Wall clock time and date at job start Tue Mar 31 2020 21:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46901 * 109.47097 * 2 1 4 4 C 1.46978 * 111.00115 * 170.10075 * 3 2 1 5 5 C 1.53185 * 109.61006 * 52.26753 * 4 3 2 6 6 C 1.52211 * 108.14698 * 50.46956 * 5 4 3 7 7 N 1.32488 * 124.97771 * 163.46267 * 6 5 4 8 8 C 1.29364 * 117.59821 * 180.25675 * 7 6 5 9 9 N 1.38991 * 124.94575 * 179.82126 * 8 7 6 10 10 C 1.34779 * 119.99961 * 359.70248 * 9 8 7 11 11 O 1.21279 * 119.99890 * 359.97438 * 10 9 8 12 12 C 1.50697 * 119.99775 * 179.97438 * 10 9 8 13 13 H 1.08998 * 109.47793 * 40.00300 * 12 10 9 14 14 N 1.46901 * 109.46912 * 159.99971 * 12 10 9 15 15 C 1.53006 * 109.47301 * 279.99751 * 12 10 9 16 16 C 1.52999 * 109.46997 * 175.00426 * 15 12 10 17 17 C 1.50706 * 109.46573 * 180.02562 * 16 15 12 18 18 H 1.07995 * 120.00167 * 359.72054 * 17 16 15 19 19 C 1.37879 * 119.99394 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47474 * 90.00322 * 21 19 17 23 23 H 1.48507 * 109.46754 * 210.00056 * 21 19 17 24 24 H 1.48498 * 109.47278 * 329.99887 * 21 19 17 25 25 S 1.70951 * 110.10969 * 359.56088 * 8 7 6 26 26 C 1.34614 * 121.71344 * 343.22930 * 6 5 4 27 27 C 1.47196 * 111.00453 * 293.95652 * 3 2 1 28 28 H 1.09004 * 109.47268 * 59.99775 * 1 2 3 29 29 H 1.08998 * 109.47338 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47491 * 299.99830 * 1 2 3 31 31 H 1.08993 * 109.47138 * 240.00557 * 2 1 3 32 32 H 1.08996 * 109.47015 * 120.00021 * 2 1 3 33 33 H 1.08997 * 109.44505 * 172.30957 * 4 3 2 34 34 H 1.09001 * 109.44610 * 292.22753 * 4 3 2 35 35 H 1.09000 * 109.72506 * 170.13110 * 5 4 3 36 36 H 1.09004 * 109.73155 * 290.75928 * 5 4 3 37 37 H 0.97004 * 120.00101 * 179.69694 * 9 8 7 38 38 H 1.00900 * 111.00110 * 60.00140 * 14 12 10 39 39 H 1.00905 * 111.00268 * 183.95255 * 14 12 10 40 40 H 1.09000 * 109.46866 * 55.00213 * 15 12 10 41 41 H 1.09001 * 109.46611 * 295.00330 * 15 12 10 42 42 H 1.09000 * 109.47486 * 60.00167 * 16 15 12 43 43 H 1.09001 * 109.47362 * 299.99445 * 16 15 12 44 44 H 0.96996 * 119.99730 * 179.97438 * 20 19 17 45 45 H 1.08998 * 109.64863 * 167.05606 * 27 3 2 46 46 H 1.09008 * 109.64221 * 46.42377 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4696 1.4311 0.2359 5 6 4.1809 0.5006 -0.7514 6 6 3.6807 0.8240 -2.1522 7 7 4.2781 0.4556 -3.2759 8 6 3.7296 0.8136 -4.3914 9 7 4.2261 0.5146 -5.6547 10 6 5.3651 -0.1949 -5.7806 11 8 5.9570 -0.5719 -4.7915 12 6 5.9030 -0.5195 -7.1503 13 1 5.7765 0.3432 -7.8044 14 7 7.3303 -0.8523 -7.0496 15 6 5.1405 -1.7137 -7.7279 16 6 5.6000 -1.9652 -9.1654 17 6 4.8484 -3.1410 -9.7345 18 1 4.1196 -3.6600 -9.1296 19 6 5.0952 -3.5574 -11.0255 20 7 5.9867 -2.9288 -11.7602 21 14 4.1631 -5.0144 -11.7311 22 1 2.9198 -4.5360 -12.3874 23 1 5.0141 -5.7096 -12.7300 24 1 3.8144 -5.9559 -10.6369 25 16 2.3014 1.7020 -4.0857 26 6 2.5524 1.5294 -2.3553 27 6 1.6694 2.0684 -1.2558 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8932 -0.5138 0.8899 33 1 3.8278 2.4509 0.0959 34 1 3.6818 1.1090 1.2554 35 1 5.2576 0.6621 -0.6988 36 1 3.9524 -0.5373 -0.5089 37 1 3.7528 0.8165 -6.4458 38 1 7.4742 -1.6496 -6.4482 39 1 7.7299 -1.0112 -7.9624 40 1 4.0716 -1.5004 -7.7201 41 1 5.3389 -2.5984 -7.1229 42 1 6.6689 -2.1785 -9.1732 43 1 5.4016 -1.0805 -9.7704 44 1 6.1604 -3.2221 -12.6683 45 1 1.8327 3.1406 -1.1474 46 1 0.6241 1.8766 -1.4982 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424136069.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:13 Heat of formation + Delta-G solvation = 13.673747 kcal Electronic energy + Delta-G solvation = -26685.143313 eV Core-core repulsion = 22929.297998 eV Total energy + Delta-G solvation = -3755.845314 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.91942 -39.91953 -37.95965 -35.64778 -34.83535 -32.92406 -32.47951 -31.05278 -29.99083 -29.45389 -27.08117 -25.25761 -24.69884 -24.10712 -22.97074 -21.95487 -20.61723 -20.13855 -18.93229 -18.23441 -17.16341 -16.90696 -16.27094 -16.09843 -15.82528 -15.27359 -15.16996 -14.77288 -14.64201 -14.49196 -14.23605 -13.99141 -13.58006 -13.31815 -13.15418 -13.04987 -12.71652 -12.65513 -12.34093 -12.23246 -11.99743 -11.81620 -11.65186 -11.24418 -11.18084 -11.00381 -10.98438 -10.75364 -10.52447 -10.23307 -10.07833 -9.67983 -9.33062 -9.32246 -9.18221 -8.81345 -8.49608 -8.32439 -8.17814 -6.13875 -4.17315 0.57433 0.82665 1.48399 2.48087 2.77924 3.02091 3.23540 3.30677 3.33927 3.50493 4.04522 4.35013 4.56297 4.63478 4.65889 4.70150 4.83304 4.94610 5.02285 5.04204 5.15153 5.22199 5.22363 5.33291 5.41690 5.43575 5.50354 5.58808 5.60222 5.64647 5.69488 5.86695 5.88898 6.15011 6.20589 6.40224 6.56901 6.62968 6.76391 6.91798 7.38514 7.44629 7.53928 7.76773 7.79238 7.82902 8.19873 8.24986 8.88420 9.48005 10.96962 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018074 B = 0.002284 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.787900 B =12258.159768 C =12882.260715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.041 3.959 3 N -0.521 5.521 4 C 0.054 3.946 5 C -0.076 4.076 6 C 0.102 3.898 7 N -0.477 5.477 8 C 0.288 3.712 9 N -0.637 5.637 10 C 0.518 3.482 11 O -0.466 6.466 12 C 0.081 3.919 13 H 0.102 0.898 14 N -0.830 5.830 15 C -0.139 4.139 16 C 0.025 3.975 17 C -0.525 4.525 18 H 0.055 0.945 19 C 0.059 3.941 20 N -0.892 5.892 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.274 1.274 25 S 0.122 5.878 26 C -0.294 4.294 27 C 0.136 3.864 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.042 0.958 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.424 0.576 38 H 0.347 0.653 39 H 0.358 0.642 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.019 0.981 43 H 0.020 0.980 44 H 0.262 0.738 45 H 0.092 0.908 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.671 12.094 21.656 26.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.086 4.086 3 N -0.243 5.243 4 C -0.075 4.075 5 C -0.117 4.117 6 C -0.031 4.031 7 N -0.197 5.197 8 C -0.081 4.081 9 N -0.290 5.290 10 C 0.302 3.698 11 O -0.332 6.332 12 C -0.034 4.034 13 H 0.119 0.881 14 N -0.362 5.362 15 C -0.179 4.179 16 C -0.012 4.012 17 C -0.564 4.564 18 H 0.073 0.927 19 C -0.143 4.143 20 N -0.531 5.531 21 Si 0.721 3.279 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.199 1.199 25 S 0.374 5.626 26 C -0.418 4.418 27 C 0.006 3.994 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.261 0.739 38 H 0.161 0.839 39 H 0.174 0.826 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.037 0.963 43 H 0.038 0.962 44 H 0.072 0.928 45 H 0.110 0.890 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.478 12.905 22.153 27.333 hybrid contribution -0.220 -2.278 -1.545 2.761 sum -9.698 10.627 20.607 25.133 Atomic orbital electron populations 1.21813 0.94738 1.01787 1.02327 1.22169 0.96145 0.88879 1.01426 1.62688 1.13592 1.16556 1.31489 1.22284 0.86268 1.00180 0.98733 1.21064 1.01910 1.01147 0.87582 1.20564 0.91365 0.96916 0.94215 1.66024 1.32742 1.25002 0.95971 1.23476 0.95474 0.99189 0.89974 1.43418 1.26558 1.55024 1.03967 1.21396 0.78909 0.76676 0.92814 1.90756 1.55435 1.47552 1.39472 1.21468 0.90667 1.00675 0.90624 0.88057 1.58726 1.11507 1.47072 1.18944 1.22432 0.99329 0.95280 1.00833 1.19107 0.96759 0.97231 0.88132 1.21159 1.22670 1.14402 0.98131 0.92704 1.25010 0.95206 0.96943 0.97118 1.69942 1.33087 1.40717 1.09363 0.86576 0.79760 0.82647 0.78938 1.20570 1.21102 1.19882 1.83735 1.23753 1.53708 1.01430 1.26598 1.04835 1.13420 0.96969 1.20822 0.97109 0.98401 0.83107 0.92665 0.92174 0.91805 0.93921 0.90494 0.90045 0.89235 0.88994 0.89663 0.73861 0.83939 0.82590 0.92480 0.92429 0.96277 0.96192 0.92815 0.88993 0.89103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.87 37.15 0.37 -0.64 16 2 C 0.04 0.33 4.69 -3.83 -0.02 0.31 16 3 N -0.52 -4.17 4.98 -235.47 -1.17 -5.34 16 4 C 0.05 0.41 5.90 -3.69 -0.02 0.39 16 5 C -0.08 -0.77 5.73 -27.04 -0.15 -0.92 16 6 C 0.10 1.33 6.18 -82.84 -0.51 0.82 16 7 N -0.48 -7.76 8.61 -10.49 -0.09 -7.85 16 8 C 0.29 4.15 8.02 -87.57 -0.70 3.45 16 9 N -0.64 -8.82 5.40 -13.13 -0.07 -8.89 16 10 C 0.52 8.73 7.04 -10.99 -0.08 8.65 16 11 O -0.47 -9.45 14.89 5.56 0.08 -9.37 16 12 C 0.08 1.34 3.21 -68.86 -0.22 1.12 16 13 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 14 N -0.83 -13.92 8.94 -5.65 -0.05 -13.97 16 15 C -0.14 -2.64 4.78 -26.73 -0.13 -2.76 16 16 C 0.02 0.58 4.74 -27.88 -0.13 0.45 16 17 C -0.53 -14.16 9.11 -34.44 -0.31 -14.48 16 18 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 21 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 25 S 0.12 1.29 23.20 -107.50 -2.49 -1.21 16 26 C -0.29 -3.19 5.87 -35.46 -0.21 -3.40 16 27 C 0.14 1.11 6.02 -4.68 -0.03 1.09 16 28 H 0.05 0.38 6.32 -51.93 -0.33 0.05 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.04 0.43 6.02 -51.93 -0.31 0.11 16 32 H 0.08 0.54 8.08 -51.93 -0.42 0.12 16 33 H 0.08 0.60 8.06 -51.93 -0.42 0.18 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.09 0.85 7.15 -51.93 -0.37 0.48 16 37 H 0.42 4.43 8.82 -40.82 -0.36 4.07 16 38 H 0.35 5.94 8.58 -39.29 -0.34 5.61 16 39 H 0.36 5.95 7.55 -39.29 -0.30 5.66 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.02 0.47 6.87 -51.93 -0.36 0.11 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.09 0.67 6.01 -51.92 -0.31 0.36 16 LS Contribution 379.56 15.07 5.72 5.72 Total: -1.00 -33.13 379.56 -11.47 -44.60 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -6.86 Total: 9.56 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -2.25 Total: -4.40 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: -0.65 Total: -60.93 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.08 Total: -9.37 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.49 Total: -1.21 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.13 -11.47 -44.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424136069.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.272 kcal (2) G-P(sol) polarization free energy of solvation -33.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds