Wall clock time and date at job start Tue Mar 31 2020 21:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46901 * 109.47097 * 2 1 4 4 C 1.46978 * 111.00115 * 170.10075 * 3 2 1 5 5 C 1.53185 * 109.61006 * 52.26753 * 4 3 2 6 6 C 1.52211 * 108.14698 * 50.46956 * 5 4 3 7 7 N 1.32488 * 124.97771 * 163.46267 * 6 5 4 8 8 C 1.29364 * 117.59821 * 180.25675 * 7 6 5 9 9 N 1.38991 * 124.94575 * 179.82126 * 8 7 6 10 10 C 1.34779 * 119.99961 * 359.70248 * 9 8 7 11 11 O 1.21279 * 119.99890 * 359.97438 * 10 9 8 12 12 C 1.50697 * 119.99775 * 179.97438 * 10 9 8 13 13 H 1.08998 * 109.47793 * 40.00300 * 12 10 9 14 14 N 1.46901 * 109.46912 * 159.99971 * 12 10 9 15 15 C 1.53006 * 109.47301 * 279.99751 * 12 10 9 16 16 C 1.52999 * 109.46997 * 175.00426 * 15 12 10 17 17 C 1.50706 * 109.46573 * 180.02562 * 16 15 12 18 18 H 1.07995 * 120.00167 * 359.72054 * 17 16 15 19 19 C 1.37879 * 119.99394 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47474 * 90.00322 * 21 19 17 23 23 H 1.48507 * 109.46754 * 210.00056 * 21 19 17 24 24 H 1.48498 * 109.47278 * 329.99887 * 21 19 17 25 25 S 1.70951 * 110.10969 * 359.56088 * 8 7 6 26 26 C 1.34614 * 121.71344 * 343.22930 * 6 5 4 27 27 C 1.47196 * 111.00453 * 293.95652 * 3 2 1 28 28 H 1.09004 * 109.47268 * 59.99775 * 1 2 3 29 29 H 1.08998 * 109.47338 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47491 * 299.99830 * 1 2 3 31 31 H 1.08993 * 109.47138 * 240.00557 * 2 1 3 32 32 H 1.08996 * 109.47015 * 120.00021 * 2 1 3 33 33 H 1.08997 * 109.44505 * 172.30957 * 4 3 2 34 34 H 1.09001 * 109.44610 * 292.22753 * 4 3 2 35 35 H 1.09000 * 109.72506 * 170.13110 * 5 4 3 36 36 H 1.09004 * 109.73155 * 290.75928 * 5 4 3 37 37 H 0.97004 * 120.00101 * 179.69694 * 9 8 7 38 38 H 1.00900 * 111.00110 * 60.00140 * 14 12 10 39 39 H 1.00905 * 111.00268 * 183.95255 * 14 12 10 40 40 H 1.09000 * 109.46866 * 55.00213 * 15 12 10 41 41 H 1.09001 * 109.46611 * 295.00330 * 15 12 10 42 42 H 1.09000 * 109.47486 * 60.00167 * 16 15 12 43 43 H 1.09001 * 109.47362 * 299.99445 * 16 15 12 44 44 H 0.96996 * 119.99730 * 179.97438 * 20 19 17 45 45 H 1.08998 * 109.64863 * 167.05606 * 27 3 2 46 46 H 1.09008 * 109.64221 * 46.42377 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4696 1.4311 0.2359 5 6 4.1809 0.5006 -0.7514 6 6 3.6807 0.8240 -2.1522 7 7 4.2781 0.4556 -3.2759 8 6 3.7296 0.8136 -4.3914 9 7 4.2261 0.5146 -5.6547 10 6 5.3651 -0.1949 -5.7806 11 8 5.9570 -0.5719 -4.7915 12 6 5.9030 -0.5195 -7.1503 13 1 5.7765 0.3432 -7.8044 14 7 7.3303 -0.8523 -7.0496 15 6 5.1405 -1.7137 -7.7279 16 6 5.6000 -1.9652 -9.1654 17 6 4.8484 -3.1410 -9.7345 18 1 4.1196 -3.6600 -9.1296 19 6 5.0952 -3.5574 -11.0255 20 7 5.9867 -2.9288 -11.7602 21 14 4.1631 -5.0144 -11.7311 22 1 2.9198 -4.5360 -12.3874 23 1 5.0141 -5.7096 -12.7300 24 1 3.8144 -5.9559 -10.6369 25 16 2.3014 1.7020 -4.0857 26 6 2.5524 1.5294 -2.3553 27 6 1.6694 2.0684 -1.2558 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8932 -0.5138 0.8899 33 1 3.8278 2.4509 0.0959 34 1 3.6818 1.1090 1.2554 35 1 5.2576 0.6621 -0.6988 36 1 3.9524 -0.5373 -0.5089 37 1 3.7528 0.8165 -6.4458 38 1 7.4742 -1.6496 -6.4482 39 1 7.7299 -1.0112 -7.9624 40 1 4.0716 -1.5004 -7.7201 41 1 5.3389 -2.5984 -7.1229 42 1 6.6689 -2.1785 -9.1732 43 1 5.4016 -1.0805 -9.7704 44 1 6.1604 -3.2221 -12.6683 45 1 1.8327 3.1406 -1.1474 46 1 0.6241 1.8766 -1.4982 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424136069.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:12 Heat of formation + Delta-G solvation = -10.812117 kcal Electronic energy + Delta-G solvation = -26686.205099 eV Core-core repulsion = 22929.297998 eV Total energy + Delta-G solvation = -3756.907101 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.91515 -41.00652 -38.88255 -37.15696 -36.00624 -34.87514 -33.18310 -31.78958 -31.74163 -30.27409 -28.53049 -26.64117 -25.50038 -25.24178 -24.02076 -22.99188 -22.10561 -21.20533 -19.97165 -19.30225 -18.56549 -18.02407 -17.85860 -16.87321 -16.73337 -16.58371 -16.19646 -16.00071 -15.93370 -15.78720 -15.37579 -15.08120 -14.82268 -14.61583 -14.35149 -14.08439 -13.81205 -13.56674 -13.47336 -13.29216 -13.03670 -12.94685 -12.74959 -12.63686 -12.56364 -12.30629 -11.88805 -11.86094 -11.82768 -11.72650 -11.53094 -11.33798 -11.17428 -10.57740 -10.37003 -10.23162 -9.73484 -9.50003 -9.14737 -8.23469 -6.33555 -0.39756 -0.11821 0.56983 1.31656 1.38113 1.39349 1.49465 1.73994 1.89580 2.38178 2.81919 3.09528 3.10811 3.63654 3.67105 3.84548 3.93071 4.02429 4.02871 4.06849 4.13644 4.25457 4.39122 4.47418 4.54319 4.58630 4.65000 4.75430 4.76703 4.83300 4.91012 5.00196 5.03146 5.05126 5.10548 5.25360 5.35960 5.44154 5.62419 5.77959 5.82451 5.93736 5.99638 6.06327 6.18794 6.40532 6.71707 6.81569 7.04748 7.35594 8.87163 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018074 B = 0.002284 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.787900 B =12258.159768 C =12882.260715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.042 3.958 3 N -0.517 5.517 4 C 0.061 3.939 5 C -0.073 4.073 6 C 0.069 3.931 7 N -0.518 5.518 8 C 0.246 3.754 9 N -0.627 5.627 10 C 0.522 3.478 11 O -0.507 6.507 12 C 0.091 3.909 13 H 0.121 0.879 14 N -0.830 5.830 15 C -0.122 4.122 16 C 0.031 3.969 17 C -0.545 4.545 18 H 0.053 0.947 19 C 0.007 3.993 20 N -0.925 5.925 21 Si 0.957 3.043 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.270 1.270 25 S 0.193 5.807 26 C -0.282 4.282 27 C 0.134 3.866 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.019 0.981 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.438 0.562 38 H 0.344 0.656 39 H 0.358 0.642 40 H 0.068 0.932 41 H 0.043 0.957 42 H 0.004 0.996 43 H 0.007 0.993 44 H 0.264 0.736 45 H 0.110 0.890 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.998 13.074 22.685 28.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.085 4.085 3 N -0.238 5.238 4 C -0.068 4.068 5 C -0.114 4.114 6 C -0.063 4.063 7 N -0.240 5.240 8 C -0.122 4.122 9 N -0.281 5.281 10 C 0.307 3.693 11 O -0.377 6.377 12 C -0.025 4.025 13 H 0.139 0.861 14 N -0.362 5.362 15 C -0.162 4.162 16 C -0.007 4.007 17 C -0.583 4.583 18 H 0.071 0.929 19 C -0.192 4.192 20 N -0.565 5.565 21 Si 0.782 3.218 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.194 1.194 25 S 0.445 5.555 26 C -0.406 4.406 27 C 0.003 3.997 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.037 0.963 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.127 0.873 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.279 0.721 38 H 0.157 0.843 39 H 0.174 0.826 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.022 0.978 43 H 0.026 0.974 44 H 0.073 0.927 45 H 0.128 0.872 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.848 13.915 23.181 29.519 hybrid contribution 0.427 -2.518 -1.793 3.121 sum -11.422 11.397 21.388 26.792 Atomic orbital electron populations 1.21790 0.93722 1.02164 1.02632 1.22181 0.96952 0.88677 1.00734 1.62752 1.13614 1.16467 1.30987 1.22320 0.85769 0.99832 0.98876 1.21121 1.01602 1.01560 0.87146 1.20919 0.92561 0.98429 0.94389 1.65988 1.34706 1.25975 0.97335 1.23694 0.97647 1.01304 0.89577 1.43130 1.25774 1.54344 1.04849 1.21282 0.79407 0.76549 0.92106 1.90739 1.56933 1.49487 1.40507 1.21386 0.89963 1.00192 0.90989 0.86083 1.58739 1.11788 1.46894 1.18769 1.22169 1.00240 0.95956 0.97821 1.18969 0.95581 0.95633 0.90471 1.21599 1.22845 1.15386 0.98517 0.92853 1.25837 0.96095 0.99642 0.97632 1.70049 1.34448 1.42256 1.09723 0.85563 0.78655 0.79356 0.78177 1.19603 1.20815 1.19432 1.83415 1.20337 1.51241 1.00470 1.27158 1.03989 1.11210 0.98227 1.21084 0.97191 0.99222 0.82200 0.92681 0.91857 0.91074 0.96276 0.89654 0.89521 0.87301 0.90013 0.90217 0.72133 0.84268 0.82649 0.91299 0.93834 0.97761 0.97424 0.92691 0.87233 0.87718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.87 71.98 0.71 -0.95 16 2 C 0.04 0.60 4.69 86.30 0.41 1.00 16 3 N -0.52 -7.06 4.98 -898.90 -4.48 -11.53 16 4 C 0.06 0.82 5.90 86.35 0.51 1.33 16 5 C -0.07 -1.48 5.73 30.40 0.17 -1.30 16 6 C 0.07 1.78 6.18 42.11 0.26 2.04 16 7 N -0.52 -17.11 8.61 -187.11 -1.61 -18.72 16 8 C 0.25 6.97 8.02 179.28 1.44 8.41 16 9 N -0.63 -17.13 5.40 -313.84 -1.70 -18.82 16 10 C 0.52 17.75 7.04 87.66 0.62 18.36 16 11 O -0.51 -21.17 14.89 -3.03 -0.05 -21.22 16 12 C 0.09 2.97 3.21 44.17 0.14 3.11 16 13 H 0.12 3.49 8.14 -2.39 -0.02 3.47 16 14 N -0.83 -28.31 8.94 -171.80 -1.54 -29.85 16 15 C -0.12 -4.64 4.78 30.60 0.15 -4.50 16 16 C 0.03 1.46 4.74 29.85 0.14 1.60 16 17 C -0.55 -29.53 9.11 25.60 0.23 -29.30 16 18 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 19 C 0.01 0.37 5.46 84.66 0.46 0.83 16 20 N -0.92 -53.51 13.29 21.45 0.28 -53.23 16 21 Si 0.96 43.02 29.54 68.60 2.03 45.04 16 22 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 25 S 0.19 3.71 23.20 -56.49 -1.31 2.40 16 26 C -0.28 -5.64 5.87 24.94 0.15 -5.49 16 27 C 0.13 1.82 6.02 85.58 0.52 2.34 16 28 H 0.05 0.62 6.32 -2.39 -0.02 0.61 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.02 0.37 6.02 -2.39 -0.01 0.35 16 32 H 0.09 1.05 8.08 -2.39 -0.02 1.04 16 33 H 0.09 1.10 8.06 -2.39 -0.02 1.08 16 34 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.08 1.64 7.15 -2.39 -0.02 1.62 16 37 H 0.44 8.66 8.82 -92.71 -0.82 7.85 16 38 H 0.34 12.16 8.58 -89.69 -0.77 11.39 16 39 H 0.36 12.15 7.55 -89.69 -0.68 11.47 16 40 H 0.07 2.43 8.14 -2.39 -0.02 2.42 16 41 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.00 0.21 6.87 -2.39 -0.02 0.19 16 43 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 44 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 45 H 0.11 1.19 8.14 -2.39 -0.02 1.18 16 46 H 0.10 1.19 6.01 -2.38 -0.01 1.17 16 Total: -1.00 -72.07 379.56 -3.69 -75.76 By element: Atomic # 1 Polarization: 33.92 SS G_CDS: -1.23 Total: 32.69 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 5.90 Total: -2.52 kcal Atomic # 7 Polarization: -123.12 SS G_CDS: -9.03 Total: -132.16 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.05 Total: -21.22 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 3.71 SS G_CDS: -1.31 Total: 2.40 kcal Total: -72.07 -3.69 -75.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424136069.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.948 kcal (2) G-P(sol) polarization free energy of solvation -72.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds