Wall clock time and date at job start Tue Mar 31 2020 20:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42899 * 113.99911 * 2 1 4 4 C 1.52998 * 109.46850 * 180.02562 * 3 2 1 5 5 O 1.42907 * 109.47131 * 64.99979 * 4 3 2 6 6 C 1.35992 * 116.99746 * 179.97438 * 5 4 3 7 7 C 1.38503 * 120.04169 * 0.26098 * 6 5 4 8 8 C 1.38801 * 119.93551 * 180.27541 * 7 6 5 9 9 N 1.40143 * 120.00070 * 179.74283 * 8 7 6 10 10 C 1.34770 * 119.99858 * 214.81975 * 9 8 7 11 11 O 1.21585 * 120.00199 * 355.38098 * 10 9 8 12 12 N 1.34778 * 119.99333 * 175.38389 * 10 9 8 13 13 C 1.46502 * 119.99689 * 180.02562 * 12 10 9 14 14 H 1.09005 * 109.47228 * 324.99605 * 13 12 10 15 15 C 1.52998 * 109.47293 * 84.99864 * 13 12 10 16 16 C 1.50703 * 109.47393 * 204.99898 * 13 12 10 17 17 H 1.07999 * 119.99831 * 359.97438 * 16 13 12 18 18 C 1.37871 * 120.00260 * 180.27217 * 16 13 12 19 19 N 1.31521 * 120.00101 * 359.72803 * 18 16 13 20 20 Si 1.86799 * 120.00258 * 179.72378 * 18 16 13 21 21 H 1.48504 * 109.46829 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47436 * 119.99936 * 20 18 16 23 23 H 1.48500 * 109.47305 * 240.00679 * 20 18 16 24 24 C 1.38833 * 120.00393 * 359.46298 * 8 7 6 25 25 C 1.38192 * 120.07677 * 0.25712 * 24 8 7 26 26 C 1.38548 * 120.06712 * 0.02562 * 25 24 8 27 27 O 1.36072 * 120.00458 * 179.97438 * 26 25 24 28 28 C 1.42897 * 116.99862 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.46417 * 300.00301 * 1 2 3 30 30 H 1.09003 * 109.46879 * 59.99786 * 1 2 3 31 31 H 1.08993 * 109.47478 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47379 * 60.00052 * 3 2 1 33 33 H 1.09000 * 109.47267 * 299.99924 * 3 2 1 34 34 H 1.09001 * 109.47147 * 304.99997 * 4 3 2 35 35 H 1.08996 * 109.47471 * 184.99959 * 4 3 2 36 36 H 1.08011 * 120.03651 * 0.02562 * 7 6 5 37 37 H 0.97001 * 119.99439 * 34.81972 * 9 8 7 38 38 H 0.97001 * 120.00780 * 0.02562 * 12 10 9 39 39 H 1.09004 * 109.46967 * 299.99789 * 15 13 12 40 40 H 1.08997 * 109.47276 * 60.00376 * 15 13 12 41 41 H 1.09006 * 109.47293 * 179.97438 * 15 13 12 42 42 H 0.96995 * 120.00131 * 180.02562 * 19 18 16 43 43 H 1.08007 * 119.96089 * 180.27870 * 24 8 7 44 44 H 1.08001 * 119.96447 * 180.02562 * 25 24 8 45 45 H 1.09007 * 109.47114 * 179.97438 * 28 27 26 46 46 H 1.08998 * 109.46917 * 299.98971 * 28 27 26 47 47 H 1.08999 * 109.47552 * 59.99223 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2220 6 6 5.3029 0.3985 -1.3843 7 6 6.1814 0.7897 -0.3875 8 6 7.5470 0.6091 -0.5578 9 7 8.4376 1.0094 0.4475 10 6 9.6476 1.5031 0.1185 11 8 10.0000 1.5234 -1.0450 12 7 10.4671 1.9742 1.0792 13 6 11.7823 2.5114 0.7215 14 1 12.1898 1.9464 -0.1169 15 6 11.6417 3.9824 0.3250 16 6 12.7104 2.3962 1.9032 17 1 12.3559 1.9662 2.8284 18 6 14.0102 2.8453 1.8053 19 7 14.4419 3.3693 0.6789 20 14 15.1584 2.7095 3.2726 21 1 14.4354 2.0876 4.4109 22 1 16.3273 1.8683 2.9103 23 1 15.6252 4.0641 3.6628 24 6 8.0305 0.0268 -1.7217 25 6 7.1539 -0.3690 -2.7140 26 6 5.7906 -0.1848 -2.5497 27 8 4.9286 -0.5745 -3.5278 28 6 5.4986 -1.1667 -4.6967 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 3.8515 0.5681 0.8409 35 1 3.9786 2.1764 0.0889 36 1 5.8046 1.2385 0.5198 37 1 8.1829 0.9310 1.3802 38 1 10.1862 1.9576 2.0075 39 1 10.9705 4.0657 -0.5298 40 1 11.2344 4.5474 1.1634 41 1 12.6204 4.3822 0.0593 42 1 15.3564 3.6850 0.6099 43 1 9.0930 -0.1175 -1.8516 44 1 7.5319 -0.8222 -3.6185 45 1 4.7039 -1.4310 -5.3945 46 1 6.1767 -0.4565 -5.1699 47 1 6.0498 -2.0645 -4.4173 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359796673.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:13 Heat of formation + Delta-G solvation = -138.340227 kcal Electronic energy + Delta-G solvation = -28930.257534 eV Core-core repulsion = 24692.774777 eV Total energy + Delta-G solvation = -4237.482757 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.88000 -40.93320 -39.65075 -38.61707 -38.09732 -36.64013 -35.25890 -34.23203 -32.03602 -31.27607 -30.62269 -29.51872 -27.74978 -27.31422 -27.20275 -24.59167 -24.25436 -22.76734 -22.43795 -21.54002 -19.89415 -19.67970 -18.71918 -18.17729 -17.80638 -17.39198 -17.33144 -16.80218 -16.73674 -16.32221 -16.25849 -15.91177 -15.84767 -15.80944 -15.61300 -15.04491 -14.84547 -14.39576 -14.01259 -13.79807 -13.67636 -13.59841 -13.20341 -12.98602 -12.95880 -12.88646 -12.73176 -12.42321 -12.29700 -12.26235 -12.19791 -12.13101 -12.03685 -11.82011 -11.16167 -11.07534 -10.73357 -10.63613 -10.59560 -9.82506 -9.55504 -8.49360 -8.16417 -6.33448 0.22669 0.39908 1.45861 1.46652 1.58395 1.73791 2.16670 2.20144 2.40429 2.43767 2.76222 2.83759 3.14238 3.44082 3.77875 3.96957 4.05306 4.14109 4.18506 4.28097 4.37650 4.43594 4.45801 4.47075 4.51463 4.55444 4.58144 4.70848 4.74089 4.76943 4.78747 4.88788 4.94899 5.11063 5.25905 5.31331 5.35428 5.45780 5.61509 5.68106 5.80467 5.87879 6.09665 6.10929 6.23573 6.27827 6.62391 6.74654 7.24917 7.35325 7.69189 8.90153 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.016567 B = 0.002180 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.722512 B =12840.079226 C =14082.814903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.062 3.938 4 C 0.047 3.953 5 O -0.312 6.312 6 C 0.113 3.887 7 C -0.193 4.193 8 C 0.164 3.836 9 N -0.673 5.673 10 C 0.693 3.307 11 O -0.623 6.623 12 N -0.713 5.713 13 C 0.288 3.712 14 H 0.001 0.999 15 C -0.134 4.134 16 C -0.543 4.543 17 H 0.075 0.925 18 C 0.013 3.987 19 N -0.917 5.917 20 Si 0.974 3.026 21 H -0.259 1.259 22 H -0.285 1.285 23 H -0.279 1.279 24 C -0.138 4.138 25 C -0.149 4.149 26 C 0.067 3.933 27 O -0.326 6.326 28 C 0.018 3.982 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.166 0.834 37 H 0.422 0.578 38 H 0.404 0.596 39 H 0.010 0.990 40 H 0.040 0.960 41 H 0.067 0.933 42 H 0.265 0.735 43 H 0.121 0.879 44 H 0.154 0.846 45 H 0.120 0.880 46 H 0.059 0.941 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.514 -6.105 -0.446 27.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.014 4.014 4 C -0.027 4.027 5 O -0.226 6.226 6 C 0.066 3.934 7 C -0.214 4.214 8 C 0.068 3.932 9 N -0.323 5.323 10 C 0.394 3.606 11 O -0.504 6.504 12 N -0.366 5.366 13 C 0.184 3.816 14 H 0.018 0.982 15 C -0.193 4.193 16 C -0.582 4.582 17 H 0.093 0.907 18 C -0.187 4.187 19 N -0.555 5.555 20 Si 0.799 3.201 21 H -0.183 1.183 22 H -0.211 1.211 23 H -0.205 1.205 24 C -0.159 4.159 25 C -0.169 4.169 26 C 0.021 3.979 27 O -0.241 6.241 28 C -0.077 4.077 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.115 0.885 36 H 0.183 0.817 37 H 0.260 0.740 38 H 0.239 0.761 39 H 0.029 0.971 40 H 0.059 0.941 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.139 0.861 44 H 0.171 0.829 45 H 0.138 0.862 46 H 0.077 0.923 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -26.223 -6.152 -1.644 26.985 hybrid contribution 0.966 0.258 1.102 1.488 sum -25.257 -5.894 -0.542 25.941 Atomic orbital electron populations 1.22911 0.79421 1.03689 1.00982 1.87931 1.21558 1.28498 1.95653 1.22711 0.90679 0.85282 1.02749 1.23195 0.94717 0.99188 0.85643 1.86214 1.18409 1.77514 1.40481 1.17977 0.83468 0.99302 0.92632 1.20811 0.90790 1.08355 1.01453 1.17277 0.88466 0.97161 0.90246 1.42399 1.14083 1.66090 1.09688 1.16223 0.80778 0.78350 0.85280 1.90850 1.75802 1.64201 1.19501 1.45433 1.17898 1.64343 1.08897 1.18265 0.77791 0.90280 0.95219 0.98156 1.21924 1.00834 0.98987 0.97584 1.21553 0.96383 1.41554 0.98667 0.90691 1.25801 0.99639 0.94302 0.98960 1.70062 1.17475 1.40974 1.27039 0.85270 0.78162 0.77732 0.78974 1.18305 1.21125 1.20507 1.21057 1.00492 0.99892 0.94465 1.21064 0.90486 1.04145 1.01173 1.18355 0.88806 1.01399 0.89350 1.86133 1.34316 1.76146 1.27472 1.23316 1.01466 0.97668 0.85208 0.92384 0.93477 0.89079 0.88144 0.92109 0.90375 0.88483 0.81671 0.73987 0.76068 0.97067 0.94058 0.91396 0.92558 0.86117 0.82891 0.86221 0.92254 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.42 -7.96 10.67 -144.34 -1.54 -9.50 16 3 C 0.06 0.87 6.32 71.98 0.45 1.33 16 4 C 0.05 0.78 5.12 71.98 0.37 1.15 16 5 O -0.31 -7.99 9.88 -73.34 -0.72 -8.71 16 6 C 0.11 3.07 6.70 22.55 0.15 3.22 16 7 C -0.19 -4.78 8.95 22.47 0.20 -4.58 16 8 C 0.16 4.99 6.30 38.09 0.24 5.23 16 9 N -0.67 -20.09 5.35 -317.11 -1.70 -21.79 16 10 C 0.69 28.08 8.37 179.06 1.50 29.58 16 11 O -0.62 -30.88 13.44 -3.98 -0.05 -30.93 16 12 N -0.71 -29.07 5.07 -461.40 -2.34 -31.41 16 13 C 0.29 14.80 2.56 44.25 0.11 14.92 16 14 H 0.00 0.03 7.58 -2.38 -0.02 0.01 16 15 C -0.13 -6.79 9.26 71.98 0.67 -6.13 16 16 C -0.54 -28.23 8.73 25.60 0.22 -28.01 16 17 H 0.08 3.61 7.74 -2.91 -0.02 3.59 16 18 C 0.01 0.69 5.30 84.65 0.45 1.14 16 19 N -0.92 -52.18 11.31 21.45 0.24 -51.93 16 20 Si 0.97 41.48 29.54 68.60 2.03 43.50 16 21 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 22 H -0.29 -12.18 7.11 99.48 0.71 -11.48 16 23 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 24 C -0.14 -4.62 8.69 22.40 0.19 -4.43 16 25 C -0.15 -4.25 9.03 22.33 0.20 -4.05 16 26 C 0.07 1.91 6.70 22.56 0.15 2.06 16 27 O -0.33 -8.69 10.28 -80.40 -0.83 -9.52 16 28 C 0.02 0.31 9.81 113.37 1.11 1.42 16 29 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.08 1.17 7.65 -2.39 -0.02 1.15 16 35 H 0.10 1.21 7.67 -2.39 -0.02 1.19 16 36 H 0.17 2.91 6.30 -2.90 -0.02 2.89 16 37 H 0.42 8.98 8.84 -92.71 -0.82 8.17 16 38 H 0.40 13.41 8.56 -92.71 -0.79 12.62 16 39 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.07 3.76 6.06 -2.38 -0.01 3.74 16 42 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 43 H 0.12 4.73 6.21 -2.91 -0.02 4.71 16 44 H 0.15 3.59 6.29 -2.91 -0.02 3.57 16 45 H 0.12 1.46 8.14 -2.38 -0.02 1.44 16 46 H 0.06 0.96 7.66 -2.39 -0.02 0.94 16 47 H 0.06 0.96 7.66 -2.39 -0.02 0.95 16 Total: -1.00 -75.54 391.37 1.76 -73.77 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: -0.60 Total: 32.12 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 7.28 Total: 14.40 kcal Atomic # 7 Polarization: -101.33 SS G_CDS: -3.80 Total: -105.13 kcal Atomic # 8 Polarization: -55.52 SS G_CDS: -3.14 Total: -58.66 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.50 kcal Total: -75.54 1.76 -73.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359796673.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.566 kcal (2) G-P(sol) polarization free energy of solvation -75.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds