * 109.47132 * 329.99459 * 22 20 18 26 26 C 1.47078 * 118.24152 * 308.80809 * 12 11 10 27 27 C 1.46906 * 110.99751 * 170.69669 * 9 2 1 28 28 H 1.08995 * 109.47447 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46801 * 300.00558 * 1 2 3 30 30 H 1.08998 * 109.46678 * 59.99849 * 1 2 3 31 31 H 1.08004 * 122.74823 * 180.22752 * 6 5 4 32 32 H 1.07999 * 126.03992 * 179.71968 * 7 6 5 33 33 H 1.09002 * 109.48832 * 52.79020 * 10 9 2 34 34 H 1.09001 * 109.51669 * 292.72657 * 10 9 2 35 35 H 1.08995 * 109.62449 * 173.53952 * 11 10 9 36 36 H 1.08993 * 109.63278 * 294.12780 * 11 10 9 37 37 H 0.97002 * 120.00264 * 4.97522 * 15 13 12 38 38 H 1.09000 * 109.47252 * 300.00001 * 16 15 13 39 39 H 1.09003 * 109.46945 * 60.00106 * 16 15 13 40 40 H 1.09000 * 109.47190 * 300.00101 * 17 16 15 41 41 H 1.09003 * 109.47154 * 60.00296 * 17 16 15 42 42 H 0.97003 * 119.99689 * 180.02562 * 21 20 18 43 43 H 1.08998 * 109.63259 * 291.48072 * 26 12 11 44 44 H 1.08999 * 109.62995 * 170.89586 * 26 12 11 45 45 H 1.09002 * 109.48899 * 307.21243 * 27 9 2 46 46 H 1.08995 * 109.49196 * 67.29370 * 27 9 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 7 2.0253 -1.9897 -1.3991 6 6 2.4998 -2.4478 -2.5401 7 6 2.9401 -1.5031 -3.3764 8 16 2.7007 0.0614 -2.6019 9 7 2.0196 -0.6925 1.1995 10 6 1.6487 0.0392 2.4181 11 6 2.0156 -0.8010 3.6460 12 7 3.4358 -1.1715 3.5511 13 6 4.2777 -0.9541 4.5808 14 8 3.8898 -0.3601 5.5683 15 7 5.5497 -1.3950 4.5160 16 6 6.4332 -1.2559 5.6762 17 6 7.8103 -1.8322 5.3405 18 6 8.7190 -1.6896 6.5343 19 1 8.3513 -1.2333 7.4415 20 6 10.0202 -2.1408 6.4680 21 7 10.4681 -2.6961 5.3631 22 14 11.1464 -1.9648 7.9479 23 1 11.0329 -3.1737 8.8029 24 1 12.5499 -1.8146 7.4867 25 1 10.7515 -0.7661 8.7306 26 6 3.9127 -1.7861 2.3029 27 6 3.4711 -0.9072 1.1278 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 2.5339 -3.5007 -2.7780 32 1 3.3677 -1.6691 -4.3542 33 1 0.5755 0.2299 2.4153 34 1 2.1864 0.9868 2.4517 35 1 1.8491 -0.2178 4.5516 36 1 1.4029 -1.7021 3.6695 37 1 5.8801 -1.8045 3.7011 38 1 6.5330 -0.2012 5.9326 39 1 6.0097 -1.7971 6.5224 40 1 7.7102 -2.8869 5.0844 41 1 8.2340 -1.2914 4.4943 42 1 11.3834 -3.0139 5.3166 43 1 3.4823 -2.7819 2.1973 44 1 5.0004 -1.8542 2.3206 45 1 3.7195 -1.4028 0.1893 46 1 3.9837 0.0533 1.1792 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344311847.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:50 Heat of formation + Delta-G solvation = 13.083019 kcal Electronic energy + Delta-G solvation = -26910.097299 eV Core-core repulsion = 23154.226369 eV Total energy + Delta-G solvation = -3755.870930 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.58637 -40.79046 -39.26630 -36.71696 -36.30477 -34.85316 -32.85266 -32.38389 -31.28691 -30.23320 -27.86102 -26.84300 -26.24131 -24.52427 -23.46422 -23.00171 -22.31525 -20.80827 -20.31849 -19.19637 -18.92418 -18.49858 -17.30130 -16.99581 -16.76895 -16.51265 -16.40975 -15.99461 -15.70585 -15.53719 -15.37488 -15.24098 -15.04783 -14.61923 -14.31399 -14.26231 -13.97537 -13.51191 -13.20135 -13.17159 -12.96559 -12.92282 -12.58206 -12.51760 -12.41210 -12.39864 -12.24565 -12.11702 -12.01640 -11.66720 -11.46526 -11.14649 -10.60800 -10.50887 -10.32335 -10.22052 -9.83448 -9.68162 -9.29005 -8.24192 -6.34560 -0.24403 0.39630 0.80555 1.41752 1.42643 1.53589 1.62031 1.91895 2.09390 2.40587 2.75526 2.94268 3.10520 3.10585 3.75987 3.81844 3.94180 4.03390 4.13986 4.26098 4.30791 4.35382 4.42569 4.43923 4.50149 4.51089 4.59798 4.63501 4.69438 4.79285 4.81775 4.85028 4.96895 5.03356 5.23249 5.28839 5.32772 5.43498 5.51714 5.57678 5.75942 5.82165 5.91950 6.00922 6.16532 6.78229 6.86230 6.93784 7.34657 7.52077 8.87881 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015708 B = 0.002271 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.132895 B =12327.781732 C =13670.138149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.158 3.842 3 H 0.068 0.932 4 C 0.038 3.962 5 N -0.471 5.471 6 C 0.019 3.981 7 C -0.250 4.250 8 S 0.126 5.874 9 N -0.520 5.520 10 C 0.048 3.952 11 C 0.133 3.867 12 N -0.629 5.629 13 C 0.701 3.299 14 O -0.635 6.635 15 N -0.736 5.736 16 C 0.160 3.840 17 C 0.025 3.975 18 C -0.546 4.546 19 H 0.059 0.941 20 C 0.007 3.993 21 N -0.927 5.927 22 Si 0.966 3.034 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.266 1.266 26 C 0.120 3.880 27 C 0.053 3.947 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.191 0.809 32 H 0.202 0.798 33 H 0.119 0.881 34 H 0.034 0.966 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.402 0.598 38 H 0.043 0.957 39 H 0.044 0.956 40 H 0.008 0.992 41 H 0.007 0.993 42 H 0.266 0.734 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.433 4.810 -21.506 30.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.047 3.953 3 H 0.086 0.914 4 C -0.240 4.240 5 N -0.186 5.186 6 C -0.132 4.132 7 C -0.389 4.389 8 S 0.380 5.620 9 N -0.246 5.246 10 C -0.081 4.081 11 C 0.011 3.989 12 N -0.367 5.367 13 C 0.403 3.597 14 O -0.517 6.517 15 N -0.392 5.392 16 C 0.036 3.964 17 C -0.012 4.012 18 C -0.584 4.584 19 H 0.078 0.922 20 C -0.192 4.192 21 N -0.566 5.566 22 Si 0.790 3.210 23 H -0.197 1.197 24 H -0.205 1.205 25 H -0.191 1.191 26 C -0.004 4.004 27 C -0.076 4.076 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.208 0.792 32 H 0.219 0.781 33 H 0.137 0.863 34 H 0.052 0.948 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.240 0.760 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.026 0.974 41 H 0.025 0.975 42 H 0.075 0.925 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.104 0.896 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -21.781 5.384 -20.706 30.531 hybrid contribution 1.598 -0.544 -0.068 1.689 sum -20.183 4.840 -20.774 29.366 Atomic orbital electron populations 1.21824 0.90628 1.03299 1.03420 1.20291 0.97513 0.93628 0.83889 0.91419 1.27060 1.03261 0.92678 1.01017 1.66251 1.17692 1.12671 1.21946 1.22246 0.99700 1.02690 0.88520 1.27469 1.10288 0.93822 1.07307 1.84072 1.55793 1.11097 1.11058 1.61921 1.12647 1.48763 1.01228 1.22589 1.03014 0.94274 0.88201 1.21648 0.78820 1.00005 0.98458 1.47385 1.09735 1.65341 1.14195 1.16056 0.81215 0.79315 0.83155 1.90836 1.77574 1.48960 1.34339 1.45427 1.10580 1.65114 1.18098 1.21091 0.89509 0.99365 0.86409 1.19115 0.90144 0.95374 0.96596 1.21454 0.97077 1.40127 0.99772 0.92247 1.25879 0.99677 0.94468 0.99156 1.70064 1.17313 1.40913 1.28332 0.85430 0.77620 0.78920 0.78988 1.19720 1.20464 1.19062 1.21766 0.99366 0.97269 0.81950 1.22352 0.88149 0.98521 0.98622 0.91995 0.89860 0.90857 0.79222 0.78097 0.86302 0.94782 0.89762 0.89974 0.76021 0.93842 0.93739 0.97398 0.97465 0.92529 0.89827 0.89928 0.89622 0.95051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 9.09 71.98 0.65 -0.86 16 2 C 0.16 2.34 2.59 44.17 0.11 2.45 16 3 H 0.07 0.90 8.13 -2.39 -0.02 0.88 16 4 C 0.04 0.62 4.51 88.52 0.40 1.02 16 5 N -0.47 -8.87 9.81 -191.44 -1.88 -10.75 16 6 C 0.02 0.28 11.35 83.66 0.95 1.23 16 7 C -0.25 -2.87 11.37 66.77 0.76 -2.11 16 8 S 0.13 1.61 23.18 -56.49 -1.31 0.30 16 9 N -0.52 -9.36 4.46 -874.39 -3.90 -13.26 16 10 C 0.05 0.82 5.46 86.39 0.47 1.29 16 11 C 0.13 3.07 6.61 86.35 0.57 3.64 16 12 N -0.63 -17.74 3.01 -835.94 -2.52 -20.26 16 13 C 0.70 26.20 8.31 179.05 1.49 27.69 16 14 O -0.63 -28.47 15.80 -3.99 -0.06 -28.53 16 15 N -0.74 -27.92 5.46 -478.52 -2.61 -30.53 16 16 C 0.16 7.26 5.62 86.38 0.49 7.74 16 17 C 0.03 1.31 5.09 29.85 0.15 1.46 16 18 C -0.55 -30.99 9.11 25.60 0.23 -30.76 16 19 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 20 C 0.01 0.39 5.46 84.65 0.46 0.85 16 21 N -0.93 -54.77 13.29 21.45 0.28 -54.48 16 22 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 25 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 26 C 0.12 2.77 6.54 86.35 0.56 3.33 16 27 C 0.05 1.08 5.32 86.38 0.46 1.54 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.08 0.71 6.38 -2.39 -0.02 0.69 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.19 2.00 8.06 -2.91 -0.02 1.98 16 32 H 0.20 1.16 8.06 -2.91 -0.02 1.13 16 33 H 0.12 1.42 6.13 -2.39 -0.01 1.40 16 34 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.08 2.21 7.04 -2.39 -0.02 2.19 16 36 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.40 13.44 6.01 -92.71 -0.56 12.89 16 38 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 43 H 0.08 1.87 8.14 -2.39 -0.02 1.86 16 44 H 0.08 1.90 5.74 -2.39 -0.01 1.89 16 45 H 0.09 1.77 6.07 -2.39 -0.01 1.76 16 46 H 0.03 0.68 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -71.86 381.37 -1.77 -73.63 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.43 Total: 19.31 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: 7.76 Total: 18.53 kcal Atomic # 7 Polarization: -118.67 SS G_CDS: -10.62 Total: -129.29 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -0.06 Total: -28.53 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -1.31 Total: 0.30 kcal Total: -71.86 -1.77 -73.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344311847.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.710 kcal (2) G-P(sol) polarization free energy of solvation -71.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds