Wall clock time and date at job start Tue Mar 31 2020 20:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47054 * 2 1 4 4 C 1.53000 * 109.47383 * 240.00516 * 2 1 3 5 5 C 1.50696 * 109.47337 * 178.90708 * 4 2 1 6 6 H 1.08006 * 119.99928 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99992 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00038 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99870 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47380 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46732 * 120.00366 * 9 7 5 12 12 H 1.48497 * 109.47448 * 240.00144 * 9 7 5 13 13 N 1.46896 * 109.47401 * 120.00171 * 2 1 3 14 14 C 1.46903 * 110.99931 * 302.06669 * 13 2 1 15 15 C 1.53241 * 109.34102 * 187.25383 * 14 13 2 16 16 N 1.47078 * 108.51959 * 306.17078 * 15 14 13 17 17 C 1.34780 * 120.87911 * 231.18511 * 16 15 14 18 18 O 1.21576 * 119.99987 * 4.56258 * 17 16 15 19 19 C 1.47569 * 119.99693 * 184.55872 * 17 16 15 20 20 C 1.39727 * 120.14332 * 52.63613 * 19 17 16 21 21 C 1.37738 * 119.90395 * 180.02562 * 20 19 17 22 22 C 1.38764 * 120.19512 * 0.02562 * 21 20 19 23 23 F 1.35090 * 119.85838 * 179.97438 * 22 21 20 24 24 C 1.38496 * 120.27943 * 359.97438 * 22 21 20 25 25 C 1.38189 * 120.09595 * 0.02562 * 24 22 21 26 26 F 1.35105 * 120.09595 * 180.02562 * 25 24 22 27 27 C 1.47084 * 118.23874 * 51.45611 * 16 15 14 28 28 C 1.46895 * 111.00024 * 66.36609 * 13 2 1 29 29 H 1.09001 * 109.47579 * 299.99695 * 1 2 3 30 30 H 1.08999 * 109.47478 * 59.99928 * 1 2 3 31 31 H 1.09000 * 109.46942 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46811 * 298.90509 * 4 2 1 33 33 H 1.09000 * 109.47046 * 58.90407 * 4 2 1 34 34 H 0.97002 * 120.00096 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.49585 * 67.28810 * 14 13 2 36 36 H 1.08999 * 109.51291 * 307.22549 * 14 13 2 37 37 H 1.08997 * 109.62866 * 186.45538 * 15 14 13 38 38 H 1.09000 * 109.62940 * 65.87408 * 15 14 13 39 39 H 1.07999 * 120.04980 * 0.03507 * 20 19 17 40 40 H 1.08004 * 119.90290 * 180.28036 * 21 20 19 41 41 H 1.08003 * 119.94862 * 179.97438 * 24 22 21 42 42 H 1.08995 * 109.62969 * 68.25437 * 27 16 15 43 43 H 1.09000 * 109.62513 * 188.83550 * 27 16 15 44 44 H 1.08997 * 109.49307 * 292.70301 * 28 13 2 45 45 H 1.08998 * 109.49434 * 52.76499 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5467 -0.6977 -1.2629 6 1 4.0866 -0.2169 -0.4605 7 6 4.2361 -1.2909 -2.2992 8 7 3.5787 -1.8768 -3.2760 9 14 6.1038 -1.2612 -2.3164 10 1 6.5987 -0.5455 -1.1130 11 1 6.6210 -2.6533 -2.3114 12 1 6.5766 -0.5619 -3.5381 13 7 2.0197 -0.6925 1.1994 14 6 1.5087 -0.0555 2.4205 15 6 2.1817 -0.6888 3.6430 16 7 1.9947 -2.1461 3.5767 17 6 1.5044 -2.8292 4.6300 18 8 1.1327 -2.2324 5.6219 19 6 1.4188 -4.3015 4.5793 20 6 2.5454 -5.0590 4.2488 21 6 2.4598 -6.4329 4.2024 22 6 1.2577 -7.0671 4.4825 23 9 1.1812 -8.4150 4.4345 24 6 0.1361 -6.3240 4.8110 25 6 0.2087 -4.9449 4.8610 26 9 -0.8853 -4.2201 5.1820 27 6 2.3625 -2.8391 2.3325 28 6 1.6768 -2.1203 1.1597 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6928 -1.7543 -1.2396 33 1 1.6607 -0.2187 -2.1391 34 1 4.0637 -2.2945 -4.0048 35 1 0.4303 -0.2011 2.4828 36 1 1.7307 1.0113 2.3950 37 1 1.7249 -0.3020 4.5538 38 1 3.2465 -0.4557 3.6365 39 1 3.4821 -4.5679 4.0301 40 1 3.3318 -7.0186 3.9513 41 1 -0.7969 -6.8231 5.0277 42 1 3.4443 -2.8087 2.2025 43 1 2.0251 -3.8746 2.3767 44 1 0.5961 -2.2373 1.2396 45 1 2.0208 -2.5510 0.2193 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351406527.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:08 Heat of formation + Delta-G solvation = -99.930553 kcal Electronic energy + Delta-G solvation = -30049.929936 eV Core-core repulsion = 25703.025232 eV Total energy + Delta-G solvation = -4346.904704 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.21586 -50.12977 -41.62940 -39.93386 -39.07433 -36.70984 -34.74290 -33.11098 -32.01242 -31.89994 -31.47803 -29.23341 -27.69034 -25.48422 -24.85837 -24.64948 -24.10528 -22.68525 -21.15137 -20.03112 -19.28011 -18.63485 -18.34879 -18.16317 -17.55521 -17.12223 -16.86105 -16.64106 -16.49614 -16.41143 -16.17175 -15.81792 -15.69973 -15.48978 -15.34344 -15.04478 -14.68951 -14.33565 -13.99518 -13.81888 -13.68224 -13.53065 -13.38814 -13.24007 -13.00690 -12.86860 -12.64311 -12.57897 -12.50337 -12.31245 -12.05504 -11.91352 -11.69707 -11.16650 -11.03542 -10.96410 -10.42717 -10.24211 -9.98003 -9.80616 -8.96763 -8.04646 -6.09279 -0.51490 -0.14139 1.37117 1.46118 1.49485 1.60867 1.77650 2.23063 2.52558 2.64902 3.04840 3.14481 3.22601 3.32265 3.45990 3.77858 3.89722 3.98209 4.02823 4.14813 4.23993 4.29021 4.36843 4.45091 4.53925 4.55913 4.58351 4.61901 4.73377 4.74586 4.83070 4.86918 4.91553 4.94335 5.04725 5.07178 5.15875 5.24809 5.38501 5.53998 5.54721 5.74200 5.94811 6.17098 6.32883 6.36895 6.52052 6.89416 7.05811 7.57601 9.07341 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011478 B = 0.003499 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.802977 B = 7999.532053 C = 9225.123916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.095 3.905 3 H 0.070 0.930 4 C 0.033 3.967 5 C -0.494 4.494 6 H 0.063 0.937 7 C 0.000 4.000 8 N -0.939 5.939 9 Si 0.952 3.048 10 H -0.264 1.264 11 H -0.282 1.282 12 H -0.290 1.290 13 N -0.519 5.519 14 C 0.042 3.958 15 C 0.121 3.879 16 N -0.596 5.596 17 C 0.562 3.438 18 O -0.571 6.571 19 C -0.186 4.186 20 C -0.023 4.023 21 C -0.150 4.150 22 C 0.150 3.850 23 F -0.126 7.126 24 C -0.191 4.191 25 C 0.154 3.846 26 F -0.135 7.135 27 C 0.116 3.884 28 C 0.044 3.956 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.043 0.957 32 H 0.004 0.996 33 H -0.011 1.011 34 H 0.257 0.743 35 H 0.030 0.970 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.171 0.829 40 H 0.181 0.819 41 H 0.170 0.830 42 H 0.092 0.908 43 H 0.103 0.897 44 H 0.024 0.976 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.273 -8.690 16.141 18.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.013 4.013 3 H 0.088 0.912 4 C -0.004 4.004 5 C -0.532 4.532 6 H 0.081 0.919 7 C -0.196 4.196 8 N -0.582 5.582 9 Si 0.779 3.221 10 H -0.188 1.188 11 H -0.208 1.208 12 H -0.217 1.217 13 N -0.243 5.243 14 C -0.086 4.086 15 C -0.002 4.002 16 N -0.328 5.328 17 C 0.350 3.650 18 O -0.451 6.451 19 C -0.191 4.191 20 C -0.042 4.042 21 C -0.168 4.168 22 C 0.130 3.870 23 F -0.104 7.104 24 C -0.211 4.211 25 C 0.134 3.866 26 F -0.113 7.113 27 C -0.006 4.006 28 C -0.084 4.084 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.022 0.978 33 H 0.007 0.993 34 H 0.066 0.934 35 H 0.048 0.952 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.188 0.812 40 H 0.199 0.801 41 H 0.188 0.812 42 H 0.110 0.890 43 H 0.121 0.879 44 H 0.042 0.958 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.963 -8.418 16.522 18.778 hybrid contribution -0.560 -0.068 -0.591 0.818 sum -3.523 -8.486 15.930 18.390 Atomic orbital electron populations 1.22393 0.97827 1.01185 1.01898 1.21635 0.91508 0.97745 0.90404 0.91209 1.19136 0.95593 0.94469 0.91221 1.21484 0.92445 1.33461 1.05838 0.91853 1.25772 1.02392 0.95831 0.95590 1.70096 1.36810 1.39273 1.11996 0.85590 0.81207 0.77582 0.77758 1.18768 1.20798 1.21691 1.62023 1.59129 1.01920 1.01271 1.22496 0.96653 0.99832 0.89653 1.21782 1.01933 0.78215 0.98229 1.48207 1.62101 1.08801 1.13679 1.18279 0.76868 0.87144 0.82662 1.90776 1.50056 1.70771 1.33496 1.20016 0.95427 0.93553 1.10065 1.21297 0.97424 0.93061 0.92387 1.21478 0.98110 0.94682 1.02577 1.17572 0.94142 0.77148 0.98130 1.91566 1.96897 1.28595 1.93386 1.21089 1.01585 0.91344 1.07070 1.17414 0.82260 0.89069 0.97898 1.91546 1.52155 1.77913 1.89700 1.22201 1.01309 0.96269 0.80857 1.22491 0.96879 0.89705 0.99364 0.91871 0.92413 0.93746 0.97800 0.99254 0.93390 0.95225 0.88614 0.89110 0.89472 0.81184 0.80135 0.81207 0.88986 0.87927 0.95782 0.89821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.62 8.50 71.98 0.61 -5.01 16 2 C 0.10 3.57 2.43 44.91 0.11 3.68 16 3 H 0.07 2.65 8.14 -2.38 -0.02 2.63 16 4 C 0.03 1.58 3.99 29.85 0.12 1.69 16 5 C -0.49 -25.68 8.71 25.60 0.22 -25.46 16 6 H 0.06 3.26 7.70 -2.91 -0.02 3.24 16 7 C 0.00 0.02 5.46 84.66 0.46 0.48 16 8 N -0.94 -54.38 13.29 21.45 0.28 -54.10 16 9 Si 0.95 42.46 29.54 68.60 2.03 44.49 16 10 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 12 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 13 N -0.52 -17.40 4.24 -869.10 -3.69 -21.08 16 14 C 0.04 1.17 4.93 86.38 0.43 1.59 16 15 C 0.12 3.11 6.61 86.35 0.57 3.69 16 16 N -0.60 -15.66 3.00 -820.77 -2.46 -18.12 16 17 C 0.56 15.86 6.93 86.70 0.60 16.46 16 18 O -0.57 -20.08 16.25 -3.96 -0.06 -20.14 16 19 C -0.19 -4.20 4.69 -20.05 -0.09 -4.30 16 20 C -0.02 -0.36 7.71 22.51 0.17 -0.19 16 21 C -0.15 -1.88 10.01 22.28 0.22 -1.66 16 22 C 0.15 2.28 7.30 22.46 0.16 2.44 16 23 F -0.13 -1.98 17.26 44.97 0.78 -1.20 16 24 C -0.19 -3.28 9.99 22.32 0.22 -3.06 16 25 C 0.15 3.50 7.26 22.66 0.16 3.67 16 26 F -0.13 -3.72 16.61 44.97 0.75 -2.97 16 27 C 0.12 2.91 5.62 86.50 0.49 3.40 16 28 C 0.04 1.43 4.84 86.54 0.42 1.84 16 29 H 0.06 1.78 6.54 -2.39 -0.02 1.76 16 30 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.04 1.47 6.73 -2.39 -0.02 1.45 16 32 H 0.00 0.20 6.10 -2.39 -0.01 0.18 16 33 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 34 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 35 H 0.03 0.85 6.70 -2.39 -0.02 0.83 16 36 H 0.10 2.41 8.11 -2.39 -0.02 2.39 16 37 H 0.09 2.39 7.04 -2.39 -0.02 2.37 16 38 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.17 2.00 7.61 -2.91 -0.02 1.98 16 40 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 41 H 0.17 2.26 8.06 -2.91 -0.02 2.23 16 42 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.10 2.16 5.40 -2.39 -0.01 2.15 16 44 H 0.02 0.78 6.84 -2.39 -0.02 0.76 16 45 H 0.08 3.22 5.73 -2.39 -0.01 3.21 16 Total: -1.00 -66.48 366.13 3.52 -62.96 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 1.02 Total: 10.91 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: 4.88 Total: -0.74 kcal Atomic # 7 Polarization: -87.44 SS G_CDS: -5.87 Total: -93.31 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.06 Total: -20.14 kcal Atomic # 9 Polarization: -5.70 SS G_CDS: 1.52 Total: -4.18 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -66.48 3.52 -62.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351406527.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.973 kcal (2) G-P(sol) polarization free energy of solvation -66.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds