Wall clock time and date at job start Tue Mar 31 2020 20:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42899 * 113.99911 * 2 1 4 4 C 1.52998 * 109.46850 * 180.02562 * 3 2 1 5 5 O 1.42907 * 109.47131 * 64.99979 * 4 3 2 6 6 C 1.35992 * 116.99746 * 179.97438 * 5 4 3 7 7 C 1.38503 * 120.04169 * 0.26098 * 6 5 4 8 8 C 1.38801 * 119.93551 * 180.27541 * 7 6 5 9 9 N 1.40143 * 120.00070 * 179.74283 * 8 7 6 10 10 C 1.34770 * 119.99858 * 214.81975 * 9 8 7 11 11 O 1.21585 * 120.00199 * 355.38098 * 10 9 8 12 12 N 1.34778 * 119.99333 * 175.38389 * 10 9 8 13 13 C 1.46502 * 119.99689 * 180.02562 * 12 10 9 14 14 H 1.09005 * 109.47228 * 324.99605 * 13 12 10 15 15 C 1.52998 * 109.47293 * 84.99864 * 13 12 10 16 16 C 1.50703 * 109.47393 * 204.99898 * 13 12 10 17 17 H 1.07999 * 119.99831 * 359.97438 * 16 13 12 18 18 C 1.37871 * 120.00260 * 180.27217 * 16 13 12 19 19 N 1.31521 * 120.00101 * 359.72803 * 18 16 13 20 20 Si 1.86799 * 120.00258 * 179.72378 * 18 16 13 21 21 H 1.48504 * 109.46829 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47436 * 119.99936 * 20 18 16 23 23 H 1.48500 * 109.47305 * 240.00679 * 20 18 16 24 24 C 1.38833 * 120.00393 * 359.46298 * 8 7 6 25 25 C 1.38192 * 120.07677 * 0.25712 * 24 8 7 26 26 C 1.38548 * 120.06712 * 0.02562 * 25 24 8 27 27 O 1.36072 * 120.00458 * 179.97438 * 26 25 24 28 28 C 1.42897 * 116.99862 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.46417 * 300.00301 * 1 2 3 30 30 H 1.09003 * 109.46879 * 59.99786 * 1 2 3 31 31 H 1.08993 * 109.47478 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47379 * 60.00052 * 3 2 1 33 33 H 1.09000 * 109.47267 * 299.99924 * 3 2 1 34 34 H 1.09001 * 109.47147 * 304.99997 * 4 3 2 35 35 H 1.08996 * 109.47471 * 184.99959 * 4 3 2 36 36 H 1.08011 * 120.03651 * 0.02562 * 7 6 5 37 37 H 0.97001 * 119.99439 * 34.81972 * 9 8 7 38 38 H 0.97001 * 120.00780 * 0.02562 * 12 10 9 39 39 H 1.09004 * 109.46967 * 299.99789 * 15 13 12 40 40 H 1.08997 * 109.47276 * 60.00376 * 15 13 12 41 41 H 1.09006 * 109.47293 * 179.97438 * 15 13 12 42 42 H 0.96995 * 120.00131 * 180.02562 * 19 18 16 43 43 H 1.08007 * 119.96089 * 180.27870 * 24 8 7 44 44 H 1.08001 * 119.96447 * 180.02562 * 25 24 8 45 45 H 1.09007 * 109.47114 * 179.97438 * 28 27 26 46 46 H 1.08998 * 109.46917 * 299.98971 * 28 27 26 47 47 H 1.08999 * 109.47552 * 59.99223 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2220 6 6 5.3029 0.3985 -1.3843 7 6 6.1814 0.7897 -0.3875 8 6 7.5470 0.6091 -0.5578 9 7 8.4376 1.0094 0.4475 10 6 9.6476 1.5031 0.1185 11 8 10.0000 1.5234 -1.0450 12 7 10.4671 1.9742 1.0792 13 6 11.7823 2.5114 0.7215 14 1 12.1898 1.9464 -0.1169 15 6 11.6417 3.9824 0.3250 16 6 12.7104 2.3962 1.9032 17 1 12.3559 1.9662 2.8284 18 6 14.0102 2.8453 1.8053 19 7 14.4419 3.3693 0.6789 20 14 15.1584 2.7095 3.2726 21 1 14.4354 2.0876 4.4109 22 1 16.3273 1.8683 2.9103 23 1 15.6252 4.0641 3.6628 24 6 8.0305 0.0268 -1.7217 25 6 7.1539 -0.3690 -2.7140 26 6 5.7906 -0.1848 -2.5497 27 8 4.9286 -0.5745 -3.5278 28 6 5.4986 -1.1667 -4.6967 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 3.8515 0.5681 0.8409 35 1 3.9786 2.1764 0.0889 36 1 5.8046 1.2385 0.5198 37 1 8.1829 0.9310 1.3802 38 1 10.1862 1.9576 2.0075 39 1 10.9705 4.0657 -0.5298 40 1 11.2344 4.5474 1.1634 41 1 12.6204 4.3822 0.0593 42 1 15.3564 3.6850 0.6099 43 1 9.0930 -0.1175 -1.8516 44 1 7.5319 -0.8222 -3.6185 45 1 4.7039 -1.4310 -5.3945 46 1 6.1767 -0.4565 -5.1699 47 1 6.0498 -2.0645 -4.4173 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359796673.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:14 Heat of formation + Delta-G solvation = -114.161262 kcal Electronic energy + Delta-G solvation = -28929.209056 eV Core-core repulsion = 24692.774777 eV Total energy + Delta-G solvation = -4236.434278 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.70909 -39.54731 -38.77327 -37.80508 -36.89506 -34.85526 -33.84843 -32.36893 -31.21876 -29.98435 -29.26706 -28.28579 -26.78494 -26.60616 -25.26632 -23.77147 -22.84824 -21.64912 -21.06062 -19.85771 -18.64539 -18.29368 -17.60424 -17.13907 -16.73153 -16.22537 -15.93780 -15.84603 -15.56203 -15.27568 -15.05871 -14.94089 -14.68918 -14.42226 -14.14672 -13.97007 -13.34570 -12.96930 -12.85754 -12.59971 -12.50897 -12.39147 -12.14114 -11.81840 -11.73471 -11.43441 -11.32675 -11.13595 -11.08868 -11.05721 -10.92839 -10.72698 -10.31821 -10.25530 -10.04658 -9.63046 -9.30886 -9.05623 -8.58512 -8.51705 -7.98432 -7.32050 -6.14614 -4.23774 1.33374 1.57071 3.01873 3.17185 3.22298 3.30349 3.32594 3.36414 3.39715 3.64349 4.01626 4.30553 4.56102 4.76491 4.79319 4.88806 4.94306 4.97150 5.01418 5.05403 5.09860 5.13807 5.18112 5.20607 5.34195 5.34477 5.37452 5.42819 5.48044 5.58135 5.87617 6.43192 6.45032 6.58523 6.76510 6.79358 6.96765 7.03826 7.06878 7.11810 7.23927 7.44627 7.60542 7.62777 7.81857 7.98418 8.13623 8.71248 8.83363 9.22596 9.44825 10.91422 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.016567 B = 0.002180 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.722512 B =12840.079226 C =14082.814903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.064 3.936 4 C 0.059 3.941 5 O -0.295 6.295 6 C 0.119 3.881 7 C -0.209 4.209 8 C 0.184 3.816 9 N -0.695 5.695 10 C 0.693 3.307 11 O -0.581 6.581 12 N -0.719 5.719 13 C 0.280 3.720 14 H 0.050 0.950 15 C -0.148 4.148 16 C -0.533 4.533 17 H 0.062 0.938 18 C 0.065 3.935 19 N -0.882 5.882 20 Si 0.903 3.097 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.116 4.116 25 C -0.151 4.151 26 C 0.073 3.927 27 O -0.310 6.310 28 C 0.027 3.973 29 H 0.040 0.960 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.134 0.866 37 H 0.402 0.598 38 H 0.386 0.614 39 H 0.015 0.985 40 H 0.025 0.975 41 H 0.091 0.909 42 H 0.264 0.736 43 H 0.149 0.851 44 H 0.136 0.864 45 H 0.095 0.905 46 H 0.053 0.947 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.580 -6.065 -2.336 25.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.013 4.013 4 C -0.017 4.017 5 O -0.209 6.209 6 C 0.073 3.927 7 C -0.231 4.231 8 C 0.088 3.912 9 N -0.343 5.343 10 C 0.394 3.606 11 O -0.459 6.459 12 N -0.370 5.370 13 C 0.178 3.822 14 H 0.068 0.932 15 C -0.207 4.207 16 C -0.571 4.571 17 H 0.080 0.920 18 C -0.138 4.138 19 N -0.520 5.520 20 Si 0.730 3.270 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.137 4.137 25 C -0.170 4.170 26 C 0.027 3.973 27 O -0.224 6.224 28 C -0.068 4.068 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.152 0.848 37 H 0.236 0.764 38 H 0.218 0.782 39 H 0.034 0.966 40 H 0.045 0.955 41 H 0.109 0.891 42 H 0.074 0.926 43 H 0.167 0.833 44 H 0.153 0.847 45 H 0.114 0.886 46 H 0.072 0.928 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -24.210 -6.088 -3.578 25.219 hybrid contribution 0.532 0.300 1.797 1.898 sum -23.678 -5.788 -1.781 24.440 Atomic orbital electron populations 1.22752 0.80972 1.02930 0.99888 1.87986 1.19685 1.27129 1.95389 1.22564 0.91671 0.85725 1.01319 1.22822 0.93588 0.98324 0.86940 1.86214 1.19120 1.77200 1.38388 1.17767 0.82741 0.99676 0.92560 1.20661 0.92217 1.09552 1.00660 1.17136 0.87652 0.96083 0.90337 1.42809 1.15795 1.67273 1.08443 1.16144 0.79792 0.78546 0.86159 1.90866 1.74604 1.62744 1.17668 1.45866 1.19156 1.64162 1.07811 1.18692 0.75850 0.90813 0.96833 0.93233 1.22106 1.02282 0.98969 0.97344 1.21240 0.95976 1.41708 0.98216 0.92022 1.24889 0.97917 0.94708 0.96263 1.69914 1.17059 1.40114 1.24908 0.86375 0.80602 0.77780 0.82206 1.19768 1.20871 1.20882 1.21168 1.01520 0.98061 0.92949 1.20972 0.90640 1.04393 1.01021 1.18136 0.88692 1.01697 0.88778 1.86149 1.33648 1.75976 1.26579 1.23011 1.00218 0.97362 0.86199 0.94154 0.93946 0.89530 0.91191 0.92048 0.91142 0.90436 0.84798 0.76362 0.78175 0.96557 0.95549 0.89068 0.92590 0.83313 0.84661 0.88619 0.92798 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -3.97 10.67 -40.09 -0.43 -4.40 16 3 C 0.06 0.52 6.32 37.16 0.23 0.76 16 4 C 0.06 0.56 5.12 37.16 0.19 0.75 16 5 O -0.30 -4.01 9.88 -40.75 -0.40 -4.41 16 6 C 0.12 1.69 6.70 -39.14 -0.26 1.43 16 7 C -0.21 -2.78 8.95 -39.28 -0.35 -3.13 16 8 C 0.18 2.85 6.30 -83.63 -0.53 2.33 16 9 N -0.69 -10.68 5.35 -14.20 -0.08 -10.76 16 10 C 0.69 13.91 8.37 -86.92 -0.73 13.19 16 11 O -0.58 -13.85 13.44 5.29 0.07 -13.78 16 12 N -0.72 -14.71 5.07 -59.81 -0.30 -15.01 16 13 C 0.28 7.05 2.56 -69.08 -0.18 6.87 16 14 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 15 C -0.15 -3.68 9.26 37.16 0.34 -3.34 16 16 C -0.53 -13.91 8.73 -34.44 -0.30 -14.21 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 19 N -0.88 -24.63 11.31 55.43 0.63 -24.01 16 20 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 C -0.12 -1.90 8.69 -39.38 -0.34 -2.24 16 25 C -0.15 -2.14 9.03 -39.48 -0.36 -2.49 16 26 C 0.07 1.06 6.70 -39.13 -0.26 0.80 16 27 O -0.31 -4.26 10.28 -34.57 -0.36 -4.62 16 28 C 0.03 0.26 9.81 101.05 0.99 1.25 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.63 7.65 -51.93 -0.40 0.23 16 35 H 0.08 0.61 7.67 -51.93 -0.40 0.21 16 36 H 0.13 1.40 6.30 -52.48 -0.33 1.07 16 37 H 0.40 4.71 8.84 -40.82 -0.36 4.34 16 38 H 0.39 6.69 8.56 -40.82 -0.35 6.34 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 2.46 6.06 -51.93 -0.31 2.14 16 42 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.15 2.74 6.21 -52.48 -0.33 2.41 16 44 H 0.14 1.58 6.29 -52.49 -0.33 1.25 16 45 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.05 0.46 7.66 -51.93 -0.40 0.07 16 47 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 LS Contribution 391.37 15.07 5.90 5.90 Total: -1.00 -33.92 391.37 -7.44 -41.36 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -6.92 Total: 9.40 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -0.53 Total: 4.92 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 0.25 Total: -49.77 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -1.11 Total: -27.21 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.92 -7.44 -41.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359796673.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.801 kcal (2) G-P(sol) polarization free energy of solvation -33.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds