Wall clock time and date at job start Tue Mar 31 2020 21:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47184 * 2 1 4 4 C 1.53006 * 109.46552 * 240.00125 * 2 1 3 5 5 O 1.42900 * 109.47176 * 305.00228 * 4 2 1 6 6 C 1.42900 * 113.99841 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.47102 * 179.97438 * 6 5 4 8 8 F 1.39901 * 109.46804 * 59.99691 * 7 6 5 9 9 F 1.39897 * 109.47148 * 179.97438 * 7 6 5 10 10 F 1.39894 * 109.46954 * 300.00049 * 7 6 5 11 11 N 1.46495 * 109.47091 * 120.00328 * 2 1 3 12 12 C 1.34770 * 120.00074 * 274.99548 * 11 2 1 13 13 O 1.21584 * 120.00110 * 355.01205 * 12 11 2 14 14 N 1.34781 * 120.00170 * 175.01451 * 12 11 2 15 15 C 1.46924 * 120.63025 * 184.94480 * 14 12 11 16 16 C 1.52758 * 109.00886 * 233.57900 * 15 14 12 17 17 C 1.53037 * 109.38663 * 305.59100 * 16 15 14 18 18 C 1.50701 * 109.44900 * 181.25016 * 17 16 15 19 19 H 1.07998 * 119.99880 * 239.93857 * 18 17 16 20 20 C 1.37878 * 119.99491 * 59.94030 * 18 17 16 21 21 N 1.31512 * 120.00492 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99319 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47510 * 59.99861 * 22 20 18 24 24 H 1.48506 * 109.46791 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47037 * 299.99544 * 22 20 18 26 26 C 1.53041 * 109.53742 * 61.24018 * 17 16 15 27 27 C 1.46921 * 120.62907 * 5.22329 * 14 12 11 28 28 H 1.09001 * 109.47068 * 59.99115 * 1 2 3 29 29 H 1.08993 * 109.47535 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46685 * 299.99940 * 1 2 3 31 31 H 1.08997 * 109.46956 * 65.00288 * 4 2 1 32 32 H 1.08997 * 109.46638 * 185.00072 * 4 2 1 33 33 H 1.09008 * 109.46732 * 299.99187 * 6 5 4 34 34 H 1.08998 * 109.47268 * 59.99503 * 6 5 4 35 35 H 0.97004 * 120.00083 * 94.99347 * 11 2 1 36 36 H 1.08997 * 109.58983 * 353.41963 * 15 14 12 37 37 H 1.09003 * 109.58645 * 113.84321 * 15 14 12 38 38 H 1.09005 * 109.56540 * 185.55045 * 16 15 14 39 39 H 1.09008 * 109.38084 * 65.52224 * 16 15 14 40 40 H 1.09004 * 109.45846 * 301.21694 * 17 16 15 41 41 H 0.96999 * 120.00099 * 179.97438 * 21 20 18 42 42 H 1.08997 * 109.49695 * 178.68421 * 26 17 16 43 43 H 1.09003 * 109.52762 * 58.59756 * 26 17 16 44 44 H 1.09006 * 109.58887 * 246.15741 * 27 14 12 45 45 H 1.09001 * 109.59149 * 6.43991 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 1.4700 -2.0303 -1.3096 6 6 1.8842 -2.7929 -2.4449 7 6 1.2167 -4.1690 -2.4061 8 9 -0.1735 -4.0138 -2.4304 9 9 1.6217 -4.9153 -3.5179 10 9 1.5910 -4.8359 -1.2347 11 7 2.0184 -0.6907 1.1961 12 6 2.1472 -0.0184 2.3570 13 8 1.9454 1.1801 2.3911 14 7 2.4997 -0.6746 3.4803 15 6 2.5392 0.0222 4.7732 16 6 3.9120 -0.1872 5.4095 17 6 4.2098 -1.6860 5.4935 18 6 5.5505 -1.8953 6.1490 19 1 6.3395 -2.4032 5.6144 20 6 5.7696 -1.4384 7.4313 21 7 4.8089 -0.8195 8.0821 22 14 7.4318 -1.6973 8.2435 23 1 8.4855 -1.0281 7.4392 24 1 7.4099 -1.1187 9.6111 25 1 7.7211 -3.1515 8.3265 26 6 4.2324 -2.2831 4.0845 27 6 2.8577 -2.0988 3.4341 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.7516 -0.1583 -2.1370 32 1 3.1262 -0.7995 -1.2057 33 1 1.5928 -2.2730 -3.3576 34 1 2.9673 -2.9141 -2.4257 35 1 2.2490 -1.6319 1.1525 36 1 2.3678 1.0875 4.6195 37 1 1.7694 -0.3828 5.4302 38 1 3.9192 0.2418 6.4115 39 1 4.6719 0.3011 4.7992 40 1 3.4362 -2.1774 6.0837 41 1 4.9631 -0.4984 8.9843 42 1 4.4676 -3.3457 4.1434 43 1 4.9890 -1.7756 3.4859 44 1 2.1144 -2.6803 3.9796 45 1 2.8939 -2.4331 2.3972 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543772696.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:29 Heat of formation + Delta-G solvation = -232.606552 kcal Electronic energy + Delta-G solvation = -30449.792077 eV Core-core repulsion = 25666.364885 eV Total energy + Delta-G solvation = -4783.427192 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.44983 -48.01847 -47.89296 -40.12468 -38.81644 -37.01737 -35.24027 -33.55572 -31.64847 -30.83147 -30.11236 -29.40942 -26.71414 -26.06380 -23.71095 -23.16118 -22.43423 -21.33135 -20.13297 -19.02343 -18.98067 -18.96070 -18.19270 -17.56518 -17.02184 -16.50342 -16.28978 -15.68357 -15.13360 -14.83100 -14.79536 -14.64426 -14.45486 -14.36653 -14.13234 -14.07494 -14.06365 -13.76932 -13.48892 -13.15653 -12.91980 -12.80221 -12.58280 -12.39792 -12.19877 -12.11190 -11.80629 -11.57123 -11.18456 -11.08633 -10.90900 -10.66870 -10.42846 -10.40365 -10.03823 -9.74834 -9.53660 -9.16315 -8.99068 -8.87897 -8.34767 -7.86914 -6.00061 -4.06883 2.02625 2.85274 3.01143 3.30928 3.36127 3.38269 3.39214 3.57039 3.57695 4.01362 4.20685 4.42362 4.43719 4.53028 4.54049 4.73364 4.87934 5.24563 5.29474 5.32811 5.41234 5.62113 5.80100 5.81719 5.92381 6.09121 6.21543 6.24994 6.30959 6.45871 6.52403 6.64307 6.69755 6.84409 7.00625 7.17712 7.27090 7.52373 7.72852 7.95694 8.08403 8.34058 8.42331 8.96053 8.97040 9.57999 11.05268 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.015457 B = 0.002563 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.085673 B =10923.130652 C =12177.685154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.166 3.834 3 H 0.105 0.895 4 C 0.055 3.945 5 O -0.368 6.368 6 C 0.018 3.982 7 C 0.461 3.539 8 F -0.176 7.176 9 F -0.179 7.179 10 F -0.173 7.173 11 N -0.747 5.747 12 C 0.706 3.294 13 O -0.602 6.602 14 N -0.617 5.617 15 C 0.127 3.873 16 C -0.124 4.124 17 C 0.050 3.950 18 C -0.514 4.514 19 H 0.053 0.947 20 C 0.062 3.938 21 N -0.890 5.890 22 Si 0.891 3.109 23 H -0.278 1.278 24 H -0.287 1.287 25 H -0.278 1.278 26 C -0.123 4.123 27 C 0.113 3.887 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.399 0.601 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.103 0.897 39 H 0.037 0.963 40 H 0.027 0.973 41 H 0.261 0.739 42 H 0.060 0.940 43 H 0.051 0.949 44 H 0.062 0.938 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.870 -3.526 -23.304 24.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.060 3.940 3 H 0.122 0.878 4 C -0.021 4.021 5 O -0.287 6.287 6 C -0.061 4.061 7 C 0.406 3.594 8 F -0.157 7.157 9 F -0.160 7.160 10 F -0.155 7.155 11 N -0.406 5.406 12 C 0.408 3.592 13 O -0.482 6.482 14 N -0.353 5.353 15 C 0.005 3.995 16 C -0.162 4.162 17 C 0.032 3.968 18 C -0.552 4.552 19 H 0.072 0.928 20 C -0.139 4.139 21 N -0.529 5.529 22 Si 0.719 3.281 23 H -0.204 1.204 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.162 4.162 27 C -0.010 4.010 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.236 0.764 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.121 0.879 39 H 0.056 0.944 40 H 0.045 0.955 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.213 -2.662 -22.927 24.499 hybrid contribution 1.158 -0.835 0.237 1.447 sum -7.055 -3.497 -22.690 24.017 Atomic orbital electron populations 1.22125 0.94811 1.02785 1.02232 1.20796 0.94880 0.96530 0.81783 0.87765 1.23060 0.98035 0.82189 0.98865 1.87936 1.70278 1.27624 1.42895 1.23511 1.00659 0.88877 0.93032 1.20183 0.77412 0.87931 0.73826 1.93224 1.30710 1.95740 1.96067 1.93211 1.90468 1.78771 1.53551 1.93243 1.91009 1.82737 1.48467 1.45316 1.72449 1.14030 1.08799 1.15858 0.78046 0.84958 0.80369 1.90852 1.59541 1.12783 1.85036 1.47447 1.69908 1.10813 1.07149 1.21673 1.00012 0.96681 0.81153 1.21946 0.92033 1.00528 1.01728 1.18613 0.97089 0.91622 0.89509 1.21150 0.98076 1.37004 0.99009 0.92835 1.24961 0.96631 0.95103 0.97244 1.69831 1.32082 1.38760 1.12209 0.86684 0.84558 0.78397 0.78492 1.20370 1.21311 1.20344 1.22010 0.93689 1.00651 0.99806 1.21710 0.98618 0.81177 0.99493 0.92061 0.91649 0.91869 0.90921 0.91576 0.88559 0.88449 0.76412 0.90563 0.92610 0.87853 0.94421 0.95481 0.92891 0.92176 0.92983 0.91928 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.29 37.16 0.35 -1.34 16 2 C 0.17 1.76 3.02 -67.93 -0.21 1.55 16 3 H 0.10 1.21 7.51 -51.93 -0.39 0.82 16 4 C 0.05 0.39 5.68 37.16 0.21 0.60 16 5 O -0.37 -2.94 9.08 -35.23 -0.32 -3.26 16 6 C 0.02 0.10 5.90 37.16 0.22 0.32 16 7 C 0.46 3.59 3.32 37.16 0.12 3.71 16 8 F -0.18 -1.64 17.26 2.25 0.04 -1.60 16 9 F -0.18 -1.36 17.32 2.25 0.04 -1.32 16 10 F -0.17 -1.70 17.26 2.25 0.04 -1.67 16 11 N -0.75 -9.98 4.97 -58.68 -0.29 -10.27 16 12 C 0.71 12.55 8.26 -86.92 -0.72 11.83 16 13 O -0.60 -12.56 15.39 5.29 0.08 -12.48 16 14 N -0.62 -11.30 2.98 -178.76 -0.53 -11.83 16 15 C 0.13 2.58 6.41 -3.94 -0.03 2.56 16 16 C -0.12 -2.88 5.14 -26.84 -0.14 -3.02 16 17 C 0.05 1.19 2.07 -91.73 -0.19 1.00 16 18 C -0.51 -13.72 8.56 -34.44 -0.29 -14.01 16 19 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 20 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 21 N -0.89 -24.85 11.30 55.43 0.63 -24.22 16 22 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 C -0.12 -2.39 5.30 -26.61 -0.14 -2.53 16 27 C 0.11 1.85 6.39 -3.71 -0.02 1.83 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.71 7.56 -51.93 -0.39 0.32 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.10 0.30 8.14 -51.92 -0.42 -0.12 16 34 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.40 4.84 5.87 -40.82 -0.24 4.60 16 36 H 0.08 1.59 6.99 -51.93 -0.36 1.23 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.10 2.68 6.03 -51.93 -0.31 2.37 16 39 H 0.04 0.91 8.14 -51.92 -0.42 0.48 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.06 0.80 5.64 -51.93 -0.29 0.50 16 LS Contribution 374.41 15.07 5.64 5.64 Total: -1.00 -31.23 374.41 -7.24 -38.47 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -6.61 Total: 2.50 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -0.93 Total: 4.08 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: -0.20 Total: -46.33 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.24 Total: -15.74 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.12 Total: -4.59 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.23 -7.24 -38.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543772696.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.140 kcal (2) G-P(sol) polarization free energy of solvation -31.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds